LOCUS       CP056545                1530 bp    DNA     circular BCT 16-MAY-2022
DEFINITION  Klebsiella oxytoca strain RHBSTW-00432 plasmid pRHBSTW-00432_7,
            complete sequence.
ACCESSION   CP056545
VERSION     CP056545.1
DBLINK      BioProject: PRJNA605147
            BioSample: SAMN15148609
KEYWORDS    .
SOURCE      Klebsiella oxytoca
  ORGANISM  Klebsiella oxytoca
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 1530)
  AUTHORS   AbuOun,M., Jones,H., Stubberfield,E., Gilson,D., Shaw,L.P.,
            Hubbard,A.T.M., Chau,K.K., Sebra,R., Peto,T.E.A., Crook,D.W.,
            Read,D.S., Gweon,H.S., Walker,A.S., Stoesser,N., Smith,R.P.,
            Anjum,M.F. and On Behalf Of The Rehab,Consortium.
  TITLE     A genomic epidemiological study shows that prevalence of
            antimicrobial resistance in Enterobacterales is associated with the
            livestock host, as well as antimicrobial usage
  JOURNAL   Microb Genom 7 (10) (2021)
   PUBMED   34609275
REFERENCE   2  (bases 1 to 1530)
  AUTHORS   Shaw,L.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JUN-2020) Nuffield Department of Medicine, University
            of Oxford, John Radcliffe Hospital, Oxford OX3 9DU, United Kingdom
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. v0.4.7
            Assembly Name                     :: WTP4 T2-00432
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 88.0098307145216x
            Sequencing Technology :: Hybrid: Illumina and OXFORD_NANOPORE
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 06/19/2020 00:08:59
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
            Genes (total)                     :: 6,060
            CDSs (total)                      :: 5,942
            Genes (coding)                    :: 5,737
            CDSs (with protein)               :: 5,737
            Genes (RNA)                       :: 118
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 205
            CDSs (without protein)            :: 205
            Pseudo Genes (ambiguous residues) :: 0 of 205
            Pseudo Genes (frameshifted)       :: 84 of 205
            Pseudo Genes (incomplete)         :: 122 of 205
            Pseudo Genes (internal stop)      :: 32 of 205
            Pseudo Genes (multiple problems)  :: 30 of 205
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..1530
                     /organism="Klebsiella oxytoca"
                     /mol_type="genomic DNA"
                     /strain="RHBSTW-00432"
                     /isolation_source="Freshwater sample from downstream of
                     wastewater treatment plant"
                     /db_xref="taxon:571"
                     /plasmid="pRHBSTW-00432_7"
                     /geo_loc_name="United Kingdom"
                     /collection_date="2017"
     gene            complement(120..398)
                     /locus_tag="HV192_30295"
     CDS             complement(120..398)
                     /locus_tag="HV192_30295"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="QLU28109.1"
                     /translation="MFNKKPSFYNFLRANPNSYFVVKFHGMELYFFLNRGVWMHSLSAV
                     DGRTTFNCSDIPYGCSLFSALERLYGDSRYSFVTMPYADVVPLTRRD"
                     /name="hypothetical protein"
     gene            complement(391..1266)
                     /locus_tag="HV192_30300"
     CDS             complement(391..1266)
                     /locus_tag="HV192_30300"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="QLU28110.1"
                     /translation="MKANCLTAVKFTSFKPFSAQPKIPCLIYTNNSIILSPKTARKPLN
                     PADSMQLKTIISLRQNVEYFIEKYGYNNVGFLTLTFGDKIRDPKEAQRRFNSFRTNVLS
                     SRYLAYIRVLELHDNNCIHYHLVVAFTSDIRTGFDFDAYNFAKHSRLTAPIRRRLTTNA
                     TLRAEWDALRRLCKSHGFGRHEVIPLRKDASAVAFYLSKYLAKTLVSRPKQLKGVRLVE
                     YSRGAKICSTRFSYVSKRASTFRQAIPRFISDMASVHRHPATSDAMALHHGKNWLWKFR
                     AFIVENYCNV"
                     /name="hypothetical protein"
ORIGIN
        1 gcaactggtg tatatcgcat gctgcgcatc cgacatacac cagtagacac gaccagcgca
       61 acggctggcc gtgatgttta agacgggggg ttcctgcaac ggttacgagc gagggatttt
      121 caatcccgac gagtaagcgg aacaacatct gcatacggca ttgtaacaaa gctatagcga
      181 gagtctccat acaaacgttc aagagcagaa aaaagggagc aaccatatgg aatatcagaa
      241 caattaaagg ttgtacggcc atcgacagcc gaaagagagt gcatccaaac gccacgattg
      301 agaaagaaat acaattccat accgtgaaat ttaacaacga aataagaatt cggattagcc
      361 cttaaaaagt tgtaaaaact aggtttttta ttaaacattg caataattct ccacaataaa
      421 ggcccgaaat ttccaaagcc agtttttgcc atgatgaagg gccatagcat cagaagttgc
      481 gggatgacga tgaacggaag ccatatcaga gataaagcga gggatagcct ggcgaaaggt
      541 agaagcgcgc ttagaaacgt atgagaagcg cgtagagcag attttagcac cacggctata
      601 ctccaccagc ctaacgcctt taagttgctt aggacgcgat acaagcgttt tagcgaggta
      661 cttagaaaga tagaaagcaa cagcggaagc atctttacga agggggataa cctcatgacg
      721 accgaaacca tgtgacttac agagtcgcct taatgcgtcc cactcagcgc gaagcgtggc
      781 attcgtcgtt agacgacggc gaatgggcgc ggtgaggcgg gaatgtttgg cgaaattgta
      841 ggcatcaaaa tcaaatccgg ttcgaatgtc agaggtaaac gcaacgacaa gatggtagtg
      901 aatacagtta ttgtcatgaa gctcaagaac gcgaatgtac gcaagatagc gactggagag
      961 aacgttagta cggaatgaat taaaccgacg ttgagcctcc tttgggtcac gtatcttatc
     1021 gccaaaggta agagtcaaaa aaccaacgtt gttgtacccg tacttctcga taaaatactc
     1081 aacattttga cgcaaactga tgatagtttt tagctgcata gaatcagcag gattcaaggg
     1141 cttgcgagca gtttttgggg aaagaattat tgagttgttg gtataaataa gacaaggaat
     1201 tttcggctgc gccgaaaagg gcttgaagga ggtaaatttg acagcagtga ggcaatttgc
     1261 tttcataaaa aaagaccttt gttgggaaac gaggttagcg gaagtagaag gccgcgaaaa
     1321 tctttgaatc tgaaagagcc actcgcaagg tggctttttc tttgtctgta agctaacaaa
     1381 cgaaaacccg tctatcaagc tgttgaatcc ctatggcatt caacagccat tccaattttt
     1441 tccgtcgaag aattgtcaac cactaaatcg gaaccctaaa gggaaccccc gatttagcga
     1501 ttgacaaggc aggcattgtg caaatacgtg
//
