LOCUS       CP052711                2175 bp    DNA     circular BCT 04-MAY-2020
DEFINITION  Klebsiella pneumoniae strain B16KP0078 plasmid pB16KP0078-3,
            complete sequence.
ACCESSION   CP052711
VERSION     CP052711.1
DBLINK      BioProject: PRJNA625837
            BioSample: SAMN14609866
KEYWORDS    .
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 2175)
  AUTHORS   Yoon,E.-J., Gwon,B., Liu,C., Kim,D., Won,D., Park,S.G., Choi,J.R.
            and Jeong,S.H.
  TITLE     Built-in CTX-M extended-spectrum beta-lactamase gene in Klebsiella
            pneumoniae ensuring stable propagation of the multidrug-resistant
            pathogen in clinical settings
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2175)
  AUTHORS   Yoon,E.-J., Gwon,B., Liu,C., Kim,D., Won,D., Park,S.G., Choi,J.R.
            and Jeong,S.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-APR-2020) Research Institute of Bacterial Resistance,
            Yonsei University College of Medicine, 211, Eonjuro, Gangnam-Gu,
            Seoul 06273, Korea, Republic of
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: SPAdes v. 3.13.1
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 100x
            Sequencing Technology             :: Oxford Nanopore and Illumina
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 04/27/2020 20:00:54
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
            Genes (total)                     :: 5,564
            CDSs (total)                      :: 5,436
            Genes (coding)                    :: 5,320
            CDSs (with protein)               :: 5,320
            Genes (RNA)                       :: 128
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 88
            ncRNAs                            :: 15
            Pseudo Genes (total)              :: 116
            CDSs (without protein)            :: 116
            Pseudo Genes (ambiguous residues) :: 0 of 116
            Pseudo Genes (frameshifted)       :: 60 of 116
            Pseudo Genes (incomplete)         :: 50 of 116
            Pseudo Genes (internal stop)      :: 23 of 116
            Pseudo Genes (multiple problems)  :: 16 of 116
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..2175
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="B16KP0078"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="pB16KP0078-3"
                     /geo_loc_name="South Korea: Gyeonggi"
                     /lat_lon="37.66 N 126.77 E"
                     /collection_date="2016"
                     /collected_by="Kor-GLASS"
     gene            complement(253..414)
                     /locus_tag="HJW78_27760"
     CDS             complement(253..414)
                     /locus_tag="HJW78_27760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001326446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="QJN36144.1"
                     /translation="MHEPPVQSDYHARSGNYQLESNPERHDKSPVAVAIGNGFRGVSLE
                     VMRLLRLN"
                     /name="replication initiation protein"
     gene            complement(439..763)
                     /locus_tag="HJW78_27765"
                     /pseudo=""
     CDS             complement(439..763)
                     /locus_tag="HJW78_27765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005229779.1"
                     /note="frameshifted; incomplete; partial on complete
                     genome; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /name="hypothetical protein"
     gene            1101..1337
                     /locus_tag="HJW78_27770"
     CDS             1101..1337
                     /locus_tag="HJW78_27770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016230891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="QJN36145.1"
                     /translation="MTRLTNLTPAEKKFIDDAIAAAERAAGKKLNQPNRHIVLNRARAQ
                     IESQRYADRQRALREDERQQSDFAWSRPRAPRR"
                     /name="hypothetical protein"
     gene            complement(1603..2028)
                     /locus_tag="HJW78_27775"
     CDS             complement(1603..2028)
                     /locus_tag="HJW78_27775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001676030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PH domain-containing protein"
                     /protein_id="QJN36146.1"
                     /translation="MGSYVDQSLTRNESVISRAQTSWIPTIIPVIIGILLLPFYGLGLL
                     IIIPVLLRVWSTELALTNQRVIAKVGLIRRNTVELRIDKVESLGIHQGILGRIFNYGSI
                     VIKGTGGTNTPIPNIKAPMQFRSIVNNHIEEMNSKQQ"
                     /name="PH domain-containing protein"
     Typing          765..937
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="84.659"
                     /coverage="100.0"
                     /evalue="9.74e-41"
     Typing          complement(302..818)
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="92.692"
                     /coverage="99.0"
                     /evalue="0.0"
ORIGIN
        1 actggcttga ttctgtgatg gtggtggtgg ctgctgctat gtctcatata ctcttggcgt
       61 tgcaatcctt tatcccatat ctgtcgaata tcacagatga tcttcttgag atcttgtccg
      121 ttgcgtcgta atctcttgct ctggaaacga aaaaaccgcc ctgcaaggcg gtttttcgaa
      181 ggttctcaga gctaccaact ctttgaaccg cggtaactgg cttggaggag cgcagtaacc
      241 aaatctgtcc tttcagttta gccttaacag gcgcataact tcaagactaa ctcctctaaa
      301 tccgttacca atggctaccg ccactggcga tttgtcgtgt ctttccgggt tggactcaag
      361 ttgatagtta ccggaacggg cgtggtagtc ggactgaacg gggggttcgt gcatacagtc
      421 cagcttggag cgaactgcct acccggaact gagtgtcagg cgtggaatga gataaacgcg
      481 gccataacag cggaatgaca ccggtacacc gaaaggcagg aacaggagag cgcacgaggg
      541 agctaccagg gggaaacgcc tgggatcttt atagtcctgt cgggtttcgc caccactgat
      601 ttgagcgtca gattctgtga tgcttgtcag gggggcggag cctatggaaa aacggcagcg
      661 ccgcatcctt tttctgcccc gtttgtcatg gcatatgcct ttgctcttct ccgtgtgcag
      721 gtaacgcccg ccgcagccga acggcaggag cgtccgcgac tgagtgagcg aggaggcgtc
      781 atatcctctg aacttccatt ttctgcctta cgcccgcagc tgcattttcc tctgtcacat
      841 gaagcacttt cctgattacc gcactcatgc caacataata agccagtata cactccgcta
      901 gcgctacgtg actggttcag ggctgcgccc cgaaacccgc taaatccact gacgcgcctg
      961 cggcttgtcc aacgcctcac ggcaccggat taaaatccgc tcccgttcac cgtttctgac
     1021 tgcctttcac cgtcgcttac gcttcatcgt tcctactgtg tctggcagac tgctgggact
     1081 attctcatac ggagataaac atgacgagac ttacaaacct gacccccgct gagaaaaagt
     1141 ttatcgacga cgctatagcc gctgccgaac gtgcggccgg gaagaagctc aatcagccta
     1201 accggcacat cgttctgaac agagcgcgtg cgcagattga gtcgcagcgt tacgccgacc
     1261 gccagcgtgc attacgtgag gatgagcggc agcagtccga ttttgcctgg tcacgtccgc
     1321 gcgcgccgcg ccgctgattg cggattttgg cggtttagtg gtgctgacgc tgcgaaatca
     1381 cctgcgattc acccgcgtgc ataacgattc atgcgctcaa aaatcaccag agcgtttctg
     1441 aacgtttttc aggaggtcat acgtgttctt ttgcgtatta gggcggagaa acgccctgag
     1501 agcctctgag gcggtgcggg caacgggtgt tatggtaaat ccagctgatt ggcaggtaca
     1561 aaaaaagccc cgtagggctt tttttgtaat gctacgagga agctactgct gcttagaatt
     1621 catttcctcg atatgattgt tcacaatcga tctgaattgc attggcgcct tgatgtttgg
     1681 aattggagtg ttggttccgc cagtgccttt aatcacgata gacccatagt taaagattcg
     1741 tcccagtatc ccttgatgta tgccaaggct ttcaacttta tcaatacgga gttccaccgt
     1801 attgcgtcgg atcaaaccca cttttgcgat gactctttgg ttagttaatg caagctccgt
     1861 tgaccaaact ctaaggagca cagggattat tataagtaac cctaagccgt aaaaaggcag
     1921 caacaagatt ccgataatta ctgggatgat tgttggaatc caggaggttt gagcgcgaga
     1981 tattacggat tcatttcttg tcaatgattg gtctacgtag cttcccataa ggttatatcc
     2041 atttagaaaa aataggattt ttcccttttt aaggcgaatc agcaatagaa actttatgtc
     2101 tccgtggtag gtatacaaaa tttacggaga gcgtagcgac cgtcgcacag ttcggttctt
     2161 tcctttcgtg ccgca
//
