LOCUS       CP066199                6647 bp    DNA     circular BCT 22-DEC-2020
DEFINITION  Escherichia coli strain Res13-Lact-PEB09-33 plasmid unnamed23,
            complete sequence.
ACCESSION   CP066199
VERSION     CP066199.1
DBLINK      BioProject: PRJNA662792
            BioSample: SAMN16304201
KEYWORDS    .
SOURCE      Escherichia coli
  ORGANISM  Escherichia coli
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Escherichia.
REFERENCE   1  (bases 1 to 6647)
  AUTHORS   Poulin-Laprade,D., Brouard,J.-S., Gagnon,N., Turcotte,A.,
            Langlois,A., Matte,J.J., Carrillo,C.D., Zaheer,R., McAllister,T.,
            Topp,E. and Talbot,G.
  TITLE     Resistance determinants and their genetic context in bacteria from a
            longitudinal study of pigs reared under conventional and
            antibiotic-free husbandry practices
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 6647)
  AUTHORS   Poulin-Laprade,D. and Brouard,J.-S.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-DEC-2020) Sciences and Technology, Agriculture and
            Agri-Food Canada, 2000 College, Sherbrooke, Quebec J1M 0C8, Canada
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date          :: 23-NOV-2018
            Assembly Method        :: Unicycler v. 0.4.7
            Assembly Name          :: 3G3
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 1.00x
            Sequencing Technology  :: Oxford Nanopore MinION and Illumina MiSeq
            ##Genome-Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..6647
                     /organism="Escherichia coli"
                     /mol_type="genomic DNA"
                     /strain="Res13-Lact-PEB09-33"
                     /serotype="O82 (99.84):H31 (100.0)"
                     /isolation_source="feces"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:562"
                     /plasmid="unnamed23"
                     /geo_loc_name="Canada: Quebec"
                     /collection_date="13-Mar-2017"
                     /collected_by="Agriculture and Agri-Food Canada"
     Typing          4515..4602
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="6.86e-39"
     Typing          complement(3946..4501)
                     /name="rep_cluster_2350"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="95.699"
                     /coverage="99.0"
                     /evalue="0.0"
     Typing          5256..6646
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="99.784"
                     /coverage="98.0"
                     /evalue="0.0"
ORIGIN
        1 ttgagcgagc agacagaacg cttgagccag ttatacagcg agaactggag ataagagagg
       61 aacggctgat acaggagcgc gaacatgtgt tatccctgga acgggagcgt cagccggaaa
      121 tacaggaacg cacgctggat ggcccttcgc tgggatggtg aaaccatgaa aaatggcagc
      181 ttcagtggat taagtggggg taatgtggcc tgtaccctct ggttgcatag gtattcatac
      241 ggttaaaatt tatcaggcgc gatcgcggca gtttttcggg tggtttgttg ccatttttac
      301 ctgtctgctg ccgtgatcgc gctgaacgcg ttttagcggt gcgtacaatt aagggattat
      361 ggtaaatcca cttactgtct gccctcgtag ccatcgagat aaaccgcaga aatcgtgtca
      421 gccagcagcc tggatttttt cggggtaagg tctttgctgc ggtaatcagt acccgcaaat
      481 tgagttgtgc cccggagtga gtttaaaaat tcctggctgt gaaactgctg aatgcgttgt
      541 tgcacatcac tccgtgattt tcctgtcgct ttatctttag ctcccatatc ccagaactgc
      601 cgaaaaaaag gcaccatcat tcgtgttgtg tcggcttttt gggtggaaaa gttgggatca
      661 aaaccgtcat cagaagcata tacgtaatgc cgggtatgtt gttccacgct gccctttggg
      721 gtacaggctg tgagagctac tgttgctgtt atcatggcga taagacaaag tttgtttccg
      781 gtacgtctca tgagtgtctc cctaccttaa agtatttatt ctcggtgagt tattatccga
      841 agactatttt atcatcagtc tctgacagcg ttcagcgacc gaacaacctg gaccagaatc
      901 cccgtttctt ttccagttcc agtgcctgcc tgagctgggc tatctcattt tgtagctgtt
      961 cccgttctgc ttcctggcgt ctgcgatcca tatcctgtgc ctgtttatcc tcaagcatca
     1021 gcgtcaggca ttgtttcagc tcattcagtt cccggagaat gcgttctgtc tgctgatcat
     1081 gtggattttc tgcatgtccc tcactgtgcc tttctggtgt ctcattctgc tttaattcgc
     1141 cgtatgcccg gatcagttca ctggtttcaa actcccgtcg tccgtccctg ccggtacggt
     1201 aactgacaag gcctgcgcgc atatcacggt aaaactgtga acgcgatctg cctgtcattt
     1261 ttagtgcgtc ccggagtgtg tgccatgcca taaagtgaca gtgtcccata gatgtctcat
     1321 ctcatagttt cagtaaaaca taatgaggtc tgagaacggt aatgtttgtg ctggtttttg
     1381 tggcatcggg cgagaatagc gcgtggtgtg aaagactgtt tttttgatcg ttttcacaaa
     1441 aatggaagtc cacagtcttg acagggaaaa tgcagcggcg tagcttttat gctgtatata
     1501 aaaccagtgg ttatatgtac agtatttatt tttaacttat tgttttaaaa gtcaaagagg
     1561 attttataat ggaaaccgcg gtagcgtact ataaagatgg tgttccttat gatgataagg
     1621 gacaggtaat tattactctt ttgaatggta ctcctgacgg gagtggctct ggcggcggag
     1681 gtggaaaagg aggcagtaaa agtgaaagtt ctgcagctat tcatgcaact gctaaatggt
     1741 ctactgctca attaaagaaa acacaggcag agcaggctgc ccgggcaaaa gctgcagcgg
     1801 aagcacaggc gaaagcaaag gcaaacaggg atgcgctgac tcagcgcctg aaggatatcg
     1861 tgaatgaggc tcttcgtcac aatgcctcac gtacgccttc agcaacagag cttgctcatg
     1921 ctaataatgc agctatgcag gcggaagcag agcgtttgcg ccttgcgaaa gcagaagaaa
     1981 aagcccgtaa agaagcggaa gcagcagaaa aggcttttca ggaagcagaa caacgacgta
     2041 aagagattga acgggagaag gctgaaacag aacgccagtt gaaactggct gaagctgaag
     2101 agaaacgact ggctgcattg agtgaagaag ctaaagctgt tgagatcgcc caaaaaaaac
     2161 tttctgctgc acaatctgaa gtggtgaaaa tggatggaga gattaagact ctcaattctc
     2221 gtttaagctc cagtatccat gcccgtgatg cagaaatgaa aacgctcgct ggaaaacgaa
     2281 atgaactggc tcaggcatcc gctaaatata aagaactgga tgagctggtc aaaaaactat
     2341 caccaagagc caatgatccg cttcagaacc gtcctttttt tgaagcaacc agacgacggg
     2401 ttggggccgg taagattaga gaagaaaaac aaaaacaggt aacagcatca gaaacacgta
     2461 ttaaccggat aaatgctgat ataactcaga tccagaaggc tatttctcag gtcagtaata
     2521 atcgtaatgc cggtatcgct cgtgttcatg aagctgaaga aaatttgaaa aaagcacaga
     2581 ataatctcct taattcacag attaaggatg ctgttgatgc aacagttagc ttttatcaaa
     2641 cgctgactga aaaatatggt gaaaaatatt cgaaaatggc acaggaactt gctgataagt
     2701 ctaaaggtaa gaaaatcggc aatgtgaatg aagctctcgc tgcttttgaa aaatacaagg
     2761 atgttttaaa taagaaattc agcaaagccg atcgtgatgc tatttttaat gcgttggcat
     2821 cggtgaagta tgatgactgg gctaaacatt tagatcagtt tgccaagtac ttgaagatta
     2881 cggggcatgt ttcttttgga tatgatgtgg tatctgatat cctaaaaatt aaggatacag
     2941 gtgactggaa gccactattt cttacattag agaagaaagc tgcagatgca ggggtgagtt
     3001 atgttgttgc tttacttttt agcttgcttg ctggaactac attaggtatt tggggtattg
     3061 ctattgttac aggaattcta tgctcctata ttgataagaa taaacttaat actataaatg
     3121 aggtgttagg gatttaatta ttctttattg atataaaaag tcctagcaat ccaaatggga
     3181 ttgctaggac caaacaaagt agattatata gcataaatag gtttaatttt gctacggggg
     3241 cgttatttag gttttttctt ctttcgaaaa aatctttctt tatgaagtta aaagctatgt
     3301 attcaatagc atattttgaa tatggacata gaatagtgct tatcactatt gcatatagca
     3361 tcttatctga cacaaggaaa taataccctt cgctgttttt tgttataagg tatatatata
     3421 taagtgtgca gtacaggcca aataaaatat tttttatgta gtatcttaag ctcataaatt
     3481 aaacctcgcc atatattctt ttcattttat aaggatcgag ttatgaggaa aagatttttt
     3541 gtgggaatat tcgcgataaa cctccttgtt ggatgtcagg ctaactatat acgtgatgtt
     3601 cagggaggga ccatcgcacc atcctcctct tctaaactga cggggatcgc ggttcagtag
     3661 aaaagattaa aggatcttct tgagatcctt tttttctgcg cgtaatctgc tgcttgcaaa
     3721 caaaaaaacc accgctacca acggtggttt gtttgccgga tcaagagcta ccaactcttt
     3781 ttccgaaggt aactggcttc agcagagcgc agataccaaa tactgtcctt ctagtgtagc
     3841 cgtagtcggg ccactacttc aagaactctg tagcaccgtt tgtgccatca tcgctctgct
     3901 aatccggtta ccagtggctg ctgccagtgg cgttaaggcg tgccttaccg ggttggactc
     3961 aagacgatag ttaccggata aggcgcagcg gtcgggctga acggggggtt cgtgcacaca
     4021 gcccagcttg gagcgaacga cctacaccga actgagatac caacagcgtg agctatgaga
     4081 aagcgccacg cttcccgaag ggagaaaggc ggacaggtat ccggtaagcg gcagggtcgg
     4141 aacaggagag cgcacgaggg agcttccagg gggaaacgcc tggtatcttt atagtcctgt
     4201 cgggtttcgc cacctctgac ttgagcgtct atttttgtga tgctcgtcag gggggcggag
     4261 cctatggaaa aacgcctgct acgtggcctt cttcctgttc ctggtctttt gctcacatgt
     4321 tctttccggc cttatcccct gattctgtgg ataactgtgt taccgttttt gtgtgagtca
     4381 gtaccgctcg ccgcagtcga acgaccgagc gtagcgagtc agtgagcgag gaagcggaaa
     4441 agcgcctgga cgtgcatttt ctccttacgc atctgtgcgg catttcacac ccggcatggc
     4501 gtacttttca tacaatccgc actgatgccg catggttaag ccagtataca ctccgctatc
     4561 gctacgtgac tgggtcaggg ctgcgccccg acacccgcta aaacctgctg acgcgccctg
     4621 acgggcttgt cagctcccgg catccgctca cagacaagct gtgaccgtct ccgggagctg
     4681 catgtgtcag aggttttcac cgtcatcccc gaaacgtgcg aggcagctgc ggtaaagctc
     4741 atcggcgtgg tcgtgaagcg attcacaaat atcggcctgt tcatctgcgt ccagttcgtt
     4801 gagcttctcc agcagcgtta atgtctggct tctgataaag cgggccatgt taagggcggt
     4861 tttttcctgt ttagtcactg atgcctccgt gtaaggggga tttctgttca tggggtaatg
     4921 ataccgatga aacgcgagag gatgctcaca atacgggtta ctgatgatga acatgcccgg
     4981 ttacttgaac gctgtgaggg taaacaactg gcggtatgga tgcggcgggt ctgcctgggg
     5041 gagccggttg cccgttccgg aaaactgccg acactggcac cgccgttact gcgtcagctg
     5101 gccgccatcg gaaataacct gaatcagaca gcccgtaagg tgaacagcgg gcagtggtct
     5161 tccggtgacc gggttcaggt ggtggccgca ctgatggcca tcggggatga gctgcgccgg
     5221 ctgcgtctgg ctgtcaggga acagggggcg cgggatgata gttaaatttc atgccagggg
     5281 aaaaggtggt ggcagtggtc cggttgatta cctgctgggg agggagcgta accgcgaagg
     5341 cgcaacggtg cttcagggta atccggaaga agtccgggaa ctcatcgatg ccacgccatt
     5401 tgcgaagaaa tacacgtccg gtgttctgtc gttcgcggag aaggagctgc cgccgggagg
     5461 acgtgaaaaa gtgatggcga gctttgagcg tgtactgatg cccggtctcg aaaaaaatca
     5521 gtacagcatc ctgtgggtgg agcaccagga caagggacgg cttgagctga attttgtcat
     5581 tccgaacatg gagctacaga ccggaaaacg cctccagccg tactacgacc gcgcagacag
     5641 gcctagaatt gatgcctggc agacgctggt aaatcaccat tacgggctgc atgacccgaa
     5701 cgccccggag aaccgcagga cgctgacact ccctgataac ctgcctgaaa cgaaacaggc
     5761 gcttgctgag ggcgtcacgc gaggtataga tgcactttac catgccggag agataaaagg
     5821 ccgtcaggat gtgattcagg cgctcactga ggcggggctg gaagtggtca gggtgacgcg
     5881 aagcagtatc agcattgcag atccgaacgg cgggaagaat atcaggctga aaggagcatt
     5941 ttatgagcaa tcttttgcag acgggcgcgg agttcgagaa aaagctgaaa gagagagccg
     6001 aatctacaga gaaaatgctg aacaacgagt tcaggaggct cggcgaatct gtaagcgagg
     6061 ctgtgacatc aaacgagacg aaaatcagag acgctatagc cctgttcaca gcctcgacag
     6121 aggaatcgct ggaaaaacac cgggaagggg tgaaagaggc gatgatgcag cacaggaggg
     6181 acgtgttaaa gctggcaggg aatacgggca tgatgttact ggggatagtc tttctcctgt
     6241 ttaccgcgag tggcgggacg ctctggtatc ttggagggag gatacaggcg aacctggaag
     6301 aaatcaggaa gcaggaagag acattgcaga aactgaacgc gaagacatgg ggcgtggagt
     6361 ttgtgcagga cgggaacagg aaattccttg tccttccgta cgggaaatca gcggaggtga
     6421 ttccctttca ggggaaagag tgggtacatc tgaaggagtg acacagagtg acagagctgg
     6481 aaacacattt gctgaacgcc ttagagcagc tgcaacagga ctatatgcag cggctgagcg
     6541 aatgggagag cgccttcgtg gaattgcaga agatgttttc gcttacgcaa cgggacaacg
     6601 cgatgctgaa cgagcgggtc atgcagttga gtcagcaggt gcagcac
//
