LOCUS       CP067542                2495 bp    DNA     circular BCT 01-MAR-2022
DEFINITION  Klebsiella pneumoniae strain ARLG-10779 plasmid pC691_6, complete
            sequence.
ACCESSION   CP067542
VERSION     CP067542.1
DBLINK      BioProject: PRJNA658369
            BioSample: SAMN17131923
KEYWORDS    .
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 2495)
  AUTHORS   Shropshire,W.C.
  TITLE     Highly Conserved and Distinct Accessory Genomes Drive Independent
            and Parallel Endemic Spread of Carbapenem-Resistant Klebsiella
            pneumoniae Clonal Groups 258 and 307
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2495)
  AUTHORS   Shropshire,W.C.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JAN-2021) HMH-CDI, Hackensack-Meridian Health Center
            for Discovery and Innovation, 340 Kingsland Street, Building 102,
            Nutley, NJ 07110, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 2020
            Assembly Method                   :: Flye v. 2.7
            Assembly Name                     :: C691
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 288x
            Sequencing Technology             :: Oxford Nanopore GridION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2021 15:19:52
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 5.0
            Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
            Genes (total)                     :: 5,811
            CDSs (total)                      :: 5,686
            Genes (coding)                    :: 5,578
            CDSs (with protein)               :: 5,578
            Genes (RNA)                       :: 125
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 88
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 108
            CDSs (without protein)            :: 108
            Pseudo Genes (ambiguous residues) :: 0 of 108
            Pseudo Genes (frameshifted)       :: 42 of 108
            Pseudo Genes (incomplete)         :: 64 of 108
            Pseudo Genes (internal stop)      :: 17 of 108
            Pseudo Genes (multiple problems)  :: 15 of 108
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..2495
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="ARLG-10779"
                     /isolation_source="other"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="pC691_6"
                     /geo_loc_name="USA: South"
                     /collection_date="2017"
                     /collected_by="MDRO network"
     gene            complement(88..279)
                     /locus_tag="JJ660_29045"
     CDS             complement(88..279)
                     /locus_tag="JJ660_29045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001046776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="UMD70007.1"
                     /translation="MTLSDDERHLLVSVVSVWLRRAGGDAGAMMLDAYRQILSETEPAV
                     RTVMLEFLESVRIHYISS"
                     /name="hypothetical protein"
     gene            1514..1741
                     /locus_tag="JJ660_29050"
     CDS             1514..1741
                     /locus_tag="JJ660_29050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010615788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YgdI/YgdR family lipoprotein"
                     /protein_id="UMD70005.1"
                     /translation="MKKIFVSVFAAAVALSALTGCTRTSYAIHTNDGRTIVSDGKPKES
                     DSGLLGYTDANGVKQQINKTDVKEVSEIPH"
                     /name="YgdI/YgdR family lipoprotein"
     gene            2107..2292
                     /locus_tag="JJ660_29055"
     CDS             2107..2292
                     /locus_tag="JJ660_29055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012814655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="UMD70006.1"
                     /translation="MTRQESAALNMAKFIRAQTLLLLERLEQMDLDEAAGCCEHLHDQA
                     EALYAMLNAQIGEENA"
                     /name="Rop family plasmid primer RNA-binding protein"
     Typing          complement(2340..2427)
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="6.86e-39"
     Typing          571..1099
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="88.598"
                     /coverage="88.0"
                     /evalue="0.0"
ORIGIN
        1 tcactcgtcc ataacagcat catggaacga cgaccaccgt ccgtgacggc cgcctcgttt
       61 aagtatggac agaaatacag aaaatgctca ggacgaaatg taatgaatgc gaacggattc
      121 aagaaattcg agcatgacag tccttacggc cggttcggtt tcagacaaaa tctgccggta
      181 tgcatccagc atcatggctc cggcatcccc tccggcacgc cgtagccaga ccgaaacaac
      241 ggacacaagc aggtgtcgct catcatcact aagagtcatc agggctccgg aagaaaaacc
      301 aaacatggct tacctactgt taacggcaac gcagaagaaa ggtttacagg gtagcgggca
      361 gggatgaaaa aaaaaaaatt gcagtcaggc cggaacggct gctgaaccgg tacaggcggg
      421 ttccgggcgc agcgccggac cagtcacgga gcactagcgg agtgtatact ggcttaagat
      481 gtagcatggc agtaacacat agcattaatg ccacataaga caggcgcaga aagtgaaaga
      541 aaacgcgtca ggagaaaatg tgatacagaa tatattccgc ttcctcgctc actgactcgc
      601 tccgctcggt cgttcggctg cggcgagcgg gacgggctta cggatggatc agaaatttcc
      661 tgggggatgc caggaagata cttaacgaag aaagcataag gccgcgccaa agccgttttt
      721 ccataggctc cgcccccctg acaagcatca cagaatctga cgctcaaatc agtggtggcg
      781 aaacccgatg cggcttaaag ataccaggcg tttccccctg gtggctccct cgtgctcccc
      841 cgcattcctg cctttcggtt taccggtgtc actccgctgt tatggccgcg gtttctcatt
      901 ccacgcctga cactcagttc cgggaaggca gttcgctcca ggatggactg tatgcacgaa
      961 ccccccgttc agtccgaccg ctgcgcctta tccggtaact atcaacttga gtccaacccg
     1021 gaaagacacg actaatcgcc attggcaacg gccattggca aacaggatgt gcgagagatg
     1081 tctcaagagt tcttgaagtg gcggccttag tgaggctaca ctgaaaggac aaatttggtg
     1141 acatgtctcg cacaagactg ttaccacggt taggggatct gccaggatta cctaaccttc
     1201 gaaaaaccac ctgccagggt ggttttttcg tttacagggc aagagattac gcgcggaaaa
     1261 aaaggatctc aagaagatcc tttataaatt agacatccaa cctcacaaag aggaatactt
     1321 aaatcatctt ggtatatgta tcggccggat tacatctcat ataagcctcc tccccgcctg
     1381 acaccacact ttgaccatag cacctcgcgc ctaactcgat atacagccca ccatcaagcc
     1441 tcttttcaca taaaaaatga cctatagtta gatggttagt gaccaaaact gatatggata
     1501 aaaggagctg gctttgaaaa agatttttgt ttcagtgttc gcagcggcag ttgcgctttc
     1561 agccctcacc ggctgcacgc gcacaagcta tgccatacac accaatgacg gtcgcactat
     1621 tgtcagcgac ggcaaaccta aagaatcaga ctcaggcctg cttggctata cagacgcgaa
     1681 tggtgtcaaa cagcagatca ataaaaccga cgttaaagaa gtctccgaaa ttccgcactg
     1741 agcatcttct ccgaaaaagg ccgctaatgt ggcctttttc tttacctgtg gttctccgcc
     1801 aaaatcccag caaattgcat caccaaagct aaaagctttc agggttgtct aaaaagcaca
     1861 agacataaga ggaagtgcgg tattttataa tcaagccccc aagaatttac cataacatcc
     1921 gttgcccgca ccgcctgaga cgcgttcagc gcgttcctga cgaaaccatg acaaaaacca
     1981 caacaaacca ccccggaacc cgtcagaaac gcgcctgtta aattttaacg gcatgcatga
     2041 ctatgcacca gaatgacgcc atgctctttt cacgcaaaaa tcatcaccag acggggaaaa
     2101 tcaccagtga ccagacagga atccgccgcc ctcaatatgg ccaaatttat ccgcgcacag
     2161 acacttctcc tccttgagcg gctcgagcag atggatctgg atgaggctgc cggctgctgt
     2221 gagcacctgc acgatcaggc cgaagcgctt tacgccatgc tgaacgcaca gataggcgag
     2281 gaaaatgcgt gaaaatcggt gaacgggtgc gcaattcagt gcgcggccgt gaggcgatgg
     2341 cggggtgtcg gggcgcagcc ctgaccaggg tatttgtgat gccggcgcgt gcgcggtatt
     2401 acaaatgcac atcctgtccc ggaacggaca ccgggaaaca gcaaaaaaaa ccgggcggca
     2461 cgcccggaac tcaatcaagt tagattagat tactc
//
