LOCUS       CP066327                1395 bp    DNA     circular BCT 07-JAN-2021
DEFINITION  Salmonella enterica strain UWI_PP122 isolate CFSAN103840 plasmid
            pUWI-PP122.2, complete sequence.
ACCESSION   CP066327
VERSION     CP066327.1
DBLINK      BioProject: PRJNA186035
            BioSample: SAMN16678602
KEYWORDS    .
SOURCE      Salmonella enterica
  ORGANISM  Salmonella enterica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 1395)
  AUTHORS   Maguire,M., Khan,A., Adesiyun,A., Georges,K. and
            Gonzalez-Escalona,N.
  TITLE     Closed genomes of eight multidrug resistance Salmonella enterica
            strains isolated from chicken in Trinidad and Tobago by using a
            combination of long and short reads
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1395)
  CONSRTM   GenomeTrakr network: Whole genome sequencing for foodborne pathogen
            traceback
  TITLE     Direct Submission
  JOURNAL   Submitted (06-NOV-2020) Center for Food Safety and Applied
            Nutrition, US Food and Drug Administration, 5100 Paint Branch Pkwy,
            College Park, MD, USA
REFERENCE   3  (bases 1 to 1395)
  AUTHORS   Maguire,M. and Gonzalez-Escalona,N.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-DEC-2020) ORS/DM/MMSB, Food and Drug
            Administration-College Park, 5001 Campus Drive, College Park, MD
            20740-3835, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. v0.4.8
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 100x
            Sequencing Technology :: Illumina MiSeq, Nanopore GridION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 12/17/2020 14:38:22
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 5.0
            Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
            Genes (total)                     :: 4,385
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 4,166
            CDSs (with protein)               :: 4,166
            Genes (RNA)                       :: 117
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 11
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 46 of 102
            Pseudo Genes (incomplete)         :: 51 of 102
            Pseudo Genes (internal stop)      :: 29 of 102
            Pseudo Genes (multiple problems)  :: 21 of 102
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..1395
                     /organism="Salmonella enterica"
                     /mol_type="genomic DNA"
                     /strain="UWI_PP122"
                     /isolate="CFSAN103840"
                     /isolation_source="environmental"
                     /db_xref="taxon:28901"
                     /plasmid="pUWI-PP122.2"
                     /geo_loc_name="Trinidad and Tobago"
                     /collection_date="2018"
                     /collected_by="Professor Emeritus Abiodun A. Adesiyun DVM
                     (ABU), MPH, Ph.D., University of the West Indies, St.
                     Augustine Campus- Faculty of Medical Sciences- Veterinary
                     Public Health Laboratory, School of Veterinary Medicine"
ORIGIN
        1 ccgcaccatc tcacccgtca cgccaccaca taccgggaac tgccgccaag gtctaactca
       61 accaatctag ccgcgctaca tacggttttt gtggcaactc atcaggtgtc cgctgtcgat
      121 gaaactctct gcgccggtag cggaactctc acgcgtgcgg ttgccgtcgt cacagctccc
      181 ccaaccgcaa acggtctttg caaacacgca atcatctgca aaaacaggat tttttcggga
      241 ttctggggag gctgtgctgt cggtaatgct tgaagaatac agaaggttca tgcaaactga
      301 atgaactggt ttccgttgtc gtagcaacag actccacagg aacattgagg aggtggaaaa
      361 cctcaatgaa cccgaagaag ctcgcctaat ggcgggcttt ttcgttctac gcccaccgac
      421 gaaagatcgc aagtgcaata acacgttttt tcacgtcttt acgttaaaaa agtccaaaaa
      481 ccgtgttttt cccccgtcca caccccaaaa acgcgtcaca aacgttttaa gcgcgttgca
      541 tagctatgca caagacagat gcgtgatcgg tttcgcgcgc tccgaccgtc gaactggtca
      601 aaacgacacg ttttcatgag ggaaaacgcc tcacggtacg cggaattttt tcgcgtgccg
      661 tgaggcgttg gcggggtgtc ggggcgcagc cctgaccagg atgtttggag taccgaccgt
      721 gtggcgggaa tacaaacatg tatcttgtcc cgattttttt caccagaacg ctggcagagc
      781 gtcggcagtt ctgcgccgtt aagccctccg caggagcgca cagtttctcg acgaaggaga
      841 gaaactacta agtgcgcatc cgcacttttc aggcggatga tttttggctc cgctgccgcc
      901 ctcaccgtgc aaaattctgt caaccggaca gcaaatcatt ttgccgtttt cgtgtcgcag
      961 ccgttccgca agatcggcga actgacggcg ggataagcca gtatacacat cgctatcgct
     1021 ctgtgactgg gtcagggctt cgccccgaca ccccgcatca gtgcgtacgc gctcaatgta
     1081 actaccggtt ctcttccgct tcctcgccca ctcgctcact acgttcggtc gctggggctg
     1141 cggcgagcgg tgtgatcact ctcacatgat gcagatccgt tttttttttt gccctggagt
     1201 tatcaggtgt tgcggtgctc atgggatcgt gcgatatgcc ggatggtgga aggtcggagg
     1261 gaacggcaac aactcacccc tcccagtgaa gggacgggta gtttgccgct ctcgatatgc
     1321 cggacggagc caaggccatc gatcacgggg cgcgtcggtg gaagaacccg cgcctgcgtg
     1381 acgtatgcgt cttcg
//
