LOCUS       CP052556                2117 bp    DNA     circular BCT 04-MAY-2020
DEFINITION  Klebsiella pneumoniae strain A17KP0038 plasmid pA17KP0038-5,
            complete sequence.
ACCESSION   CP052556
VERSION     CP052556.1
DBLINK      BioProject: PRJNA625837
            BioSample: SAMN14609864
KEYWORDS    .
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 2117)
  AUTHORS   Yoon,E.-J., Gwon,B., Liu,C., Kim,D., Won,D., Park,S.G., Choi,J.R.
            and Jeong,S.H.
  TITLE     Built-in CTX-M extended-spectrum beta-lactamase gene in Klebsiella
            pneumoniae ensuring stable propagation of the multidrug-resistant
            pathogen in clinical settings
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2117)
  AUTHORS   Yoon,E.-J., Gwon,B., Liu,C., Kim,D., Won,D., Park,S.G., Choi,J.R.
            and Jeong,S.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-APR-2020) Research Institute of Bacterial Resistance,
            Yonsei University College of Medicine, 211, Eonjuro, Gangnam-Gu,
            Seoul 06273, Korea, Republic of
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: SPAdes v. 3.13.1
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 100x
            Sequencing Technology             :: Oxford Nanopore and Illumina
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 04/27/2020 22:13:06
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
            Genes (total)                     :: 5,686
            CDSs (total)                      :: 5,564
            Genes (coding)                    :: 5,431
            CDSs (with protein)               :: 5,431
            Genes (RNA)                       :: 122
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 85
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 133
            CDSs (without protein)            :: 133
            Pseudo Genes (ambiguous residues) :: 0 of 133
            Pseudo Genes (frameshifted)       :: 69 of 133
            Pseudo Genes (incomplete)         :: 67 of 133
            Pseudo Genes (internal stop)      :: 16 of 133
            Pseudo Genes (multiple problems)  :: 17 of 133
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..2117
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="A17KP0038"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="pA17KP0038-5"
                     /geo_loc_name="South Korea: Seoul"
                     /lat_lon="37.57 N 126.98 E"
                     /collection_date="2017"
                     /collected_by="Kor-GLASS"
     gene            1194..1517
                     /locus_tag="HJW76_28430"
     CDS             1194..1517
                     /locus_tag="HJW76_28430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000716773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="QJM24406.1"
                     /translation="MKKLVAIGLGVLILSGCATQKQMTPMGGSKADGTVKMGYTFGMFE
                     KPVVDLNSAKDLAGQKCKTWGYTGAEAFGGQTSTCAQVGAYGCEMTNVSIEYQCTGGKA
                     SEN"
                     /name="hypothetical protein"
     Typing          complement(343..558)
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="91.284"
                     /coverage="100.0"
                     /evalue="7.22e-78"
ORIGIN
        1 ttatttttca acctcaaaat ggtcatacac ctaacgcagc cgcgattttc atcgcaactg
       61 catgaattaa aagaaaaaaa agtaatgttt cgttttcacg agtaataccc aggtattaaa
      121 aacccactgt aattacatga aaataaagaa ataaaaggta ataccggcgt attaccacgt
      181 acgcgggcaa gcgaaaaagc tataacgctt cccggccgac aggcggccca gaatccacag
      241 gggcatgcag gatctcttca gtaaccttcg ccattaaatc aaaaaggtca tattcgccgg
      301 gaagctgcgt atcagtcgaa ccccgttgtt catcatattc agatggcatg gggtgatatc
      361 cagtagcaga gaggttgtta gcgggtttcg gggcgcagcc ctgaaccagt cacgtagcgc
      421 tagcggagtg tatactggct taatatggta aagcgaagtg ggaattcagg gaagtgcttc
      481 atgtggcagg ggaaaaatgt agctgcgggg cgtaagtgca acatgcaggt aaggatgaaa
      541 tgtcgcctcc tcgctcactt ggtcgctgcg ctcctgccgt gagactgcgg cgggcgttac
      601 ataagttctg aagggatgtt tttgattctc gggcgctaaa tgtacaaaag ccccgtgaca
      661 taatcacagg gcttcggtac tctaattcgt gcagatacct gctggattag acgtcgcaat
      721 caaatcttag cagggctggc tagccatgtc actaccagct taataccatt caacgacatt
      781 aaaatcatat ctgcacctta gacgctcagg tctacgcccc ggactccggc aggataaaca
      841 ggcaaattgg tgggaacgta acttaaccgc gaaagagtta ggctctaccc cgtctcgcag
      901 tacgataact tgcacctgat aaaatgagcg aaaaaggcag cagtacgcgg tgatgtgaga
      961 gacgtcggac acaacaccca cacaatcaag ccagttgcgc ggcaagaaaa acaaaacaag
     1021 agctagacga aggtcgctcc gctccccgta tttttatata cccaccacgg gggcattagg
     1081 ctttctttga tttttttatg ggatacctca aataatcaga ggattacaga gggtgttgcc
     1141 ttgtgtaaac ttcccgttaa gataattccg aacaatcatc cgggaaataa aaaatgaaaa
     1201 aactagtagc gatcggttta ggcgttttaa ttctttcagg ctgcgcaacg caaaaacaaa
     1261 tgaccccgat gggggggagt aaagctgatg gtacagtgaa aatgggttac acctttggga
     1321 tgtttgaaaa acccgttgtt gatctgaact cagctaaaga tctggctgga caaaaatgta
     1381 aaacatgggg atacactggg gctgaggcat ttggcggcca aacatccacc tgcgcacagg
     1441 tcggggctta tggttgtgag atgaccaacg tttcaatcga gtaccaatgc accggtggga
     1501 aagcttcaga aaactaagtt caacatttac cataacatcc cttgcgtgca ccgcctgaga
     1561 ggctctgagg gcgtttctga cgggaaaccg gtaaaacagg caacaaacca cccgaaaacc
     1621 cgccagaaac gcgcaggctc tgtttttacg gcatgcatga gtatgcgcgc aagtgcatag
     1681 cgcggaaatt cacaccattc agccagggga agtcctgttt ccggcgttct tcccatccga
     1741 aaacggtgaa cggggacgca atttattgcg tggccgtgaa gcgttgccgg cgcagccgga
     1801 aaacccgctg tcagcacgtt caggaagggg gtgatgtaca aatggcacag aggatgaaag
     1861 tgacgtatga gctgaaggaa tgatgtaaaa gtgatgtata aatgatgtaa aagtgatgca
     1921 aaagtgttgt aaaagtgatg tacaggccga aggagtgttg taaaagtgtt gtaaaagtga
     1981 tgtatgaact gaaggagcga tgtaattctg tagtcaggaa gaataacccg ttcatgcagg
     2041 catgaacgat acagtgagga acgctttttt ttgtcacgat ctccccttaa cctgcgtaaa
     2101 tcacccgcca tggttga
//
