LOCUS       CP067541                3843 bp    DNA     circular BCT 01-MAR-2022
DEFINITION  Klebsiella pneumoniae strain ARLG-10779 plasmid pC691_5, complete
            sequence.
ACCESSION   CP067541
VERSION     CP067541.1
DBLINK      BioProject: PRJNA658369
            BioSample: SAMN17131923
KEYWORDS    .
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 3843)
  AUTHORS   Shropshire,W.C.
  TITLE     Highly Conserved and Distinct Accessory Genomes Drive Independent
            and Parallel Endemic Spread of Carbapenem-Resistant Klebsiella
            pneumoniae Clonal Groups 258 and 307
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3843)
  AUTHORS   Shropshire,W.C.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JAN-2021) HMH-CDI, Hackensack-Meridian Health Center
            for Discovery and Innovation, 340 Kingsland Street, Building 102,
            Nutley, NJ 07110, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 2020
            Assembly Method                   :: Flye v. 2.7
            Assembly Name                     :: C691
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 288x
            Sequencing Technology             :: Oxford Nanopore GridION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2021 15:19:52
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 5.0
            Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
            Genes (total)                     :: 5,811
            CDSs (total)                      :: 5,686
            Genes (coding)                    :: 5,578
            CDSs (with protein)               :: 5,578
            Genes (RNA)                       :: 125
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 88
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 108
            CDSs (without protein)            :: 108
            Pseudo Genes (ambiguous residues) :: 0 of 108
            Pseudo Genes (frameshifted)       :: 42 of 108
            Pseudo Genes (incomplete)         :: 64 of 108
            Pseudo Genes (internal stop)      :: 17 of 108
            Pseudo Genes (multiple problems)  :: 15 of 108
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..3843
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="ARLG-10779"
                     /isolation_source="other"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="pC691_5"
                     /geo_loc_name="USA: South"
                     /collection_date="2017"
                     /collected_by="MDRO network"
     gene            52..240
                     /locus_tag="JJ660_29020"
     CDS             52..240
                     /locus_tag="JJ660_29020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000165985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="UMD70001.1"
                     /translation="MTKQESAALNMAKFIRAQSLLLLEKLDVLDLDDEAADCERMHEQA
                     EALYQKLSARFGIQDGE"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            complement(288..488)
                     /locus_tag="JJ660_29025"
     CDS             complement(288..488)
                     /locus_tag="JJ660_29025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001046776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="UMD70004.1"
                     /translation="MNLCPDERLLFVRMISAMLRRSGGDAGAFMFEAYRHIVSDTNQAR
                     RSYMLDLLESVRHDYVHGGYT"
                     /name="hypothetical protein"
     gene            1228..1341
                     /locus_tag="JJ660_29030"
     CDS             1228..1341
                     /locus_tag="JJ660_29030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007772075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="UMD70002.1"
                     /translation="MHEPPVQSDCCAFSGNYRLESNPERHDKTPLAAATGN"
                     /name="replication initiation protein"
     gene            1677..3221
                     /locus_tag="JJ660_29035"
     CDS             1677..3221
                     /locus_tag="JJ660_29035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008926622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain-containing protein"
                     /protein_id="UMD70003.1"
                     /translation="MRNNQPVTNNEFFFDDDATLVSTTDQESLITYANDAFIHVSGFSE
                     SELHNQPHNIVRHPDMPKAAFADMWATLQQGKPWSALVKNRRKNGDFYWVRSNVTPVVR
                     DGITRGYMSVRTKPSTGEINYANNLYNKLLSDSGRYYSFKNGMIVRKGWRRLLTLDKTI
                     PIRWRIRLYLSSLLPLFIIANWLLGIDSITSLISSSILTVALLAMIFIFDRKISAPIEN
                     ISKQAINVVTGSCHKIEQSERVDEIGMTLRSISQLGLMFRWLVNDVSNQASVVLKKSSD
                     IAQNNKSLSKHTENSNINIQQTAAAMNELIATVKSNAETSQEVKEISEKTQDTALNSEK
                     IMVKMMEMMSEISDSSKRIATITSVIDSIAFQTNILALNAAVEAARAGEQGKGFSVVAG
                     EVRHLAQRSAKAANEIKELIESSSNKVTAGTEYTEKTGKSMGEVLSKVKGMAELITQIS
                     AATSEQFIALQEISSAVENLDNISNKNSARVSQNAMASTELAHQANRLSDAINVFR"
                     /name="PAS domain-containing protein"
     gene            3456..3638
                     /locus_tag="JJ660_29040"
     CDS             3456..3638
                     /locus_tag="JJ660_29040"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="UMD70000.1"
                     /translation="MLSRIEMYISYAIFELLSQQRCVSLLAILDILNRKLQEGGHSESE
                     HLAILNAIKEVEKNI"
                     /name="hypothetical protein"
     Typing          complement(694..867)
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="92.571"
                     /coverage="100.0"
                     /evalue="1.23e-64"
     Typing          791..1337
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="91.818"
                     /coverage="90.0"
                     /evalue="0.0"
ORIGIN
        1 aatgaagtaa gatttcagtc tgcgatcacc ataaaaccgg gaaaaagccg tatgacaaaa
       61 caggaatcag ccgcactgaa catggcaaaa tttatccggg cgcagtcgct gctgctgctc
      121 gaaaaactcg acgtgctcga tcttgatgac gaggcagccg actgtgagcg aatgcacgaa
      181 caggctgaag cgctttatca gaagctgagc gcacgcttcg gtatacagga cggcgaataa
      241 agagacgaaa agaacgctca cttagacgaa aagcgtatcc agggcaacta tgtatatcca
      301 ccgtgtacat agtcatgcct gacgctttcg agcaggtcga gcatgtagga acgacgagct
      361 tgattggtat cggacacaat atggcgatac gcctcaaaca taaaagcacc cgcatcaccg
      421 cccgaacggc gaagcatagc ggaaatcatc cgcacaaaga gcagacgttc atcggggcaa
      481 aggttcataa gttctcctgg tgaaaaacca aacatgaagc acccatctat taacgtcagc
      541 tgtgaacgct tcattagaag aaaataggta aacccgggaa aaagatccaa acgttaacat
      601 cacaggtaaa cagaaacgtc gggtcgatcg ggaaattctt tcccggacgg cgcggggttg
      661 ggcaagccgc aggcgcgtca gtgcttttag cgggtgtcgg ggcgcagccc tgaaccagtc
      721 acgtagcgct agcggagtgt atactggctt aatatgtcga cacggatgcg gaggtcagtg
      781 aagtgcttca tgtggaagga ggaaaaaggc agcaccggcg cgtcagcaga atatacgaga
      841 caggagatat tccgcttcct cgctcactga ctcgctgcgc tcggtcgttc ggctgcggcg
      901 agcggtgtgg gcttacaaac tgggcggaaa tttcctggag gatgccaggg cgatacttag
      961 caaagaagaa gcaaggccac ggcgttgccg tttttccata ggctccgccc ccctgacaag
     1021 catcacgaaa tctgacgctc aaatcagtgg tggcgaaacc cgacaggact taaagatacc
     1081 aggcgtttcc ccctggtggc tccctcgtgc gctctcctgt tcctgccttt cggtttaccg
     1141 gtgtcaatcc gctgttatgg ccgcgtttat ctcattccac gcctgacact cggttccggg
     1201 aaggcagttc gctccaagct ggactgtatg cacgaacccc ccgttcagtc cgactgctgc
     1261 gccttttccg gtaactatcg tcttgagtcc aacccggaaa gacacgacaa aacgccactg
     1321 gcagcagcca ctggtaactg atttagagga gttagtcttg aagttatgcg tcggttaagg
     1381 ctaaactaaa cgaactgttt tggtgactgc gctcctccaa gccagttacc ttggttcaaa
     1441 gagttgctgc tctgagaacc ttcgaaaaaa ccgccttgct gggcggtttt ttcgtttaca
     1501 agaaaggaga ttacgacgac ttgtaaagga tctcaagaag ataaaacaaa tcaatatcaa
     1561 acttcccttt catttccctg cattaatgat aggtataaca ctaaagtgcc tatcgccgtt
     1621 ttccgaaaac aactgcaaac gatgagtagt ctaactacaa aaatgtaagg cacactatgc
     1681 gaaacaacca acctgttaca aataatgaat ttttttttga tgatgatgcc accttagtgt
     1741 caacgacaga tcaagaaagc ctcataacct atgcgaatga tgcatttatt cacgttagcg
     1801 gctttagtga aagtgaacta cataatcaac cacataatat cgtccggcac cctgacatgc
     1861 caaaggcagc ttttgcggat atgtgggcaa cccttcagca gggtaaaccg tggtctgctc
     1921 tagtcaaaaa ccgtcgtaaa aatggggact tttattgggt tcgctctaac gttacccccg
     1981 tagtccgtga tggaataaca cgcggatata tgtctgtgcg cactaaacca tcaacaggcg
     2041 agataaatta tgcaaataat ttatataaca aactcttaag tgacagcggg agatattatt
     2101 catttaaaaa tggaatgata gtaagaaaag gatggagaag gttattaaca ctagataaga
     2161 caattccaat tcgctggcga atcagactct atttatcatc cttgctacca ctttttatta
     2221 ttgcaaattg gttgctaggg atagattcaa tcacatcatt aatttcctca tcaatattaa
     2281 cagttgcact acttgcaatg attttcattt tcgatagaaa gatatccgca ccgatagaga
     2341 acatatcgaa acaagccata aatgtagtaa ctggctcttg ccataagata gaacaaagtg
     2401 aaagggttga cgaaataggg atgactctca gatcaataag ccagttagga cttatgttcc
     2461 gatggttagt taatgatgta agcaatcagg caagtgtggt attaaaaaaa agctccgaca
     2521 tagcacaaaa taacaaatca ttaagcaagc acacagaaaa ctcaaatata aacattcagc
     2581 aaaccgctgc tgccatgaat gaattgattg caacagtaaa atccaacgcc gaaacatcac
     2641 aagaagtcaa agaaatttct gaaaaaactc aagacactgc gttaaatagc gaaaaaatca
     2701 tggtaaaaat gatggaaatg atgtctgaaa tctcagatag ttcaaaaaga atagcaacta
     2761 taaccagtgt gattgatagc atagcgtttc agactaacat actagctctt aatgcagcag
     2821 tggaagcagc acgcgcggga gagcagggta aaggtttttc tgttgttgca ggtgaagttc
     2881 gacatcttgc acaacgtagc gccaaagccg caaatgaaat aaaagaatta atagaaagca
     2941 gttctaataa agttactgcc ggaaccgagt acacagaaaa aacaggaaaa tccatgggtg
     3001 aagttttatc caaagtaaaa ggaatggcag aattgatcac acaaataagc gctgcgacat
     3061 ctgaacagtt tattgcatta caggaaatta gctccgctgt ggaaaactta gacaatatat
     3121 ctaataagaa ctcagctcgc gtatcgcaaa atgcaatggc atcaactgaa cttgcgcacc
     3181 aagcaaaccg tttgtcagat gcaatcaatg tttttagata aggcctagct atagaacccc
     3241 cacttagccc ggagtgggga ttctaaaaaa tcattaactt tttaaaaaaa caacgacaca
     3301 taacacaaaa aaccatctgt ttagaataaa gtataactgc gctataggtt taacaaagga
     3361 aagggaactc ttaaaaaaga gtaaagcgaa gcaagacttt tattaaaaga agctgttgat
     3421 aagctatgac cataataatt tttgaggaga ttaaaatgct ctcgagaatt gaaatgtata
     3481 ttagctatgc gattttcgaa ttactatcac aacaacgctg cgtttcacta cttgctatcc
     3541 ttgatatttt aaaccgtaaa ctccaagaag gtggacattc agaaagtgaa catttagcga
     3601 tacttaacgc gattaaagag gtagagaaaa atatctgaat aaacatcaga ccttcaagtt
     3661 caaaaacgat tgtgctgcat acaatcagct gaatttacca taacatccgt tgtctgcact
     3721 gcctgagagg ccctcagcgc gtttctgcgg cctccggcct gaaacataca cctttctgtg
     3781 cccatatcga gaaaaaacgc ccctgatgat ttctgcgtac ctgcatggct atgcactcaa
     3841 gtg
//
