LOCUS       CP052502                2496 bp    DNA     circular BCT 04-MAY-2020
DEFINITION  Klebsiella pneumoniae strain B17KP0021 plasmid pB17KP0021-3,
            complete sequence.
ACCESSION   CP052502
VERSION     CP052502.1
DBLINK      BioProject: PRJNA625837
            BioSample: SAMN14609877
KEYWORDS    .
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 2496)
  AUTHORS   Yoon,E.-J., Gwon,B., Liu,C., Kim,D., Won,D., Park,S.G., Choi,J.R.
            and Jeong,S.H.
  TITLE     Built-in CTX-M extended-spectrum beta-lactamase gene in Klebsiella
            pneumoniae ensuring stable propagation of the multidrug-resistant
            pathogen in clinical settings
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2496)
  AUTHORS   Yoon,E.-J., Gwon,B., Liu,C., Kim,D., Won,D., Park,S.G., Choi,J.R.
            and Jeong,S.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-APR-2020) Research Institute of Bacterial Resistance,
            Yonsei University College of Medicine, 211, Eonjuro, Gangnam-Gu,
            Seoul 06273, Korea, Republic of
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: SPAdes v. 3.13.1
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 100x
            Sequencing Technology             :: Oxford Nanopore and Illumina
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 04/27/2020 20:43:28
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
            Genes (total)                     :: 5,668
            CDSs (total)                      :: 5,545
            Genes (coding)                    :: 5,431
            CDSs (with protein)               :: 5,431
            Genes (RNA)                       :: 123
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 85
            ncRNAs                            :: 13
            Pseudo Genes (total)              :: 114
            CDSs (without protein)            :: 114
            Pseudo Genes (ambiguous residues) :: 0 of 114
            Pseudo Genes (frameshifted)       :: 55 of 114
            Pseudo Genes (incomplete)         :: 56 of 114
            Pseudo Genes (internal stop)      :: 17 of 114
            Pseudo Genes (multiple problems)  :: 12 of 114
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..2496
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="B17KP0021"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="pB17KP0021-3"
                     /geo_loc_name="South Korea: Gyeonggi"
                     /lat_lon="37.66 N 126.77 E"
                     /collection_date="2017"
                     /collected_by="Kor-GLASS"
     gene            453..680
                     /locus_tag="HJW89_28330"
     CDS             453..680
                     /locus_tag="HJW89_28330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010615788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YgdI/YgdR family lipoprotein"
                     /protein_id="QJL86179.1"
                     /translation="MKKIFVSVFAAAVALSALTGCTRTSYAIHTNDGRTIVSDGKPKES
                     DSGLLGYTDANGVKQQINKTDVKEVSEIPH"
                     /name="YgdI/YgdR family lipoprotein"
     gene            1046..1231
                     /locus_tag="HJW89_28335"
     CDS             1046..1231
                     /locus_tag="HJW89_28335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012814655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="QJL86180.1"
                     /translation="MTRQESAALNMAKFIRSQTLLLLERLEQMDLDEAAGCCEHLHDQA
                     EALYAMLNAQIGEKDA"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            complement(1529..1720)
                     /locus_tag="HJW89_28340"
     CDS             complement(1529..1720)
                     /locus_tag="HJW89_28340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001046776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="QJL86181.1"
                     /translation="MTFNDDERHLLVSVVSGWLRRAEGDAGAMMLDAYRQILSETEPAA
                     RAVMLEFLESVRIHYVSS"
                     /name="hypothetical protein"
     Typing          complement(1279..1366)
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="94.382"
                     /coverage="100.0"
                     /evalue="1.5000000000000001e-30"
     Typing          complement(1855..2027)
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="90.286"
                     /coverage="100.0"
                     /evalue="2.0600000000000002e-57"
     Typing          1952..2496
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="88.545"
                     /coverage="90.0"
                     /evalue="0.0"
ORIGIN
        1 acaggatgtg cgagagatgt atcaagagtt cttgaagtgg cggccttagt gaggctacac
       61 tgaaaggaca aatttggtga catgtctcgc acaagactgt taccacggtt aggggatctg
      121 ccaggattac ctaaccttcg aaaaaccacc tgccagggtg gttttttcgt ttacagggca
      181 agagattacg cgcgaaaaaa aaggatctca agaagatcct ttataaatta gacatccaac
      241 ctcacaaaga ggaatactta aatcatcttg gtatatgtat ctgctggatt acatctcata
      301 taagcctcct ccccgcttga caccacactt tgaccatagc acctcgcgcc taactcgata
      361 tacagcccac catcaagcct cttttcacat aaaaaataac ctatagttag atggttagtg
      421 accaaaactg atatggataa aaggagctgg ctttgaaaaa gatttttgtt tcagtgttcg
      481 cagcggcagt tgcgctttca gccctcaccg gctgcacgcg cacaagctat gccatacaca
      541 ccaatgacgg tcgcactatt gtcagcgacg gcaaacctaa agaatcagac tcaggcctgc
      601 ttggctatac agacgcgaat ggtgtcaaac agcagatcaa taaaaccgac gttaaagaag
      661 tctccgaaat tccgcactga gcatattctc cgaaaaaggc cgctaatgtg gcctttttct
      721 ttacctgtgg ttctccgcca aaatcccagc aaattgcatc accaaagcta aaagctttca
      781 gggttgtcta aaaagcacaa gacataagag gaagtgcggt attttataat caagccccca
      841 agaatttacc ataacatccg ttgcccgcac cgcctcagac gcgctcagcg cgtttctgac
      901 ggaaccatga caaaaaccac aacaaaccac cccggaaccc gtcagaaacg cgcctgttaa
      961 attttaacgg catgcatgac tatgcaccag aatgacggca tgctcttttc acgcaaaaat
     1021 catcaccaga cggggaaaat caccagtgac cagacaggaa tccgccgccc tcaacatggc
     1081 caaatttatc cgctcacaga cactcctcct cctcgaacgg ctcgaacaga tggatctgga
     1141 tgaggcagcc ggctgctgtg agcatctgca cgatcaggct gaagcgcttt acgccatgct
     1201 gaacgcacag ataggcgaga aagatgcgtg aaaatcggtg aacgggtgcg caattcagtg
     1261 cgcggccgtg aggcgatggc ggggtgtcgg ggcgcagccc tgaacggggt atttgtgatg
     1321 ccgccgcgtg cgcggtatta caaatgcaca tcctgtccgg gagcggacac cgggaaacag
     1381 caaaaaaaac cgggcgacac gcccggaact caatcaagtt agattactct caatcttcca
     1441 taacagcatc atggaacgac gaccaccgtc cgtgacggcc gcctggattg agtatggaca
     1501 aaaattcagg aaatgcttca ggaaatgctc aggacgaaac gtaatgaatg cgaactgatt
     1561 caagaaattc gagcatgacc gcccttgcgg ccggttcggt ttcagacaaa atctgccggt
     1621 atgcatccag catcatggct ccggcatccc cttcggcacg ccggagccag cccgaaacaa
     1681 cggacacaag caggtgtcgc tcatcatcat taaaagtcat cagggctccg gaggaaaaac
     1741 caaacatggc ttacctcctg ttaacggcaa cgcagaagaa aggtttacag ggtagcgggc
     1801 aggaatgaaa aaaatcgcag tcagaccaga acggctgctt aaccggtaca ggcgggttcc
     1861 gggcgcagcg ccggaccagt cacgcagcgc tagcggagtg tatactggct taatatgttg
     1921 gcacggatgc ggatgtcagt taagtgcttc atgtggcagg agaaaaaggc ggcatcggtg
     1981 cgtcagcaga atatgtgata caggagatat tccgcttcct cgctcactga ctcgctgcgc
     2041 tcggtcgttc ggctgcggcg agcggtacgg gcttacgtac agagcagaaa tttcctggag
     2101 aatgccagga aggttcttag cgaaaaaggc ataaggccac ggcaaagccg tttttccata
     2161 ggctccgccc ccctgacaag catcacgaaa tctgacgctc aaatcagtgg tggcgaaacc
     2221 cgatgcggct taaagatacc aggcgtttcc ccctggtggc tccctcgtgc tcccccgcat
     2281 tcctgccttt cggtttaccg gtgtcactcc gctgttatgg ccgcggtttc tcattccacg
     2341 cctgacactc agttccggga aggcagttcg ctccaggatg gactgtatgc acgaaccccc
     2401 cgttcagtcc gaccgctgcg ccttatccgg taactatcaa cttgagtcca acccggaaag
     2461 acacgactaa tcgccattgg caacggccat tggtaa
//
