LOCUS       CP066332                1749 bp    DNA     circular BCT 07-JAN-2021
DEFINITION  Salmonella enterica strain UWI-PS 6 isolate CFSAN103852 plasmid
            pUWI-PS6.4, complete sequence.
ACCESSION   CP066332
VERSION     CP066332.1
DBLINK      BioProject: PRJNA186035
            BioSample: SAMN16678612
KEYWORDS    .
SOURCE      Salmonella enterica
  ORGANISM  Salmonella enterica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 1749)
  AUTHORS   Maguire,M., Khan,A., Adesiyun,A., Georges,K. and
            Gonzalez-Escalona,N.
  TITLE     Closed genomes of eight multidrug resistance Salmonella enterica
            strains isolated from chicken in Trinidad and Tobago by using a
            combination of long and short reads
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1749)
  CONSRTM   GenomeTrakr network: Whole genome sequencing for foodborne pathogen
            traceback
  TITLE     Direct Submission
  JOURNAL   Submitted (06-NOV-2020) Center for Food Safety and Applied
            Nutrition, US Food and Drug Administration, 5100 Paint Branch Pkwy,
            College Park, MD, USA
REFERENCE   3  (bases 1 to 1749)
  AUTHORS   Maguire,M. and Gonzalez-Escalona,N.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-DEC-2020) ORS/DM/MMSB, Food and Drug
            Administration-College Park, 5001 Campus Drive, College Park, MD
            20740-3835, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. v0.4.8
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 120x
            Sequencing Technology :: Illumina MiSeq, Nanopore GridION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 12/17/2020 14:54:52
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 5.0
            Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
            Genes (total)                     :: 4,976
            CDSs (total)                      :: 4,853
            Genes (coding)                    :: 4,752
            CDSs (with protein)               :: 4,752
            Genes (RNA)                       :: 123
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 15
            Pseudo Genes (total)              :: 101
            CDSs (without protein)            :: 101
            Pseudo Genes (ambiguous residues) :: 0 of 101
            Pseudo Genes (frameshifted)       :: 43 of 101
            Pseudo Genes (incomplete)         :: 57 of 101
            Pseudo Genes (internal stop)      :: 24 of 101
            Pseudo Genes (multiple problems)  :: 20 of 101
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..1749
                     /organism="Salmonella enterica"
                     /mol_type="genomic DNA"
                     /strain="UWI-PS 6"
                     /isolate="CFSAN103852"
                     /isolation_source="environmental"
                     /db_xref="taxon:28901"
                     /plasmid="pUWI-PS6.4"
                     /geo_loc_name="Trinidad and Tobago"
                     /collection_date="2016"
                     /collected_by="Professor Emeritus Abiodun A. Adesiyun DVM
                     (ABU), MPH, Ph.D., University of the West Indies, St.
                     Augustine Campus- Faculty of Medical Sciences- Veterinary
                     Public Health Laboratory, School of Veterinary Medicine"
     gene            214..1203
                     /locus_tag="ITK26_24880"
     CDS             214..1203
                     /locus_tag="ITK26_24880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020240588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="QQL70402.1"
                     /translation="MKNPELQNLTDYSPSDAPWDAHRSVSDDVGGIYLLAAEYERYGAR
                     MASCGGLLRFGWSTLKETGETRLRLREAHFCRVRHCPVCQWRRSLMWQARFYQSLPRIV
                     ADYPDSRWMFLTLTVRNCAIGELGDTLSRMNTAFQRLKDRKEFRPVQGWIRTTEVTRGS
                     DGSAHPHFHTLMMVPPGMLNGKSYVKHARWVELWRECLRVSYDPNVDVRAVKPRKPKDG
                     ELLACATAELVRGAVAETLKYSTKPADMVADPEWFLELTRQTHKRRFVATGGALKDVLK
                     LDQETDADMVIGDDISEGDDDGSRIAFEWKIEVKKYRRSPTKDKTESE"
                     /name="protein rep"
     Typing          complement(932..1121)
                     /name="ColpVC"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="96.859"
                     /coverage="99.0"
                     /evalue="3.7200000000000003e-85"
ORIGIN
        1 cccttgtgcc gcaagggttt cagcgtgatt tgcctgaaaa tgactttgaa gttattctgt
       61 cgggagtggt cgcgttaaaa gcgacccccg caacgacggc catcgttcgg gggcgtgacc
      121 acctgtagga attctatttt gcgacagaca acacaggtga tacggcaatg ataacacgtc
      181 aagtgagcca tcgcccagta tggggcggtg cgcatgaaaa atcctgaact ccagaacctc
      241 acggactatt ccccctcaga tgcgccctgg gacgctcaca gaagcgtttc tgacgacgtg
      301 ggagggattt acctgcttgc ggccgaatat gagcgctacg gggcgcgtat ggcctcctgc
      361 ggcggtttac tgcgtttcgg gtggtctacc ctcaaagaaa ccggagaaac gcgcctgagg
      421 ctgcgtgagg cgcatttctg ccgtgtccgg cactgtcctg tctgccagtg gaggcgctcc
      481 ctgatgtggc aagcccgttt ctaccagtcc ctgccgcgta tcgtggcgga ttaccccgat
      541 tcccgctgga tgttcctgac cctgaccgtg cgcaactgtg cgatcgggga gctgggcgat
      601 acgctgagcc ggatgaacac ggctttccag cggctgaagg atcgcaaaga gttcagacca
      661 gttcagggat ggatccgcac cacggaagtc acccgcggca gtgacggcag cgcacacccg
      721 cacttccaca cactgatgat ggttccgcct ggcatgctta acgggaagag ttacgtcaaa
      781 catgcgcgct gggttgagct gtggcgggag tgccttcggg tcagctacga tccgaatgtc
      841 gatgtccggg cagtgaaacc ccggaagccg aaggacggcg aattgctggc ctgcgcgacc
      901 gccgaactgg tgcgcggcgc ggtggccgag accctgaaat attccacgaa gccggccgac
      961 atggtcgccg atcctgaatg gttcctcgaa ctgacccgcc agacgcacaa gcgccgcttt
     1021 gtggcgaccg gcggcgcact caaagacgta ttgaaactcg atcaggaaac cgatgccgac
     1081 atggtgatcg gggatgatat ttccgagggc gatgatgacg gttcccgcat cgcgttcgag
     1141 tggaaaatcg aggtcaaaaa ataccggcgt tcgccgacga aagataaaac cgaatcagag
     1201 taaaaacact gcgatgcagg atagggcaaa cgccgcaaaa tgacgtcatc cgacatcatt
     1261 ccgccgcgtt cgcccagtga cctgcagtcg gctctggggt gtcggggctg cgccctgacc
     1321 tggggttttg gattgcggcc atcgtgatgg cggtaataca aaacgcacgg gacaagatgt
     1381 gtttttggag taccgccgac acgcgacgga cagtccaaaa tatcttggtc agggctgcgc
     1441 cccgacaccc tgccaacacc tcacgccgcc agattaaaat ctgccagcgt tcgccgttcc
     1501 tgaaatcgtc aaacgctaaa tcgtggggtc ccgctggctt gccagtgggt tccgatttag
     1561 tgattgacga gcgcacccgt aaaacactgc cgacaggtgg ttgtgatcac gcagtgagcg
     1621 caaccacctg ataagcgttt ttggggtttg tggggtccga tttaacgtgg attttggggg
     1681 caaaaaaatc gcgcgcgttc cttgtattta tacttaaggg ataactctgg cgttaaaaat
     1741 aagcctcag
//
