LOCUS       CP052531                3742 bp    DNA     circular BCT 04-MAY-2020
DEFINITION  Klebsiella pneumoniae strain B16KP0177 plasmid pB16KP0177-7,
            complete sequence.
ACCESSION   CP052531
VERSION     CP052531.1
DBLINK      BioProject: PRJNA625837
            BioSample: SAMN14609871
KEYWORDS    .
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 3742)
  AUTHORS   Yoon,E.-J., Gwon,B., Liu,C., Kim,D., Won,D., Park,S.G., Choi,J.R.
            and Jeong,S.H.
  TITLE     Built-in CTX-M extended-spectrum beta-lactamase gene in Klebsiella
            pneumoniae ensuring stable propagation of the multidrug-resistant
            pathogen in clinical settings
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3742)
  AUTHORS   Yoon,E.-J., Gwon,B., Liu,C., Kim,D., Won,D., Park,S.G., Choi,J.R.
            and Jeong,S.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-APR-2020) Research Institute of Bacterial Resistance,
            Yonsei University College of Medicine, 211, Eonjuro, Gangnam-Gu,
            Seoul 06273, Korea, Republic of
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: SPAdes v. 3.13.1
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 100x
            Sequencing Technology             :: Oxford Nanopore and Illumina
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 04/27/2020 22:16:39
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
            Genes (total)                     :: 5,837
            CDSs (total)                      :: 5,715
            Genes (coding)                    :: 5,604
            CDSs (with protein)               :: 5,604
            Genes (RNA)                       :: 122
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 10
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 51 of 111
            Pseudo Genes (incomplete)         :: 61 of 111
            Pseudo Genes (internal stop)      :: 18 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..3742
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="B16KP0177"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="pB16KP0177-7"
                     /geo_loc_name="South Korea: Gyeonggi"
                     /lat_lon="37.66 N 126.77 E"
                     /collection_date="2016"
                     /collected_by="Kor-GLASS"
     gene            complement(join(3529..3742,1..20))
                     /locus_tag="HJW83_29140"
     CDS             complement(join(3529..3742,1..20))
                     /locus_tag="HJW83_29140"
                     /inference="COORDINATES: protein motif:HMM:NF016769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mobilization protein"
                     /protein_id="QJO48820.1"
                     /translation="MTELEMHLLNALKRMEQQFSEQLKASEKAQAALQSMFERTAEDNA
                     TLLKQVSFLDNRVNVLSEQLKQFGSLYRQNRR"
                     /name="mobilization protein"
     gene            complement(1263..1553)
                     /gene="mobC"
                     /locus_tag="HJW83_29145"
                     /pseudo=""
     CDS             complement(1263..1553)
                     /gene="mobC"
                     /locus_tag="HJW83_29145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016239790.1"
                     /note="incomplete; partial on complete genome; missing
                     N-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="plasmid mobilization relaxosome protein MobC"
                     /name="mobC"
     gene            2143..2574
                     /locus_tag="HJW83_29150"
     CDS             2143..2574
                     /locus_tag="HJW83_29150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001233485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="QJO48818.1"
                     /translation="MRRVTQVDLETGEDLGGFVAVVRPKQKSSFQRHFTMNQAALITIA
                     NELNHDQMRVLMALLADLDYENYIQVAQIDIADALRMQKTNVSRAVKNLIEFGIILEGP
                     KIGRSKTYRLNPQFGWKGTVSNHKKALTNGLSVIQGGRS"
                     /name="hypothetical protein"
     gene            2599..3414
                     /locus_tag="HJW83_29155"
     CDS             2599..3414
                     /locus_tag="HJW83_29155"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="QJO48819.1"
                     /translation="MKKKHLLLLTLIASFLAGCSTQQKPHSQAKVESAPALMEKRVAIS
                     SEGDFSGKPLTGAQFNRIIAKKIDEGSWKGYVVHTITAAPWNNTWSSKGLSIPTNITYA
                     GTYQNRNFYENSGNDKGITSRDMAGWYGFHVNMAETTKHSNYTGVNAFGVKANVEVLNT
                     RGASIVFGSTQINEGSSAPVWPDIDVIGAVPKDINLKDLKIEYLARITGIHRSFIEGNS
                     PTLSDPSDTNHQTQIFTGDLLAARLINAKTGTVYPVKLEWVFRTRGAFP"
                     /name="hypothetical protein"
     Typing          complement(2..1266)
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="95.735"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 tgcatttcca gttccgtcat ggtttacctc acgatccgca gggcttcctg cttcccgact
       61 gtccagcctc tgtcgtccac tttcgcccct ttgggcaata cgacaaaagt cccgctcttg
      121 tcctgaacga tgttcagacc cgctgttttg ctctccagcg ccgcaagcgt ggctttctgg
      181 ccgttgatct gctgccagtt ggccatgatc tggctttcct gaaacgtact caggccccag
      241 ccgctcagaa agataacggc caagatcgta accgcgctca gggccgggaa tatcacccgg
      301 tttttcacga cggtcagcaa catgctctgc cggctctggc gcatatcctc tgtcgtgtcg
      361 tgcagctgcc ggcgcatatc ttccagcatg gtattcagct cttgctgaaa tatgccgttc
      421 aactcgcttc gcaaactgct cagctgctgc ttcgtcaggc tttgaatagt ctcgctctct
      481 gcgagatgct gctgcttcaa tcgctcctgc agcgtcaaac tcacgctcat aaagtccccc
      541 tttcatgcgc caccgctggc cgctctgcgg atctgacacg gtgatgtaat ttttaccttc
      601 gcgcgttacc tgcattccta gttctgaaac ctgctcgata acgtcgctac gactgcgtat
      661 aagcccctgc gcggccctct gagacaaaac cgcgtctatg agtagcctga cgtcttcctg
      721 cggcttctcg ccccttctga gggcttctgc ggcgattttc agttcatggt caggctgagc
      781 gatctcacgt gcgcgccgtg ggtcatccgg gtcagccagg ccatacctgg cgttgatttc
      841 actgcgcagg tcatcgaaag cctgttttgc ggcatctccg ggcgggcgga tgttcaggct
      901 tttcccggta ccaagctcaa cgcggggcgt cacaaaatgc agctcgtgat gcccggcatg
      961 ggtatgtctg acccagagga tgttgtactg atcggcttca agcccggcga acgcgacttg
     1021 ttcaaagcga tccatgaact cctgctccat ttccgccgtg accttctcct ccggggcgaa
     1081 agacagcacg ccggaagtgt atttgtgccg gaaatcgagc gagtcgatga ggtagcgggt
     1141 agcctccggg aatcccctca gtacttccgg cggtgaatct tcccgaccgg gccgcgtttt
     1201 atcggtgaca tagccgaccg ggccgccacc gccgccagtg ccgtgcctgc tgaaacccac
     1261 aatcatcgcg acagctcccg aatatggcgt tcgatatcca tcaggtgagc gacgacctca
     1321 accgatgaag ccgccgattt atgcgtatta acccagcgag cgatcatgtt caggttcgca
     1381 ttgatgcggt taagcatcgc aatccgctcc cgatcgacgt ctttgttgcg tacgctgacc
     1441 ctgccgaggt gatcgcgaac cagctcggac atggtgcagc ccgcatcttc ggccagctgt
     1501 ttcagcgcct caaattccgc atcagaaaac ctgacccgca gcatattatc gcgcttttcc
     1561 attttgtctc catcgtcaca tactgcacct taaacaaggc tacccgatgt tgctacattt
     1621 cgctacgctc aatgtcgcac atcgggcctt gcaatgggcg gcttcgcctc cccttgaccc
     1681 ctcccttgca gcggtcgctt tgctccctcg cccagggcaa cggcgtctat caggtggatg
     1741 gcctcacttc gtgaaaccat ccacccctgc aaagcatgtt tttatgtgcc gtcatcaatc
     1801 agtaaatcgg aaccccaaag gggcccccac gatttaccaa ttgacgattt aaccaaggga
     1861 aaagccagcc tgaaaaccag taccgctcgc cgcaagttct ggctgaggcg taccgcagcg
     1921 cagcgaggaa cgaacagccg gaacgaggaa gcggaatatc gcctgaacgg gcatagaaat
     1981 gcgttcactc gctatgacat acactgcaat cagcacagtg ggagtaacaa gatacagaag
     2041 ggggtatccc gcaagccgcg ccagcagtgg attttttttg acaatagtta tctctcaaga
     2101 taacttggtt atctctcaag ataactatca ggaagaaagg cgatgcggag agtcacacaa
     2161 gtagatctcg aaactggaga ggatttaggc ggttttgtag cagtagtccg acctaaacag
     2221 aagtcatcat ttcagaggca tttcactatg aatcaagcag cactaatcac tattgctaat
     2281 gagctaaatc atgaccaaat gcgtgtatta atggctcttc tcgctgacct tgattatgag
     2341 aattacatac aggtagctca gatagatatt gcagacgctt tgcgaatgca gaaaaccaat
     2401 gtaagccgag cagttaagaa ccttatcgag tttggaatta tcttggaagg gccaaaaatt
     2461 ggccgcagca aaacttatcg tttgaatccc cagtttggct ggaaaggtac tgtcagtaac
     2521 cataaaaaag ctctaactaa cgggttaagt gtcattcaag gcgggcgttc ttaaacttgc
     2581 gttaaaggaa taaacgtagt gaaaaaaaaa catttgcttc tgcttacgct gatcgcctct
     2641 tttctagcgg gctgctctac acaacaaaaa ccccatagtc aggcaaaggt tgagagtgct
     2701 cctgccttga tggaaaaacg tgtagctatc agctcagaag gtgatttcag tggtaaaccg
     2761 cttactggtg cgcagtttaa tcgcatcatt gccaaaaaaa tcgacgaagg tagctggaag
     2821 ggttatgtag ttcataccat cacggccgca ccgtggaata acacatggtc ttccaaaggc
     2881 ttatctattc ctaccaatat tacttacgct ggtacatatc agaaccggaa cttctatgaa
     2941 aacagcggaa atgacaaggg gatcacctct cgtgatatgg ctggttggta tggattccac
     3001 gtcaatatgg ctgaaactac gaagcatagt aattacacag gcgtaaatgc ttttggagtt
     3061 aaagctaatg ttgaagttct aaatactcgc ggcgcgtcta tcgtctttgg cagcacccaa
     3121 attaacgaag gaagctctgc tcctgtatgg cctgatattg acgttatcgg tgcggtgcct
     3181 aaggacatca atcttaaaga tctcaaaatt gagtacctag cacggattac aggaatacac
     3241 cgctcgttta ttgaaggtaa cagccccacg ctttctgatc cgtccgatac aaatcaccaa
     3301 acacagattt tcacaggcga tctcttagca gcacgtttga ttaacgcaaa aacaggaact
     3361 gtttacccag ttaaacttga atgggttttc cgtacccgcg gcgcattccc ataaaaaata
     3421 acagcttttc tcacatgctt ggaccgtagt atctgttcgc cttaggcgcc ggaggctccg
     3481 gttcacgctg tttctgctgc aacgcttctt gatactccag ctgctttctc agcgcctgtt
     3541 ctgcctgtaa aggctcccga actgcttcag ctgctccgat aacacgttca cccgattgtc
     3601 taagaagctg acttgcttca acagcgtggc gttgtcttcc gcagtacgct cgaacatgct
     3661 ctgtaaggcg gcctgcgcct tctcggaagc tttcagctgc tcgctgaatt gctgctccat
     3721 acgcttcaat gcgttcaata aa
//
