LOCUS       CP064285                6738 bp    DNA     linear   BCT 12-NOV-2020
DEFINITION  Enterococcus faecium strain Cairo plasmid pEFAEC_CAIRO_frag4.
ACCESSION   CP064285
VERSION     CP064285.1
DBLINK      BioProject: PRJNA672694
            BioSample: SAMN16574827
KEYWORDS    .
SOURCE      Enterococcus faecium
  ORGANISM  Enterococcus faecium
            Bacteria; Bacillota; Bacilli; Lactobacillales; Enterococcaceae;
            Enterococcus.
REFERENCE   1  (bases 1 to 6738)
  AUTHORS   Broddrick,J.T., Szubin,R., Norsigian,C.J., Monk,J.M., Palsson,B.O.
            and Parenteau,M.N.
  TITLE     High-quality genome-scale models from error-prone, long-read
            assemblies
  JOURNAL   Front Microbiol (2020) In press
REFERENCE   2  (bases 1 to 6738)
  AUTHORS   Broddrick,J.T.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-OCT-2020) Exobiology Branch, NASA, Bldg N239 Rm 315,
            Moffett Field, CA 94035, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date          :: 20-APR-2019
            Assembly Method        :: Flye v. 2.6; Racon v. 1.4.7; Medaka v. 0.9
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 46x
            Sequencing Technology  :: Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..6738
                     /organism="Enterococcus faecium"
                     /mol_type="genomic DNA"
                     /strain="Cairo"
                     /isolation_source="clinical isolate"
                     /host="Homo sapiens"
                     /db_xref="taxon:1352"
                     /plasmid="pEFAEC_CAIRO_frag4"
                     /geo_loc_name="Egypt: Cairo"
                     /collection_date="06-Jul-2018"
     Typing          2599..3005
                     /name="rep_cluster_889"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 tgtatatgat ctaagtcttg cttctagtat gaatatgacc gatgtatacg aaaagttatt
       61 aatactagaa aatgaatatg atcaattcac ttcaaatcag cagcgaaaag taaagaaaca
      121 gatagactag aatagctatt ttcgaaaagc aatatctaag gtataagtta taccttaaat
      181 aattaaagta taagttatac catatatatt tagggtataa cttatacttt tattcttaaa
      241 aaccgctata tccaaacgtt tttagatatt attatttaag ttatactttt aatgttgacc
      301 atttccgata tataagttat actttaatta tcaattaaag attgggagga tttacatgga
      361 tacttttcaa gggactacat ttacagttgg caattttaaa ggaggagtag gtaaaactaa
      421 gatagtcagc atgcttgctt atgacaatgc aatgataaga aatagaaaaa cgcttattat
      481 tgatttagac cctcaagcga acttaacaca agtcatagca agaactttcg gtataaccga
      541 tatcaaaacc actataacaa atggtgtcgc aaatggagaa ttagcaagta gtattattaa
      601 ggtaaatgaa aatcttgacc ttctggcatg tgacactagt tttcgatcat tctccgcttt
      661 tgctaataaa catgaaaatg aattagacca agttactgtc ttgaaaaaat tacttcttcc
      721 aataaagaac aattatcaag aaatatttat tgatgtacca ccaaccatta gcgaattttc
      781 cgataatgct atggcagctt cagactattc gataatttca tttcaaacag ctgaagaatc
      841 cttagaggga gtcaacaaat atgtaaatta tcaaaaattc atggtcgata gatacgatct
      901 tgatttgcaa attatagata ttgtaccttg tatggtagaa ccaaatgatg attttgatga
      961 agaaatccta gaagaagcaa ttgaaaaata cggaaccgtg gtatccaaaa atctcattca
     1021 ttatcaaaaa agattgagaa ggtattctaa aattggtata catttaagaa aatacaaaaa
     1081 tggaaatttt gatcaatggg attataaagc acaccaagta tttataaata ttttggcaga
     1141 actagatgct agacaagagt ttttaaataa ataataagga gttgcataag taatgcctaa
     1201 agattttgat attcctaaaa tgatggagaa tggcgaattt gagccattat tacccaataa
     1261 caaacgccaa gatgtgaaaa taagcggtga atataacttt agcaatagtg cattgagtaa
     1321 cacaaaaaat attacattga aaaaaagagg ccgaccagtt tcaattcctg ataaaagaaa
     1381 caaggtatca gttcctaaaa agatctctcc ggcattaaat agcaaactct caattttaca
     1441 agactatatg acggagttac aaagtgaaaa agggagaatt tctttcgaaa aaattgttaa
     1501 tacattagca gactcatata tccagcatag actaggagta gcaaaagaag aacacataag
     1561 agaagaaata caagaagagt ttgaaaaatt accaaaataa ttttttttca tgcggtattc
     1621 aattaaagta taagttatac tagataaatg aatattaaag tataagttat acattaaata
     1681 tttaaagtat aacttaataa acaacgtgta aatttgcgat taaatcaaca ttataaaatt
     1741 attatttaaa gtataagtta tacattattt gtatttaaag tataacttat acttattttt
     1801 ttaatatata acttatacct taaatactga aagtgtttta ttcaccctta atacatggta
     1861 tagttcactt gttgaaaatc gtgaatatat acaagtttct atgaagaagg agaaatttaa
     1921 tgtctacaga aattcaatct caaaaaatga ttattaaaaa ttggggatat aaagcaacga
     1981 atgtttatat tgaaaaatat tataaatttc ctagtttttt aattcagaat tctaaatact
     2041 ctaaaatgaa agacagctca aaaatagcct atatgctttt taaaaatgaa tttcgtagag
     2101 ccttacatga aaaatggatc gacgatgatg gtctattata tttggaattt acacaagcag
     2161 acctaatgga caaattaaat tgctaccaag gcaaagtaaa aaccatttta aacgagttag
     2221 aaacatataa tttgatttca gtcgtaaaag gagaatttaa cccaaaaacg aaaaaaaatg
     2281 aaaaaaataa atactattta cttcaacctg aaataagtgc cgatgatctt tttattcaga
     2341 attctttcga tgacgattta agccaaacta ttgataaatc aacctcttct cggaatgcgg
     2401 aaatcgcacg tcgagaggaa actgctaaaa cccttgataa tactggaaat gcggaaatcg
     2461 cacgtcgaga aaaaacagct gaaacccttg ataacactgg aaatgcggaa atcgcacaag
     2521 attattatat taataaatct ttagacacta aaagacactt aaaagacact gaaacagacc
     2581 aattacaaaa tcaagttttg ctagataact tcgttgaaat catgaaagaa gacagcataa
     2641 acacatttgt accagaaaag gtattaagct tgataaaaac attttctaac acttacgaag
     2701 aagcccaaca aaccgtcacc acaatacaca acgcaaaaca taaagccgag gaacttgaga
     2761 agacggtagt tgtgtatgaa gaacttgaat cttacggaat tgatgcggat aaaggattat
     2821 atatgacgtt gctgaaagct tatcaaaaac aaaagactga gaaagtaaat aatttgcaga
     2881 atttgatttt tgtgtatgta aaaaactggt ttattgaaaa agctattgcg gcaaagcttg
     2941 caaacgaaca aagagaaaca tttaacgaat taccaacagt tagtacggaa aattggctag
     3001 agtagttgat aaaaagcgat cactataaaa atgatcaatt ttaaattaga actttttata
     3061 attttaattt tattacaaat gttacaaata aatagttatt attccggagt ttttagatta
     3121 aaagtttatg aaaacaatca caaacgtagg ttttaatgtc ataatcgtta gatattttag
     3181 ttatttttca ttcaaaaaaa tagggaacta gtgtttgcat atgtgctttt ttgagttata
     3241 ataattcatg aagagaggta attcacttat ttccccaagc tgaaaagcct gatattactt
     3301 cttttcaggc agtgctgcta atattcaatt acactttttg tatattttta gttgttttaa
     3361 atttaattgt ctgctatgct tgtgatgaat tgattttcgt tctgcacttt tggacgataa
     3421 atttggacaa ttgaaaatac aaaaaaaaga aaggcccctg taagactcgg gagactggta
     3481 atctccgtca gtgccctaca ggaaagcatt aagctcactc cttaatgcgt gcccttcagt
     3541 gttacggtat tacccgcaac ggatttagta taacagatat tcaaaagtga taccactttt
     3601 tttggctgtg ttaaggttaa aaatggctct ttgtcaaatg atgttggtaa agagaaatct
     3661 tagaataatt ggagatcaag tggatcagtt cctcttgatc tttttagttg aaaatcaatg
     3721 cgttgccatg acgaatcatg atgcgcaatt tgaaattata aaagctacga aagccatatg
     3781 catttcgttt taacactttg atatggttgt tcagacattc aagtgggcca tttgaataac
     3841 tttgttgtaa agcatttttg atttgtggca gaaatttctg gaacgttctc aaggtcgtct
     3901 gatagccttc gggaagcatg atattattgg taagtagttc ttcaaacgat acgtagtctc
     3961 gttcctttac agcgtaaaga aagtcttgat ataactgata gcctacacgc aaagcagggc
     4021 tccctttcag taagcgatcc acaatatcgg tctctgttaa atgagctttg aagccaggtc
     4081 gccaaaggcg tcgagtataa tcaagcttgc gttcatcttt ttgaagaagt ttccagtatc
     4141 tttttaattg cttacctaat tgatagtgtt tttgttcttt gctttttaat agttggttcg
     4201 tttctttgat tcgatgattg cgaaaggtac gaccaatatg ttggacgatg tgaaaccggt
     4261 caataatcag ctgtgctttt ggaaacagct ttttaacgag cgatacataa ggagcgtaca
     4321 tatcaatcac gatccattcg accgcttcac gaatttctcg tgaaaaatga ctaaaataac
     4381 gttttaaaaa aggcagttgt cggttctcga caatgtccaa taagcgctgt gtttgtccat
     4441 ccatcatgat gaaactcata gcacctgaaa caccccgaac tgatttgaat tcatcaaaac
     4501 aaagtacctt aggtaacggt gtccgaaaag gattcaacgg acgataaaat cgcttcataa
     4561 tacggtaaac agaagagacc gatagatttt tctgagcggc gatctctgtc attgaggtat
     4621 tttttttcag acgagtcacg acagaccagc ggactttctc actgatgaaa caatgttttt
     4681 tcgcaacaga agtatctgcg acaaaggtcc gctgacaagc tttgcatttg aagcgttgct
     4741 ttttcaattc gaggtaggta cggtattcag aaacatcgtt cattaacaac cggacggttg
     4801 ttgtacccca acgcacaata tctgaagcaa tctggtgttt acagtggatg cattcttggg
     4861 ctgtataaat caagtttcca cgataaatat gacagatttg ccctttgtat ttttcttttg
     4921 tgagacaatt ttcgttaaaa gtaactgata agtctagaat atctaatgtt tctttgataa
     4981 ggtgagtgta agacatcttg attcctcctt ttgggttggt tcgccaaatt aattctaaag
     5041 gatttcaagg tgtcttttct atatgttttg gaaaataaaa aaagatgctg gtgtcatcca
     5101 ccaacatcaa aaagtataga gccttaaaaa tacgtgatat tacgatgaat ctatgcctaa
     5161 gcataatgtt ataaaaatgt ccgtgtggct ctttgccgta tgatgaacgc tgaaattaga
     5221 gggaacgcat gtttggatgc gttccctctt ttttgtttgt catgaacgaa aatcaattct
     5281 ctatttttga aaaataacaa gaaaaacttg ttaaaaatat ttaaagtaag tgggtggatt
     5341 attttatgtc atatacagga attttgagtc tcgaagatat ttgtcactac ggtaaacggt
     5401 gtaccgctac agagaagatc acgaagaaac tatcaactgg ccaaaataaa accgttgtgc
     5461 agtgtaagaa atatataatc caaaaagaca aagtctcaga ggaaatgatt tattacgttg
     5521 ggaaacaaaa gcaaataatt ttaaaagatc ctatcccttt aaaagagcta tatccaacaa
     5581 tcaaacatgt ttatgaccaa aacggtgtat tgataggtcg aagaaaaatg gagtcttacg
     5641 ttgtaccgca aaagggatgg ggcgtttgat cagctgaatt gatcattctt ataacttgta
     5701 ttttatcgtt tttcgcttgc ttgaaaatat tgtcgagact tctaaaagaa cttagaatca
     5761 ctagaaaaat aaggagtaga cttgatctat caacaattcc cttcggggag tgatggggta
     5821 ggtttttacg attggtaacg taaaaaattg gtcaatcgag taaatgccct tgtttggata
     5881 gtggtgaaat gaatttgtgt aaataatatg cacagagtaa acaagaggga atttagaagt
     5941 tagacaagtt agaatagcgc ctagattaat catgagcagc tactaaggga tctaggcttt
     6001 gacgcaaact catggaataa ggagtaggtc ttctcgtaat ggggaggacg cacaagaaat
     6061 tgtgtcgtgt gctgcagtac atgtagatac ttgcgaggac gttgattatt ggatcaatcg
     6121 agcatttacc gatgttctac tagggtttct cgtttcggac gccataaacg agtcgatatt
     6181 ttttatgtat ttttaagtaa acgaaaaacg ataaaatatg aacgagtcct gaataaagtg
     6241 aaaaaattga tataaaacat agagaaaatg aaatttacgt aatggaggaa tgacaaatga
     6301 aaaattatga tccgaatata cgatggggca cacatactat taaggtttct ttccaacgtt
     6361 gggattacaa aggatttgtg acgtttagaa gaggcggaaa ttgtaaagga ttagatgttt
     6421 tagcattaga cgaggaagat ttatacgatc aaaaattgac tgataatcca attggattcg
     6481 gcttgctacc tgaagatgat gaaggtaatg aatggtttaa aatgacgctt atgaatgata
     6541 atggagacga attatctgtt gaagatactt ggtcatattt gagtgattat attgtcagcg
     6601 ttgaaatcat tgaatttgta gcggataaag aagaataaaa actggaggaa taaattttac
     6661 agataaaggc ttagaaggag tcacgacgat taataaaaag gtagtattac cttaggcatt
     6721 gagtaaggaa tttattta
//
