LOCUS       CP067591                2058 bp    DNA     circular BCT 01-MAR-2022
DEFINITION  Klebsiella pneumoniae strain ARLG-4871 plasmid pC603_3, complete
            sequence.
ACCESSION   CP067591
VERSION     CP067591.1
DBLINK      BioProject: PRJNA658369
            BioSample: SAMN15869043
KEYWORDS    .
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 2058)
  AUTHORS   Shropshire,W.C.
  TITLE     Highly Conserved and Distinct Accessory Genomes Drive Independent
            and Parallel Endemic Spread of Carbapenem-Resistant Klebsiella
            pneumoniae Clonal Groups 258 and 307
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2058)
  AUTHORS   Shropshire,W.C.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JAN-2021) HMH-CDI, Hackensack-Meridian Health Center
            for Discovery and Innovation, 340 Kingsland Street, Building 102,
            Nutley, NJ 07110, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 2020
            Assembly Method                   :: Flye v. 2.7
            Assembly Name                     :: C603
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 323x
            Sequencing Technology             :: Oxford Nanopore GridION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2021 15:40:47
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 5.0
            Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
            Genes (total)                     :: 5,434
            CDSs (total)                      :: 5,310
            Genes (coding)                    :: 5,195
            CDSs (with protein)               :: 5,195
            Genes (RNA)                       :: 124
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 115
            CDSs (without protein)            :: 115
            Pseudo Genes (ambiguous residues) :: 0 of 115
            Pseudo Genes (frameshifted)       :: 57 of 115
            Pseudo Genes (incomplete)         :: 56 of 115
            Pseudo Genes (internal stop)      :: 23 of 115
            Pseudo Genes (multiple problems)  :: 21 of 115
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..2058
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="ARLG-4871"
                     /isolation_source="urine"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="pC603_3"
                     /geo_loc_name="USA: South"
                     /collection_date="2017"
                     /collected_by="MDRO network"
     gene            1..990
                     /locus_tag="JJ520_27165"
     CDS             1..990
                     /locus_tag="JJ520_27165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020240588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="UME28564.1"
                     /translation="MQNPELQNLTDYSPSDAPWDAHRSVSDDVGGIYLLAAEYERYGAR
                     MASCGGLLRFGWSTLKETGETRLRLREAHFCRVRHCPVCQWRRSLMWQARFYQSLPRIV
                     ADYPDSRWMFLTLTVRNCAIEELGETLSRMNTAFQRLKDRKEFRPVQGWIRTTEVTRGS
                     DGSAHPHFHTLMMVPPGMLNGKSYVRHERWVELWRECLRVSYDPNVDVRAVKPRKPKDG
                     ESLACATAELVRGAVAETLKYSTKPADMVADPKWFLELTRQTHKRRFVATGGALKDVLK
                     LDQETDADMVIGDDISEGDDDGSRIAFEWKTEVKKYRRSPTKDKTESD"
                     /name="protein rep"
     gene            1544..1735
                     /locus_tag="JJ520_27170"
     CDS             1544..1735
                     /locus_tag="JJ520_27170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020324555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="UME28563.1"
                     /translation="MIVRLDNRLFEILDEMGAHVDREMFMAAYAQRKAEKENDPRHIRQ
                     RKLTRLAHDLMSESDPEL"
                     /name="hypothetical protein"
     Typing          complement(717..908)
                     /name="ColpVC"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="98.446"
                     /coverage="100.0"
                     /evalue="2.86e-91"
ORIGIN
        1 atgcaaaatc ctgaactcca gaacctaact gactactccc cctcagatgc gccgtgggac
       61 gctcacagaa gcgtttctga cgacgtggga gggatttacc tgcttgcggc tgaatatgag
      121 cgctacgggg cgcgtatggc ctcctgtggc ggtttactga ggtttgggtg gtctaccctc
      181 aaagaaaccg gagaaacgcg cctgaggctg cgtgaggcgc atttctgccg tgtccggcac
      241 tgtcctgtct gccagtggag gcgctccctg atgtggcaag cccgtttcta ccagtccctg
      301 ccgcgtatcg tggcggatta ccccgattcc cgctggatgt ttctgaccct gaccgtgcgc
      361 aactgcgcga tcgaggagct gggcgagacg ctgagccgga tgaacacggc tttccagcga
      421 ctgaaggacc gtaaagagtt ccgaccagtt cagggctgga tacgcaccac ggaagtcacc
      481 cgcggcagtg acggcagcgc acacccgcac ttccacaccc tgatgatggt tccgccgggc
      541 atgcttaacg ggaagagtta cgtcaggcat gaacgctggg ttgagctgtg gcgtgagtgc
      601 ctgcgggtca gttacgatcc gaatgtcgat gtccgggcag tgaaaccccg caagccgaag
      661 gacggcgaat cgctggcctg cgcgaccgcc gaactggtgc gcggcgcagt ggccgaaacc
      721 ctgaaatatt ccacgaagcc ggccgacatg gtggccgatc ctaaatggtt cctcgaactg
      781 acccgccaga cgcacaagcg ccgctttgtg gcgaccggcg gcgcactcaa agacgtgctg
      841 aaactcgatc aggaaaccga cgccgacatg gtgatcgggg atgatatttc cgagggcgat
      901 gatgacggtt cccgcatcgc gttcgagtgg aagaccgagg tcaaaaagta ccggcgttcg
      961 ccgacgaaag ataaaaccga atcagactaa cagggtgtcg gggctgcgcc ctgaccatga
     1021 gggctttggg catccgtcac cttggtggcg gtgtaccaaa gtcacatctt gtccgattga
     1081 ttttactccg atgcaggata gggctaacgc cgcaaagtga cgtcactcga ttactgagtt
     1141 cggattccga acctgggttt ttcttccggt aattttccgg aaggcgcgct tagtagtttc
     1201 tcatctggcg atgagaaacg cgcggtgggg caagcccacg aaaaacaaaa actgataacg
     1261 gacaagatgt gtttttggag taccgccatc acgatgccgg taccaaaaac gatccgtcag
     1321 ggctgcgccc cgacaccctg ccaacacctc acgccgccag attaaaatct gtcagcgttc
     1381 gccgttcccg aaatcgtcaa acgctaaatc gcggggtccc gctggcttgc cagtgggttc
     1441 cgatttagtg attgacgaca gcacccgtaa aatacttaca gggggtggtt gtgatcacgc
     1501 agtgagcgca accacctgat aagcgttttt tgagggggta ggcatgatcg tcagactgga
     1561 taaccggctg tttgagattc tcgatgagat gggtgcgcat gtggatcggg aaatgttcat
     1621 ggcggcctat gcgcagcgga aggccgaaaa agaaaatgat ccccggcata tccgtcaacg
     1681 gaaactgacc aggttggctc atgatttgat gtcagaatcg gaccctgaat tgtgagcctc
     1741 gcgtgcgcgc gagggaaatc ggtcagaaaa tggccggagt ctcgtgcgcg cgatccttgt
     1801 atttatactt aagggataac tctggcgtca aaaaacgccg ccagcccttg tgccgcaagg
     1861 gtttgagtgt gatttgcctg aaaatggttt tggaagtatt ctgtcgggag tggtcgcaga
     1921 aaaaagcgac ccccgcaact gcgctaacag ttcgggggtg tgaccacctg taggaattcg
     1981 aatttggaca cgacaacaca ggtgatatgg caatgataac acgtcaaatg agccatcgcc
     2041 cagcatgggg cggtgtgc
//
