LOCUS       CP052720                2175 bp    DNA     circular BCT 04-MAY-2020
DEFINITION  Klebsiella pneumoniae strain B16KP0048 plasmid pB16KP0048-4,
            complete sequence.
ACCESSION   CP052720
VERSION     CP052720.1
DBLINK      BioProject: PRJNA625837
            BioSample: SAMN14609865
KEYWORDS    .
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 2175)
  AUTHORS   Yoon,E.-J., Gwon,B., Liu,C., Kim,D., Won,D., Park,S.G., Choi,J.R.
            and Jeong,S.H.
  TITLE     Built-in CTX-M extended-spectrum beta-lactamase gene in Klebsiella
            pneumoniae ensuring stable propagation of the multidrug-resistant
            pathogen in clinical settings
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2175)
  AUTHORS   Yoon,E.-J., Gwon,B., Liu,C., Kim,D., Won,D., Park,S.G., Choi,J.R.
            and Jeong,S.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-APR-2020) Research Institute of Bacterial Resistance,
            Yonsei University College of Medicine, 211, Eonjuro, Gangnam-Gu,
            Seoul 06273, Korea, Republic of
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: SPAdes v. 3.13.1
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 100x
            Sequencing Technology             :: Oxford Nanopore and Illumina
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 04/27/2020 20:42:27
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
            Genes (total)                     :: 5,510
            CDSs (total)                      :: 5,383
            Genes (coding)                    :: 5,277
            CDSs (with protein)               :: 5,277
            Genes (RNA)                       :: 127
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 88
            ncRNAs                            :: 14
            Pseudo Genes (total)              :: 106
            CDSs (without protein)            :: 106
            Pseudo Genes (ambiguous residues) :: 0 of 106
            Pseudo Genes (frameshifted)       :: 58 of 106
            Pseudo Genes (incomplete)         :: 42 of 106
            Pseudo Genes (internal stop)      :: 23 of 106
            Pseudo Genes (multiple problems)  :: 16 of 106
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..2175
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="B16KP0048"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="pB16KP0048-4"
                     /geo_loc_name="South Korea: Gyeonggi"
                     /lat_lon="37.66 N 126.77 E"
                     /collection_date="2016"
                     /collected_by="Kor-GLASS"
     gene            complement(join(2019..2175,1..269))
                     /locus_tag="HJW77_27495"
     CDS             complement(join(2019..2175,1..269))
                     /locus_tag="HJW77_27495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001676030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PH domain-containing protein"
                     /protein_id="QJN68691.1"
                     /translation="MGSYVDQSLTRNESVISRAQTSWIPTIIPVIIGILLLPFYGLGLL
                     IIIPVLLRVWSTELALTNQRVIAKVGLIRRNTVELRIDKVESLGIHQGILGRIFNYGSI
                     VIKGTGGTNTPIPNIKAPMQFRSIVNNHIEEMNSKQQ"
                     /name="PH domain-containing protein"
     gene            complement(669..830)
                     /locus_tag="HJW77_27500"
     CDS             complement(669..830)
                     /locus_tag="HJW77_27500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001326446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="QJN68689.1"
                     /translation="MHEPPVQSDYHARSGNYQLESNPERHDKSPVAVAIGNGFRGVSLE
                     VMRLLRLN"
                     /name="replication initiation protein"
     gene            complement(855..1179)
                     /locus_tag="HJW77_27505"
                     /pseudo=""
     CDS             complement(855..1179)
                     /locus_tag="HJW77_27505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005229779.1"
                     /note="frameshifted; incomplete; partial on complete
                     genome; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /name="hypothetical protein"
     gene            1517..1753
                     /locus_tag="HJW77_27510"
     CDS             1517..1753
                     /locus_tag="HJW77_27510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016230891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="QJN68690.1"
                     /translation="MTRLTNLTPAEKKFIDDAIAAAERAAGKKLNQPNRHIVLNRARAQ
                     IESQRYADRQRALREDERQQSDFAWSRPRAPRR"
                     /name="hypothetical protein"
     Typing          1181..1353
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="84.659"
                     /coverage="100.0"
                     /evalue="9.74e-41"
     Typing          complement(718..1234)
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="92.692"
                     /coverage="99.0"
                     /evalue="0.0"
ORIGIN
        1 atgccaaggc tttcaacttt atcaatacgg agttccaccg tattgcgtcg gatcaaaccc
       61 acttttgcga tgactctttg gttagttaat gcaagctccg ttgaccaaac tctaaggagc
      121 acagggatta ttataagtaa ccctaagccg taaaaaggca gcaacaagat tccgataatt
      181 actgggatga ttgttggaat ccaggaggtt tgagcgcgag atattacgga ttcatttctt
      241 gtcaatgatt ggtctacgta gcttcccata aggttatatc catttagaaa aaataggatt
      301 tttccctttt taaggcgaat cagcaataga aactttatgt ctccgtggta ggtatacaaa
      361 atttacggag agcgtagcga ccgtcgcaca gttcggttct ttcctttcgt gccgcaactg
      421 gcttgattct gtgatggtgg tggtggctgc tgctatgtct catatactct tggcgttgca
      481 atcctttatc ccatatctgt cgaatatcac agatgatctt cttgagatct tgtccgttgc
      541 gtcgtaatct cttgctctgg aaacgaaaaa accgccctgc aaggcggttt ttcgaaggtt
      601 ctcagagcta ccaactcttt gaaccgcggt aactggcttg gaggagcgca gtaaccaaat
      661 ctgtcctttc agtttagcct taacaggcgc ataacttcaa gactaactcc tctaaatccg
      721 ttaccaatgg ctaccgccac tggcgatttg tcgtgtcttt ccgggttgga ctcaagttga
      781 tagttaccgg aacgggcgtg gtagtcggac tgaacggggg gttcgtgcat acagtccagc
      841 ttggagcgaa ctgcctaccc ggaactgagt gtcaggcgtg gaatgagata aacgcggcca
      901 taacagcgga atgacaccgg tacaccgaaa ggcaggaaca ggagagcgca cgagggagct
      961 accaggggga aacgcctggg atctttatag tcctgtcggg tttcgccacc actgatttga
     1021 gcgtcagatt ctgtgatgct tgtcaggggg gcggagccta tggaaaaacg gcagcgccgc
     1081 atcctttttc tgccccgttt gtcatggcat atgcctttgc tcttctccgt gtgcaggtaa
     1141 cgcccgccgc agccgaacgg caggagcgtc cgcgactgag tgagcgagga ggcgtcatat
     1201 cctctgaact tccattttct gccttacgcc cgcagctgca ttttcctctg tcacatgaag
     1261 cactttcctg attaccgcac tcatgccaac ataataagcc agtatacact ccgctagcgc
     1321 tacgtgactg gttcagggct gcgccccgaa acccgctaaa tccactgacg cgcctgcggc
     1381 ttgtccaacg cctcacggca ccggattaaa atccgctccc gttcaccgtt tctgactgcc
     1441 tttcaccgtc gcttacgctt catcgttcct actgtgtctg gcagactgct gggactattc
     1501 tcatacggag ataaacatga cgagacttac aaacctgacc cccgctgaga aaaagtttat
     1561 cgacgacgct atagccgctg ccgaacgtgc ggccgggaag aagctcaatc agcctaaccg
     1621 gcacatcgtt ctgaacagag cgcgtgcgca gattgagtcg cagcgttacg ccgaccgcca
     1681 gcgtgcatta cgtgaggatg agcggcagca gtccgatttt gcctggtcac gtccgcgcgc
     1741 gccgcgccgc tgattgcgga ttttggcggt ttagtggtgc tgacgctgcg aaatcacctg
     1801 cgattcaccc gcgtgcataa cgattcatgc gctcaaaaat caccagagcg tttctgaacg
     1861 tttttcagga ggtcatacgt gttcttttgc gtattagggc ggagaaacgc cctgagagcc
     1921 tctgaggcgg tgcgggcaac gggtgttatg gtaaatccag ctgattggca ggtacaaaaa
     1981 aagccccgta gggctttttt tgtaatgcta cgaggaagct actgctgctt agaattcatt
     2041 tcctcgatat gattgttcac aatcgatctg aattgcattg gcgccttgat gtttggaatt
     2101 ggagtgttgg ttccgccagt gcctttaatc acgatagacc catagttaaa gattcgtccc
     2161 agtatccctt gatgt
//
