LOCUS       CP067520                2058 bp    DNA     circular BCT 01-MAR-2022
DEFINITION  Klebsiella pneumoniae strain ARLG-8044 plasmid pC706_4, complete
            sequence.
ACCESSION   CP067520
VERSION     CP067520.1
DBLINK      BioProject: PRJNA658369
            BioSample: SAMN17131925
KEYWORDS    .
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 2058)
  AUTHORS   Shropshire,W.C.
  TITLE     Highly Conserved and Distinct Accessory Genomes Drive Independent
            and Parallel Endemic Spread of Carbapenem-Resistant Klebsiella
            pneumoniae Clonal Groups 258 and 307
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2058)
  AUTHORS   Shropshire,W.C.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JAN-2021) HMH-CDI, Hackensack-Meridian Health Center
            for Discovery and Innovation, 340 Kingsland Street, Building 102,
            Nutley, NJ 07110, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 2020
            Assembly Method                   :: Flye v. 2.7
            Assembly Name                     :: C706
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 148x
            Sequencing Technology             :: Oxford Nanopore GridION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2021 15:16:33
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 5.0
            Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
            Genes (total)                     :: 5,533
            CDSs (total)                      :: 5,409
            Genes (coding)                    :: 5,294
            CDSs (with protein)               :: 5,294
            Genes (RNA)                       :: 124
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 115
            CDSs (without protein)            :: 115
            Pseudo Genes (ambiguous residues) :: 0 of 115
            Pseudo Genes (frameshifted)       :: 51 of 115
            Pseudo Genes (incomplete)         :: 59 of 115
            Pseudo Genes (internal stop)      :: 25 of 115
            Pseudo Genes (multiple problems)  :: 20 of 115
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..2058
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="ARLG-8044"
                     /isolation_source="other"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="pC706_4"
                     /geo_loc_name="USA: South"
                     /collection_date="2017"
                     /collected_by="MDRO network"
     gene            join(1473..2058,1..404)
                     /locus_tag="JJ677_27660"
     CDS             join(1473..2058,1..404)
                     /locus_tag="JJ677_27660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020240588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="UMD42656.1"
                     /translation="MQNPELQNLTDYSPSDAPWDAHRSVSDDVGGIYLLAAEYERYGAR
                     MASCGGLLRFGWSTLKETGETRLRLREAHFCRVRHCPVCQWRRSLMWQARFYQSLPRIV
                     ADYPDSRWMFLTLTVRNCAIEELGETLSRMNTAFQRLKDRKEFRPVQGWIRTTEVTRGS
                     DGSAHPHFHTLMMVPPGMLNGKSYVRHERWVELWRECLRVSYDPNVDVRAVKPRKPKDG
                     ESLACATAELVRGAVAETLKYSTKPADMVADPKWFLELTRQTHKRRFVATGGALKDVLK
                     LDQETDADMVIGDDISEGDDDGSRIAFEWKTEVKKYRRSPTKDKTESD"
                     /name="protein rep"
     gene            958..1149
                     /locus_tag="JJ677_27665"
     CDS             958..1149
                     /locus_tag="JJ677_27665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020324555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="UMD42657.1"
                     /translation="MIVRLDNRLFEILDEMGAHVDREMFMAAYAQRKAEKENDPRHIRQ
                     RKLTRLAHDLMSESDPEL"
                     /name="hypothetical protein"
     Typing          complement(131..322)
                     /name="ColpVC"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="98.446"
                     /coverage="100.0"
                     /evalue="2.86e-91"
ORIGIN
        1 tgtggcgtga gtgcctgcgg gtcagttacg atccgaatgt cgatgtccgg gcagtgaaac
       61 cccgcaagcc gaaggacggc gaatcgctgg cctgcgcgac cgccgaactg gtgcgcggcg
      121 cagtggccga aaccctgaaa tattccacga agccggccga catggtggcc gatcctaaat
      181 ggttcctcga actgacccgc cagacgcaca agcgccgctt tgtggcgacc ggcggcgcac
      241 tcaaagacgt gctgaaactc gatcaggaaa ccgacgccga catggtgatc ggggatgata
      301 tttccgaggg cgatgatgac ggttcccgca tcgcgttcga gtggaagacc gaggtcaaaa
      361 agtaccggcg ttcgccgacg aaagataaaa ccgaatcaga ctaacagggt gtcggggctg
      421 cgccctgacc atgagggctt tgggcatccg tcaccttggt ggcggtgtac caaagtcaca
      481 tcttgtccga ttgattttac tccgatgcag gatagggcta acgccgcaaa gtgacgtcac
      541 tcgattactg agttcggatt ccgaacctgg gtttttcttc cggtaatttt ccggaaggcg
      601 cgcttagtag tttctcatct ggcgatgaga aacgcgcggt ggggcaagcc cacgaaaaac
      661 aaaaactgat aacggacaag atgtgttttt ggagtaccgc catcacgatg ccggtaccaa
      721 aaacgatccg tcagggctgc gccccgacac cctgccaaca cctcacgccg ccagattaaa
      781 atctgtcagc gttcgccgtt cccgaaatcg tcaaacgcta aatcgcgggg tcccgctggc
      841 ttgccagtgg gttccgattt agtgattgac gacagcaccc gtaaaatact tacagggggt
      901 ggttgtgatc acgcagtgag cgcaaccacc tgataagcgt tttttgaggg ggtaggcatg
      961 atcgtcagac tggataaccg gctgtttgag attctcgatg agatgggtgc gcatgtggat
     1021 cgggaaatgt tcatggcggc ctatgcgcag cggaaggccg aaaaagaaaa tgatccccgg
     1081 catatccgtc aacggaaact gaccaggttg gctcatgatt tgatgtcaga atcggaccct
     1141 gaattgtgag cctcgcgtgc gcgcgaggga aatcggtcag aaaatggccg gagtctcgtg
     1201 cgcgcgatcc ttgtatttat acttaaggga taactctggc gtcaaaaaac gccgccagcc
     1261 cttgtgccgc aagggtttga gtgtgatttg cctgaaaatg gttttggaag tattctgtcg
     1321 ggagtggtcg cagaaaaaag cgacccccgc aactgcgcta acagttcggg ggtgtgacca
     1381 cctgtaggaa ttcgaatttg gacacgacaa cacaggtgat atggcaatga taacacgtca
     1441 aatgagccat cgcccagcat ggggcggtgt gcatgcaaaa tcctgaactc cagaacctaa
     1501 ctgactactc cccctcagat gcgccgtggg acgctcacag aagcgtttct gacgacgtgg
     1561 gagggattta cctgcttgcg gctgaatatg agcgctacgg ggcgcgtatg gcctcctgtg
     1621 gcggtttact gaggtttggg tggtctaccc tcaaagaaac cggagaaacg cgcctgaggc
     1681 tgcgtgaggc gcatttctgc cgtgtccggc actgtcctgt ctgccagtgg aggcgctccc
     1741 tgatgtggca agcccgtttc taccagtccc tgccgcgtat cgtggcggat taccccgatt
     1801 cccgctggat gtttctgacc ctgaccgtgc gcaactgcgc gatcgaggag ctgggcgaga
     1861 cgctgagccg gatgaacacg gctttccagc gactgaagga ccgtaaagag ttccgaccag
     1921 ttcagggctg gatacgcacc acggaagtca cccgcggcag tgacggcagc gcacacccgc
     1981 acttccacac cctgatgatg gttccgccgg gcatgcttaa cgggaagagt tacgtcaggc
     2041 atgaacgctg ggttgagc
//
