LOCUS       CP067663                3357 bp    DNA     circular BCT 01-MAR-2022
DEFINITION  Klebsiella pneumoniae strain ARLG-4408 plasmid pC4698_3, complete
            sequence.
ACCESSION   CP067663
VERSION     CP067663.1
DBLINK      BioProject: PRJNA658369
            BioSample: SAMN15868505
KEYWORDS    .
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 3357)
  AUTHORS   Shropshire,W.C.
  TITLE     Highly Conserved and Distinct Accessory Genomes Drive Independent
            and Parallel Endemic Spread of Carbapenem-Resistant Klebsiella
            pneumoniae Clonal Groups 258 and 307
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3357)
  AUTHORS   Shropshire,W.C.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JAN-2021) HMH-CDI, Hackensack-Meridian Health Center
            for Discovery and Innovation, 340 Kingsland Street, Building 102,
            Nutley, NJ 07110, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 2020
            Assembly Method                   :: Flye v. 2.7
            Assembly Name                     :: C4698
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 255x
            Sequencing Technology             :: Oxford Nanopore GridION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2021 15:16:32
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 5.0
            Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
            Genes (total)                     :: 5,541
            CDSs (total)                      :: 5,417
            Genes (coding)                    :: 5,319
            CDSs (with protein)               :: 5,319
            Genes (RNA)                       :: 124
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 13
            Pseudo Genes (total)              :: 98
            CDSs (without protein)            :: 98
            Pseudo Genes (ambiguous residues) :: 0 of 98
            Pseudo Genes (frameshifted)       :: 43 of 98
            Pseudo Genes (incomplete)         :: 45 of 98
            Pseudo Genes (internal stop)      :: 21 of 98
            Pseudo Genes (multiple problems)  :: 10 of 98
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..3357
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="ARLG-4408"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="pC4698_3"
                     /geo_loc_name="USA: South"
                     /collection_date="2017"
                     /collected_by="MDRO network"
     gene            1..435
                     /locus_tag="JJZ87_27680"
     CDS             1..435
                     /locus_tag="JJZ87_27680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004193480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="UMF15756.1"
                     /translation="MSKRITQIDTATGEEVGSFVAVIRPKQKSAFERHFTMNQDALKIL
                     AKTLTGEQFKVLMMLLADLDYENYIQIAQADIADALGMQKTNVSRSVKALIDLSVILQG
                     PKVGRSYSYRLNPQFGWKGTVGNHKKALTNGLSVIQGGRS"
                     /name="MarR family transcriptional regulator"
     gene            complement(664..897)
                     /locus_tag="JJZ87_27685"
     CDS             complement(664..897)
                     /locus_tag="JJZ87_27685"
                     /inference="COORDINATES: protein motif:HMM:NF016769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mobilization protein"
                     /protein_id="UMF15757.1"
                     /translation="MTELETHLLNALKRMEQQFSEQLKASEKAQAALQSMFERTAEDNA
                     TLLKQVSFLDNRVTVLSEQLKQFGNLYRQNRR"
                     /name="mobilization protein"
     gene            complement(901..1407)
                     /locus_tag="JJZ87_27690"
     CDS             complement(901..1407)
                     /locus_tag="JJZ87_27690"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="mobilization protein"
                     /protein_id="UMF15758.1"
                     /translation="MSVSLTLQERLKQQHLAESETIQSLTKQQLSSLRSELNGIFQQEL
                     NTMLEDMRRQLHDTTEDMRQSRQSMLLTVVKNRVIFPALSAVTILAVIFLSGWGLSTFQ
                     ESQIMANWQQINSQKATLATLESKTAGLNIVQDKNGTFVVLPKGAKVDDSGWTVGKQQA
                     LRIVR"
                     /name="mobilization protein"
     gene            complement(1391..2143)
                     /locus_tag="JJZ87_27695"
                     /pseudo=""
     CDS             complement(1391..2143)
                     /locus_tag="JJZ87_27695"
                     /inference="COORDINATES: protein motif:HMM:NF015397.1"
                     /note="incomplete; partial on complete genome; missing
                     C-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            complement(2140..2430)
                     /gene="mobC"
                     /locus_tag="JJZ87_27700"
                     /pseudo=""
     CDS             complement(2140..2430)
                     /gene="mobC"
                     /locus_tag="JJZ87_27700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016239790.1"
                     /note="incomplete; partial on complete genome; missing
                     N-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="plasmid mobilization relaxosome protein MobC"
                     /name="mobC"
     gene            2621..2926
                     /locus_tag="JJZ87_27705"
     CDS             2621..2926
                     /locus_tag="JJZ87_27705"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="UMF15755.1"
                     /translation="MDIRQNSQIEANKSKILEAAYAGKGEIVTLDYEDDFGISRKEPVG
                     QVRIALAELVKNGLVIEKGCPDDGINVLITALGISTYEMKLFDNLPPDHPSRGKFF"
                     /name="hypothetical protein"
     Typing          complement(570..2143)
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="95.238"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 atgagtaaac gaattactca gatagacact gctacagggg aagaggtagg tagttttgtc
       61 gcagttatcc gacccaaaca gaagtcagct tttgagaggc atttcactat gaaccaagac
      121 gctttaaaga tccttgctaa aaccctcaca ggggagcaat tcaaagtctt gatgatgctg
      181 ttagctgatc tcgattatga aaattacatc caaattgccc aagctgatat tgccgacgct
      241 ttaggtatgc agaaaaccaa tgtaagccgt tcggttaagg cgcttattga cctatccgtg
      301 attcttcaag gcccaaaagt aggacgcagt tacagttacc gtctgaaccc tcagtttggc
      361 tggaaaggta ctgtggggaa ccacaaaaaa gcccttacta acgggttgag cgttattcag
      421 ggcgggcgta gctgaatagt taccatgaaa cgtaactatc gatgcggtga accaaaatat
      481 atttatattg tccaataggt tacagggata ttcctctgta acgaattttc cccgcctagt
      541 gcggggtttt ttttgcccgc taactctaca tgctcggtcc gtaatacctg ttcggcttcg
      601 gcgccggagg ctcaggttca cgctgtttct gctgcaacgc ttcctgaaat tcctgctgcc
      661 ttctcagcgc ctgttctgcc tgtagaggtt cccgaactgc ttcagctgct ccgacaatac
      721 tgtcacccga ttgtctaaga agctgacttg cttcaacagc gtggcgttgt cttccgcagt
      781 acgctcgaac atgctctgca aggcggcctg cgccttctcg gaagctttca gctgctcgct
      841 gaattgctgc tccatacgct tcaaggcgtt caataagtgc gtttccagtt ccgtcatggt
      901 ttacctcact atccgcaggg cttgctgctt cccgactgtc cagccgctgt cgtccacttt
      961 cgcccctttg ggcagcacga cgaatgtccc gttcttgtcc tgaacgatgt tcagacccgc
     1021 tgttttgctc tccagcgtcg ccagcgtggc tttctggctg ttgatctgct gccagttggc
     1081 catgatctgg ctttcctgaa acgtactcag gccccaaccg ctcagaaaga taactgccaa
     1141 gatcgtaacc gcgctcaggg ccgggaatat cacccggttt ttcacgacgg tcagcaacat
     1201 gctctgccgg ctctggcgca tatcctctgt cgtgtcgtgc agctgcctgc gcatatcttc
     1261 cagcatggta ttcagctctt gctgaaatat gccgttcaac tcgcttcgca aactgctcag
     1321 ctgctgcttc gtcaggcttt gaatagtctc gctctctgcg agatgttgct gtttcaatcg
     1381 ctcctgcagc gtcaaactca cgctcataaa gtcccccttt catgcgccac cgctggccgc
     1441 tctgcggatc tgacacggtg atgtaatttt taccttcgcg tgttacctgc attccaaggt
     1501 ctgaaacctg ctcgataaca tcgctacgac tgcgtataag cccctgtgcg gccctctgag
     1561 ataaaaccgc gtctatgagt agcctgacgt cttcctgcgg cttctcaccc cttctgaggg
     1621 cttctgcggc gattttcagc tcatgatcag gctgagcgat ctcacgtgcg cgccgtgggt
     1681 catccggatc agccaggcca tacctggcgt tgatttcact gcgcaggtca tcgaaagcct
     1741 gttttgcggc atctccgggc gggcggatgt taaggctttt cccggtgcca agctcaacgc
     1801 ggggcgtcac aaaatgcagc tcgtgatgcc cggcatgggt atgcctgacc cagaggatgt
     1861 tgtactgatc ggcttcaagc ccggcgaacg cgacctgttc aaagcgatcc atgaacgcct
     1921 gctccatttc tggcgtgacc ttctcctccg gagcgaaaga cagcacgcca gaagtgtatt
     1981 tgtgccggaa atcgagcgag tcgataaggt tgcgggtagc ctccggggat cccctcagca
     2041 cttccggcgg tgaattttcc cgaccgggac gcgttttatc ggtgacatag ccgaccgggc
     2101 caccgccgcc gccagtgccg tgcttgctga aacccacaat cattgcgaca gctcccgaat
     2161 atggcgctct atatccatca ggtgagcaac gacctcaacc gaggaagccg ccgatttatg
     2221 cgtattaacc cagcgggcaa tcatgttcag gttggcattg atgcggttaa gcatggcaat
     2281 ccgctcccga tcgacgtctt tgttgcgcac gctgaccctg ccgaggtgat cgcgaaccag
     2341 ctcggacatg gtacagcctg catcttcggc cagctgcttc agcgcctcaa attccgcgtc
     2401 agaaaacctg acccgcagca tgttatcgcg cttttccatt ccacctccgt cgtcgcatat
     2461 tgcgctttaa acaaggctac ccgatgttgc tacatttcgc tatgctcaat gtcgcacatc
     2521 gggccttgca atgggcggct tcgcctcccc ttgacccctc caaaacctaa ggcaaaaaag
     2581 tggtaatata ggtgcttaat taaccaggta ggagggttcg atggatattc ggcagaacag
     2641 tcagattgaa gcaaataagt ccaaaattct ggaggcagct tacgcaggca aaggtgagat
     2701 agttactctg gattacgaag atgacttcgg tatcagccgc aaagaacctg tagggcaagt
     2761 acgcattgct ttggctgaat tagtaaaaaa cgggttagtt attgaaaaag gctgcccgga
     2821 cgatgggatc aacgttttaa ttacagcact cggtatcagt acatatgaga tgaaactctt
     2881 cgacaatctt cctcctgacc atccatctcg gggtaaattc ttttaacaac ccgtcttaca
     2941 ggtggatggc ctcactgcgt gaaccatcca cctctactca gcttgtttta tcccgtgagt
     3001 cgtcaagggt gaaatgcact cgctccgctc gcccttgacg aatttcagct aacaaagccg
     3061 cttttgaaag aacatgtgcc gctcgccgca ggtcaggctg aggcgtaccg cagcatagcg
     3121 aggaacgaac agcctgaacg aggaagcgga atatcacctg aacgggcata gaaatgctta
     3181 cgcacgagtc gatgaaaata gggttcgcta cccggccata tgggcttctc gctataagat
     3241 acagaagagg gccttctctc agcccttgcg gggcgcggct ctcgcttgac gatagttatc
     3301 attattgata acgttgttat cattattgat aactattttt ttgggagagc ctcttaa
//
