LOCUS       CP060168                1975 bp    DNA     circular BCT 19-AUG-2020
DEFINITION  Salmonella enterica subsp. enterica serovar Typhimurium strain
            D37712 plasmid pBT3, complete sequence.
ACCESSION   CP060168
VERSION     CP060168.1
DBLINK      BioProject: PRJNA656698
            BioSample: SAMN15795869
KEYWORDS    .
SOURCE      Salmonella enterica subsp. enterica serovar Typhimurium (Salmonella
            typhimurium)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhimurium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 1975)
  AUTHORS   Msefula,C.L., Benjamin,K., Canals,R., Predeus,A.V. and Hinton,J.C.
  TITLE     A novel sub-lineage of multi-drug resistant invasive non-typhoidal
            Salmonella Typhimurium ST313 has a distinct transcriptomic signature
            and fitness advantage
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1975)
  AUTHORS   Msefula,C.L., Benjamin,K., Canals,R., Predeus,A.V. and Hinton,J.C.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-AUG-2020) Institute of Infection, Veterinary &
            Ecological Sciences, University of Liverpool, Crown St, Liverpool L7
            3EA, United Kingdom
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date          :: 16-OCT-2018
            Assembly Method        :: Unicycler v. v0.4.7
            Assembly Name          :: D37712_v3
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 200.0x
            Sequencing Technology  :: PacBio Sequel; Illumina HiSeq
            ##Genome-Assembly-Data-END##
            Bacteria and source DNA available from Jay Hinton laboratory,
            University of Liverpool, Liverpool.
FEATURES             Location/Qualifiers
     source          1..1975
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhimurium"
                     /mol_type="genomic DNA"
                     /strain="D37712"
                     /serovar="Typhimurium"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90371"
                     /plasmid="pBT3"
                     /geo_loc_name="Malawi"
                     /lat_lon="15.46 S 35.01 E"
                     /collection_date="2006"
                     /collected_by="Chisomo L. Msefula"
ORIGIN
        1 ttactggctt tgaaagattc gcagcagaga gcgaaacacg acgagaaagc ggaaaggcgc
       61 agcgctcaat ccggcaaacc gtctcacggg ttaacccaag ctgcgttgca aactctgcct
      121 gcgtaagccc cagtgagagc cttacttctt taaattctct gttattcata gagttagaat
      181 cactccgtta atcaattaaa caatgtgatc tcagatcaca tcgacaaagt aacgagtcta
      241 cccgcacgct accagaagtt aggttttaac tggaaaactc cgtgtttccg ttgactctac
      301 ccccgtgtta cagggcgggg gtatcggtgc ggcggtgtac acaatgcaca tcctgtcctg
      361 cctttgatgt cgaaaccgga caagatgtgt ttttggagta ccgccattcg cggcaacatc
      421 caaaaacggc tcatcagggc gatggcttca ctgcgtgaac catcacctgt tagcagtgtt
      481 atttctccgg cgtgtcgtca atcactaaat cggaaccctg aaagggaacc cccgatttag
      541 cgtttgacga gttcaggccg cagagatgcg gatgaatatc cagaaaagaa gcctccagat
      601 tcgcactcag aagctctatg aggggatgaa ggtcatcatc aaggggatgg agtgaggcaa
      661 acgccgtaaa cgcctctacg gcgttctggt gacgtgtaat cagggtaagc atggtagaat
      721 tcgtgtcagt catggagacc tccgtaacag gttttcgtga tagcaggggg cgggaactcg
      781 taattccttc cccctgcgcc catcagatca taattccgct acacgggcaa gccgccacgg
      841 gaagagtgca ctcctcgtgg gaactcggtg cgctcccttc ccgtgcccgc ctgccagctc
      901 gtgccattct gacccgtccg gcacagatag ccagaaacca cgcgagagag tccgcaccgc
      961 tcgccgcaag acgtgattag cgagcaacgc gagtctgtca cgtcgaggaa gcggaatatc
     1021 acctgaacgg gcatagaaaa ccgtacgcac agtacccaca gaaaaacacg atgcaggata
     1081 gggcaaacgc cgcaaaatgc tagcatttta ctcgtttgcc cggtgaccta cagcagtttc
     1141 cagaagtgat gttttcgtgg ctggcatcgc gcacagagtt acaagataca gaagggaacc
     1201 tcccgcaagc cgcgccacaa gcggaatcat ttgacagata gttatgttca ggcataactt
     1261 agttatgttc aggcataact atttaaggaa ttttcatgcg aaaagtcaca caggttgacc
     1321 tcgaaaccgg agaggatttg ggcgggtttg tcgccgtgat ccgtcccaag caaaaatcat
     1381 cgttcgagag gcatttcact atgaatcagg cagcactcaa aatcatcgct acagaactga
     1441 accatgagca gacaaaagta ctcatgatgc ttctcgcaga cctggactac gaaaattaca
     1501 ttcaggtggc acaaatcgac attgcagaat cattgggaat gaaaaaacca aatgttagca
     1561 aagctgttaa aaacctgatt gagttcggaa taatccttga ggggccaaag ataggccgaa
     1621 gcaaaaccta ccgcctgaat cctcaattcg gctggaaagg cacggtaagc aaccacaaga
     1681 aagcgctcaa aaacggcctc agcgtcattc agggtggcaa ggtgtgatcc aagatcacat
     1741 cacttcaacg actccggcag gtaaggccta atctcagatc gaagggctga aagaaactca
     1801 gcgacatgct tgccggaaac cttattccgt ccataaaccg ggcgtgaaag ccggaaatta
     1861 aaaatcatcg tatcaagccg gattaacagg ctcatagcat caagtctgga agctatatcc
     1921 agcgcctcat tgtcatgtga tctcagatca ctttcactct catgaacctg cgtca
//
