LOCUS       CP067515                2058 bp    DNA     circular BCT 01-MAR-2022
DEFINITION  Klebsiella pneumoniae strain ARLG-8045 plasmid pC708_6, complete
            sequence.
ACCESSION   CP067515
VERSION     CP067515.1
DBLINK      BioProject: PRJNA658369
            BioSample: SAMN17131926
KEYWORDS    .
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 2058)
  AUTHORS   Shropshire,W.C.
  TITLE     Highly Conserved and Distinct Accessory Genomes Drive Independent
            and Parallel Endemic Spread of Carbapenem-Resistant Klebsiella
            pneumoniae Clonal Groups 258 and 307
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2058)
  AUTHORS   Shropshire,W.C.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JAN-2021) HMH-CDI, Hackensack-Meridian Health Center
            for Discovery and Innovation, 340 Kingsland Street, Building 102,
            Nutley, NJ 07110, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 2020
            Assembly Method                   :: Flye v. 2.7
            Assembly Name                     :: C708
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 145x
            Sequencing Technology             :: Oxford Nanopore GridION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2021 16:15:05
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 5.0
            Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
            Genes (total)                     :: 5,516
            CDSs (total)                      :: 5,391
            Genes (coding)                    :: 5,244
            CDSs (with protein)               :: 5,244
            Genes (RNA)                       :: 125
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 88
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 147
            CDSs (without protein)            :: 147
            Pseudo Genes (ambiguous residues) :: 0 of 147
            Pseudo Genes (frameshifted)       :: 58 of 147
            Pseudo Genes (incomplete)         :: 90 of 147
            Pseudo Genes (internal stop)      :: 27 of 147
            Pseudo Genes (multiple problems)  :: 26 of 147
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..2058
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="ARLG-8045"
                     /isolation_source="other"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="pC708_6"
                     /geo_loc_name="USA: South"
                     /collection_date="2017"
                     /collected_by="MDRO network"
     gene            join(1467..2058,1..398)
                     /locus_tag="JJ671_27575"
     CDS             join(1467..2058,1..398)
                     /locus_tag="JJ671_27575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020240588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="UMD37113.1"
                     /translation="MQNPELQNLTDYSPSDAPWDAHRSVSDDVGGIYLLAAEYERYGAR
                     MASCGGLLRFGWSTLKETGETRLRLREAHFCRVRHCPVCQWRRSLMWQARFYQSLPRIV
                     ADYPDSRWMFLTLTVRNCAIEELGETLSRMNTAFQRLKDRKEFRPVQGWIRTTEVTRGS
                     DGSAHPHFHTLMMVPPGMLNGKSYVRHERWVELWRECLRVSYDPNVDVRAVKPRKPKDG
                     ESLACATAELVRGAVAETLKYSTKPADMVADPKWFLELTRQTHKRRFVATGGALKDVLK
                     LDQETDADMVIGDDISEGDDDGSRIAFEWKTEVKKYRRSPTKDKTESD"
                     /name="protein rep"
     gene            952..1143
                     /locus_tag="JJ671_27580"
     CDS             952..1143
                     /locus_tag="JJ671_27580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020324555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="UMD37114.1"
                     /translation="MIVRLDNRLFEILDEMGAHVDREMFMAAYAQRKAEKENDPRHIRQ
                     RKLTRLAHDLMSESDPEL"
                     /name="hypothetical protein"
     Typing          complement(125..316)
                     /name="ColpVC"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="98.446"
                     /coverage="100.0"
                     /evalue="2.86e-91"
ORIGIN
        1 gtgagtgcct gcgggtcagt tacgatccga atgtcgatgt ccgggcagtg aaaccccgca
       61 agccgaagga cggcgaatcg ctggcctgcg cgaccgccga actggtgcgc ggcgcagtgg
      121 ccgaaaccct gaaatattcc acgaagccgg ccgacatggt ggccgatcct aaatggttcc
      181 tcgaactgac ccgccagacg cacaagcgcc gctttgtggc gaccggcggc gcactcaaag
      241 acgtgctgaa actcgatcag gaaaccgacg ccgacatggt gatcggggat gatatttccg
      301 agggcgatga tgacggttcc cgcatcgcgt tcgagtggaa gaccgaggtc aaaaagtacc
      361 ggcgttcgcc gacgaaagat aaaaccgaat cagactaaca gggtgtcggg gctgcgccct
      421 gaccatgagg gctttgggca tccgtcacct tggtggcggt gtaccaaagt cacatcttgt
      481 ccgattgatt ttactccgat gcaggatagg gctaacgccg caaagtgacg tcactcgatt
      541 actgagttcg gattccgaac ctgggttttt cttccggtaa ttttccggaa ggcgcgctta
      601 gtagtttctc atctggcgat gagaaacgcg cggtggggca agcccacgaa aaacaaaaac
      661 tgataacgga caagatgtgt ttttggagta ccgccatcac gatgccggta ccaaaaacga
      721 tccgtcaggg ctgcgccccg acaccctgcc aacacctcac gccgccagat taaaatctgt
      781 cagcgttcgc cgttcccgaa atcgtcaaac gctaaatcgc ggggtcccgc tggcttgcca
      841 gtgggttccg atttagtgat tgacgacagc acccgtaaaa tacttacagg gggtggttgt
      901 gatcacgcag tgagcgcaac cacctgataa gcgttttttg agggggtagg catgatcgtc
      961 agactggata accggctgtt tgagattctc gatgagatgg gtgcgcatgt ggatcgggaa
     1021 atgttcatgg cggcctatgc gcagcggaag gccgaaaaag aaaatgatcc ccggcatatc
     1081 cgtcaacgga aactgaccag gttggctcat gatttgatgt cagaatcgga ccctgaattg
     1141 tgagcctcgc gtgcgcgcga gggaaatcgg tcagaaaatg gccggagtct cgtgcgcgcg
     1201 atccttgtat ttatacttaa gggataactc tggcgtcaaa aaacgccgcc agcccttgtg
     1261 ccgcaagggt ttgagtgtga tttgcctgaa aatggttttg gaagtattct gtcgggagtg
     1321 gtcgcagaaa aaagcgaccc ccgcaactgc gctaacagtt cgggggtgtg accacctgta
     1381 ggaattcgaa tttggacacg acaacacagg tgatatggca atgataacac gtcaaatgag
     1441 ccatcgccca gcatggggcg gtgtgcatgc aaaatcctga actccagaac ctaactgact
     1501 actccccctc agatgcgccg tgggacgctc acagaagcgt ttctgacgac gtgggaggga
     1561 tttacctgct tgcggctgaa tatgagcgct acggggcgcg tatggcctcc tgtggcggtt
     1621 tactgaggtt tgggtggtct accctcaaag aaaccggaga aacgcgcctg aggctgcgtg
     1681 aggcgcattt ctgccgtgtc cggcactgtc ctgtctgcca gtggaggcgc tccctgatgt
     1741 ggcaagcccg tttctaccag tccctgccgc gtatcgtggc ggattacccc gattcccgct
     1801 ggatgtttct gaccctgacc gtgcgcaact gcgcgatcga ggagctgggc gagacgctga
     1861 gccggatgaa cacggctttc cagcgactga aggaccgtaa agagttccga ccagttcagg
     1921 gctggatacg caccacggaa gtcacccgcg gcagtgacgg cagcgcacac ccgcacttcc
     1981 acaccctgat gatggttccg ccgggcatgc ttaacgggaa gagttacgtc aggcatgaac
     2041 gctgggttga gctgtggc
//
