LOCUS       CP067583                2058 bp    DNA     circular BCT 01-MAR-2022
DEFINITION  Klebsiella pneumoniae strain ARLG-4874 plasmid pC606_4, complete
            sequence.
ACCESSION   CP067583
VERSION     CP067583.1
DBLINK      BioProject: PRJNA658369
            BioSample: SAMN17131921
KEYWORDS    .
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 2058)
  AUTHORS   Shropshire,W.C.
  TITLE     Highly Conserved and Distinct Accessory Genomes Drive Independent
            and Parallel Endemic Spread of Carbapenem-Resistant Klebsiella
            pneumoniae Clonal Groups 258 and 307
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2058)
  AUTHORS   Shropshire,W.C.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JAN-2021) HMH-CDI, Hackensack-Meridian Health Center
            for Discovery and Innovation, 340 Kingsland Street, Building 102,
            Nutley, NJ 07110, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 2020
            Assembly Method                   :: Flye v. 2.7
            Assembly Name                     :: C606
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 125x
            Sequencing Technology             :: Oxford Nanopore GridION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2021 15:18:25
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 5.0
            Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
            Genes (total)                     :: 5,564
            CDSs (total)                      :: 5,441
            Genes (coding)                    :: 5,325
            CDSs (with protein)               :: 5,325
            Genes (RNA)                       :: 123
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 11
            Pseudo Genes (total)              :: 116
            CDSs (without protein)            :: 116
            Pseudo Genes (ambiguous residues) :: 0 of 116
            Pseudo Genes (frameshifted)       :: 56 of 116
            Pseudo Genes (incomplete)         :: 56 of 116
            Pseudo Genes (internal stop)      :: 26 of 116
            Pseudo Genes (multiple problems)  :: 21 of 116
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..2058
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="ARLG-4874"
                     /isolation_source="urine"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="pC606_4"
                     /geo_loc_name="USA: South"
                     /collection_date="2017"
                     /collected_by="MDRO network"
     gene            complement(join(2026..2058,1..159))
                     /locus_tag="JJ665_27815"
     CDS             complement(join(2026..2058,1..159))
                     /locus_tag="JJ665_27815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020324555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="UME18129.1"
                     /translation="MIVRLDNRLFEILDEMGAHVDREMFMAAYAQRKAEKENDPRHIRQ
                     RKLTRLAHDLMSESDPEL"
                     /name="hypothetical protein"
     gene            complement(713..1702)
                     /locus_tag="JJ665_27820"
     CDS             complement(713..1702)
                     /locus_tag="JJ665_27820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020240588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="UME18130.1"
                     /translation="MQNPELQNLTDYSPSDAPWDAHRSVSDDVGGIYLLAAEYERYGAR
                     MASCGGLLRFGWSTLKETGETRLRLREAHFCRVRHCPVCQWRRSLMWQARFYQSLPRIV
                     ADYPDSRWMFLTLTVRNCAIEELGETLSRMNTAFQRLKDRKEFRPVQGWIRTTEVTRGS
                     DGSAHPHFHTLMMVPPGMLNGKSYVRHERWVELWRECLRVSYDPNVDVRAVKPRKPKDG
                     ESLACATAELVRGAVAETLKYSTKPADMVADPKWFLELTRQTHKRRFVATGGALKDVLK
                     LDQETDADMVIGDDISEGDDDGSRIAFEWKTEVKKYRRSPTKDKTESD"
                     /name="protein rep"
     Typing          796..987
                     /name="ColpVC"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="98.446"
                     /coverage="100.0"
                     /evalue="2.86e-91"
ORIGIN
        1 atgagccaac ctggtcagtt tccgttgacg gatatgccgg ggatcatttt ctttttcggc
       61 cttccgctgc gcataggccg ccatgaacat ttcccgatcc acatgcgcac ccatctcatc
      121 gagaatctca aacagccggt tatccagtct gacgatcatg cctaccccct caaaaaacgc
      181 ttatcaggtg gttgcgctca ctgcgtgatc acaaccaccc cctgtaagta ttttacgggt
      241 gctgtcgtca atcactaaat cggaacccac tggcaagcca gcgggacccc gcgatttagc
      301 gtttgacgat ttcgggaacg gcgaacgctg acagatttta atctggcggc gtgaggtgtt
      361 ggcagggtgt cggggcgcag ccctgacgga tcgtttttgg taccggcatc gtgatggcgg
      421 tactccaaaa acacatcttg tccgttatca gtttttgttt ttcgtgggct tgccccaccg
      481 cgcgtttctc atcgccagat gagaaactac taagcgcgcc ttccggaaaa ttaccggaag
      541 aaaaacccag gttcggaatc cgaactcagt aatcgagtga cgtcactttg cggcgttagc
      601 cctatcctgc atcggagtaa aatcaatcgg acaagatgtg actttggtac accgccacca
      661 aggtgacgga tgcccaaagc cctcatggtc agggcgcagc cccgacaccc tgttagtctg
      721 attcggtttt atctttcgtc ggcgaacgcc ggtacttttt gacctcggtc ttccactcga
      781 acgcgatgcg ggaaccgtca tcatcgccct cggaaatatc atccccgatc accatgtcgg
      841 cgtcggtttc ctgatcgagt ttcagcacgt ctttgagtgc gccgccggtc gccacaaagc
      901 ggcgcttgtg cgtctggcgg gtcagttcga ggaaccattt aggatcggcc accatgtcgg
      961 ccggcttcgt ggaatatttc agggtttcgg ccactgcgcc gcgcaccagt tcggcggtcg
     1021 cgcaggccag cgattcgccg tccttcggct tgcggggttt cactgcccgg acatcgacat
     1081 tcggatcgta actgacccgc aggcactcac gccacagctc aacccagcgt tcatgcctga
     1141 cgtaactctt cccgttaagc atgcccggcg gaaccatcat cagggtgtgg aagtgcgggt
     1201 gtgcgctgcc gtcactgccg cgggtgactt ccgtggtgcg tatccagccc tgaactggtc
     1261 ggaactcttt acggtccttc agtcgctgga aagccgtgtt catccggctc agcgtctcgc
     1321 ccagctcctc gatcgcgcag ttgcgcacgg tcagggtcag aaacatccag cgggaatcgg
     1381 ggtaatccgc cacgatacgc ggcagggact ggtagaaacg ggcttgccac atcagggagc
     1441 gcctccactg gcagacagga cagtgccgga cacggcagaa atgcgcctca cgcagcctca
     1501 ggcgcgtttc tccggtttct ttgagggtag accacccaaa cctcagtaaa ccgccacagg
     1561 aggccatacg cgccccgtag cgctcatatt cagccgcaag caggtaaatc cctcccacgt
     1621 cgtcagaaac gcttctgtga gcgtcccacg gcgcatctga gggggagtag tcagttaggt
     1681 tctggagttc aggattttgc atgcacaccg ccccatgctg ggcgatggct catttgacgt
     1741 gttatcattg ccatatcacc tgtgttgtcg tgtccaaatt cgaattccta caggtggtca
     1801 cacccccgaa ctgttagcgc agttgcgggg gtcgcttttt tctgcgacca ctcccgacag
     1861 aatacttcca aaaccatttt caggcaaatc acactcaaac ccttgcggca caagggctgg
     1921 cggcgttttt tgacgccaga gttatccctt aagtataaat acaaggatcg cgcgcacgag
     1981 actccggcca ttttctgacc gatttccctc gcgcgcacgc gaggctcaca attcagggtc
     2041 cgattctgac atcaaatc
//
