LOCUS       CP066334                3071 bp    DNA     circular BCT 07-JAN-2021
DEFINITION  Salmonella enterica subsp. enterica serovar Albany strain
            CFSAN103854 plasmid pUWI-F1, complete sequence.
ACCESSION   CP066334
VERSION     CP066334.1
DBLINK      BioProject: PRJNA186035
            BioSample: SAMN14677212
KEYWORDS    .
SOURCE      Salmonella enterica subsp. enterica serovar Albany
  ORGANISM  Salmonella enterica subsp. enterica serovar Albany
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 3071)
  AUTHORS   Maguire,M., Khan,A., Adesiyun,A., Georges,K. and
            Gonzalez-Escalona,N.
  TITLE     Closed genomes of eight multidrug resistance Salmonella enterica
            strains isolated from chicken in Trinidad and Tobago by using a
            combination of long and short reads
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3071)
  CONSRTM   GenomeTrakr network: Whole genome sequencing for foodborne pathogen
            traceback
  TITLE     Direct Submission
  JOURNAL   Submitted (01-MAY-2020) Center for Food Safety and Applied
            Nutrition, US Food and Drug Administration, 5100 Paint Branch Pkwy,
            College Park, MD, USA
REFERENCE   3  (bases 1 to 3071)
  AUTHORS   Maguire,M. and Gonzalez-Escalona,N.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-DEC-2020) ORS/DM/MMSB, Food and Drug
            Administration-College Park, 5001 Campus Drive, College Park, MD
            20740-3835, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. v0.4.8
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 133x
            Sequencing Technology :: Illumina MiSeq, Nanopore GridION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 12/17/2020 14:53:45
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 5.0
            Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
            Genes (total)                     :: 4,755
            CDSs (total)                      :: 4,633
            Genes (coding)                    :: 4,549
            CDSs (with protein)               :: 4,549
            Genes (RNA)                       :: 122
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 16
            Pseudo Genes (total)              :: 84
            CDSs (without protein)            :: 84
            Pseudo Genes (ambiguous residues) :: 0 of 84
            Pseudo Genes (frameshifted)       :: 43 of 84
            Pseudo Genes (incomplete)         :: 47 of 84
            Pseudo Genes (internal stop)      :: 18 of 84
            Pseudo Genes (multiple problems)  :: 21 of 84
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..3071
                     /organism="Salmonella enterica subsp. enterica serovar
                     Albany"
                     /mol_type="genomic DNA"
                     /strain="CFSAN103854"
                     /serovar="Albany"
                     /isolation_source="cloacae swab- farm"
                     /sub_species="enterica"
                     /db_xref="taxon:211968"
                     /plasmid="pUWI-F1"
                     /geo_loc_name="Trinidad and Tobago"
                     /collection_date="2019"
                     /collected_by="University of the West Indies, St. Augustine
                     Campus- Faculty of Medical Sciences- Veterinary Public
                     Health Laboratory, School of Veterinary Medicine"
     gene            complement(591..1235)
                     /locus_tag="HIX65_23765"
     CDS             complement(591..1235)
                     /locus_tag="HIX65_23765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017900990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinolone resistance pentapeptide repeat protein
                     QnrB19"
                     /protein_id="QQL60879.1"
                     /translation="MTLALVGEKIDRNRFTGEKVENSTFFNCDFSGADLSGTEFIGCQF
                     YDRESQKGCNFSRAMLKDAIFKSCDLSMADFRNVSALGIEIRHCRAQGADFRGASFMNM
                     ITTRTWFCSAYITNTNLSYANFSKVVLEKCELWENRWMGTQVLGATFSGSDLSGGEFST
                     FDWRAANFTHCDLTNSELGDLDIRGVDLQGVKLDSYQASLLMERLGIAVIG"
                     /name="quinolone resistance pentapeptide repeat protein
                     QnrB19"
     gene            complement(1329..1484)
                     /gene="pspF"
                     /locus_tag="HIX65_23770"
                     /pseudo=""
     CDS             complement(1329..1484)
                     /gene="pspF"
                     /locus_tag="HIX65_23770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309907.2"
                     /note="transcriptional activator for pspABCE which are
                     induced in response to phage proteins, membrane altering
                     stresses, and impaired proton expor; incomplete; partial on
                     complete genome; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="phage shock protein operon transcriptional
                     activator"
                     /name="pspF"
     gene            2422..2571
                     /locus_tag="HIX65_23775"
     CDS             2422..2571
                     /locus_tag="HIX65_23775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017880354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="QQL60878.1"
                     /translation="MPSEYDEQRGSTDTQLPGEYDLFDLMAKVTEEILHAPVDSGPPVG
                     REAL"
                     /name="hypothetical protein"
     ARG             complement(595..1235)
                     /name="qnrB19"
                     /gene="qnrB19"
                     /gene_name="quinolone resistance pentapeptide repeat
                     protein QnrB19"
                     /tool="amrfinderplus"
                     /drug_class="QUINOLONE"
                     /identity="100.0"
                     /coverage="100.0"
     Typing          2214..2387
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="2.5600000000000002e-86"
     Typing          complement(1744..2235)
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="92.51"
                     /coverage="81.0"
                     /evalue="0.0"
ORIGIN
        1 tgctgacagc gggttttccg gctgcgccgg caacgcttca cggccacgca ataaattgcg
       61 tccccgttca ccgttttcgg atgggaagaa cgccggaaac aggacttccc ctggctgaat
      121 ggtgtgaatt tccgcgctat gcacttgcgc gcatactcat gcatgccgta aaaacagagc
      181 ctgcgcgttt ctggcgggtt ttcgggtggt ttgttgcctg ttttaccggt ttcccgtcag
      241 aaacgccctc agagcctctc aggcggtgca cgcaagggat gttatgttta atcggtctga
      301 ccgtcaggta caaaaaaaag cccttagggg gctttttttt tgctatgagt tagccatatt
      361 ttcgttaaga catggcttca tgattcggga gtggttattc gttgttctcg cgaaaatgaa
      421 ttggttagat attcatcaaa ttcctgtcca gaatgcagca ttagatggca tgtcgttgat
      481 gcggtaggtc aggatattcg tccactggag aaaacgtttc acaatgcttg ccaggagtcg
      541 tactggttaa aagtaaatcg tcaaacgcat ctcccggtgt aaacgctgaa ctaaccaatc
      601 acagcgatgc caagccgctc catgagcaac gatgcctggt agctgtctaa cttaacgcct
      661 tgtaaatcaa caccccgaat atctaagtca cctaactccg aattggtcag atcgcaatgt
      721 gtgaagtttg ctgctcgcca gtcgaaagtc gaaaactcgc cgccggagag atctgaacca
      781 ctgaacgtcg cacccagtac ctgagtcccc atccagcggt tttcccacag ctcacacttt
      841 tccaacacga ctttcgaaaa attggcgtag cttagattag tattagtgat atatgcgctg
      901 caaaaccagg tgcgcgtggt gatcatattc ataaagcttg caccgcggaa atctgcgcct
      961 tgtgcgcggc agtggcgaat ttcaatgccc aaggcactga cgttgcggaa atctgccatt
     1021 gataaatcac agcttttgaa aatggcatct ttcagcattg cgcgactaaa attgcaccct
     1081 ttctgacttt cgcgatcata gaactggcag ccgataaatt cagtgccgct caggtcggca
     1141 cctgaaaaat cgcagttaaa aaatgtacta ttttcaactt tctcaccggt gaagcgattt
     1201 ctgtcaattt tttcgccaac taatgccaga gtcatatcta tgcctgtgtt tttatacagt
     1261 aatgacgcca tggtaaacct tatgacgtta tgcgtcaaac ccgccagtat gacacctgca
     1321 aatgcgtatt agatctggtg tttcttcagc aaggcacgta gctgatgata agtcagaccc
     1381 agtaattcag cggctttttt ctggttaaat ttagcctgct gtaagctggt ttgtagaaag
     1441 tctttctctt gctgctgctg gaattcacgc agatccagcg ttataacgat gtgtatccta
     1501 tgtgctcgga ttggatagat ttccattacg gtgaaggatc ttcttgagat cctttctgtg
     1561 gcgtcgtaat ctcttgctct gtaaacgaaa aaaccgccct gcaaggcggt ttttcgaagg
     1621 ttctcagagc agcaactctt tgaaccgtgg taactggctt acgaggagcg cagtaaccaa
     1681 atctgttctt tcagtttagc cttaacaggc gcataacttc aagactaact cctctaaatc
     1741 agttaccagt ggctgctgcc agtggcgata agtcgtgtct ttccgggttg gactcaagat
     1801 gatagttacc ggataaggcg cagcagtcgg actgaacggg gggttcgtgc atacagtcca
     1861 tccaggagcg aactgccttc gcggaactga gtgtcaggcg tggaatgaga taaacgcggc
     1921 cataacagcg gaatgacacc ggtaaaccga aaggcaggaa tgcgggggag cacgagggag
     1981 ccaccagggg gaaacgcctg gtatctttaa gccgcatcgg gtttcgccac cactgatttg
     2041 agcgtcagat ttcatgatgt ttgtcagggg ggcggagcct atggaaaaac ggcttcgccg
     2101 cggccttatc tcttccctgt taagctcctt cctggtatct cccaggaaat ttccgccccg
     2161 cctgtaagcc ggcaccgctc gccgcagccg aacgaccgag cgcagcgagt cagtgagcga
     2221 ggaagcggaa tatatcctgt actacatatc ctgctgacgc gctggtgccg ccttttttct
     2281 cctgctacat gaagcacttc actgatttcc acatccgtgc caacatagtc agccagtata
     2341 cactccgcta gcgctacgtg actggttcag ggctgcgccc cgaaacccgc taacaacctc
     2401 tctgctactg gatatcaccc catgccatct gaatatgatg aacaacgggg ttcgactgat
     2461 acgcagcttc ccggcgaata tgaccttttt gatttaatgg cgaaggttac tgaagagatc
     2521 ctgcatgccc ctgtggattc tgggccgcct gtcggccggg aagcgttata gctttttcgc
     2581 ttgcccgcgt acgtggtaat acgccggtat taccttttat ttctttattt tcatgtaatt
     2641 acagtgggtt tttaatacct gggtattact cgtgaaaacg aaacattact tttttttctt
     2701 ttaattcatg cagttgcgat gaaaatcgcg gctgcgttag gtgtatgacc attttgaggt
     2761 tgaaaaataa tcaaccatgg cgggtgattt acgcaggtta aggggagatc gtgacaaaaa
     2821 aaagcgttcc tcactgtatc gttcatgcct gcatgaacgg gttattcttc ctgactacag
     2881 aattacatcg ctccttcagt tcatacatca cttttacaac acttttacaa cactccttcg
     2941 gcctgtacat cacttttaca acacttttgc atcactttta catcatttat acatcacttt
     3001 tacatcattc cttcagctca tacgtcactt tcatcctctg tgccatttgt acatcacccc
     3061 cttcctgaac g
//
