LOCUS       CP052493                2058 bp    DNA     circular BCT 04-MAY-2020
DEFINITION  Klebsiella pneumoniae strain B17KP0069 plasmid pB17KP0069-3,
            complete sequence.
ACCESSION   CP052493
VERSION     CP052493.1
DBLINK      BioProject: PRJNA625837
            BioSample: SAMN14609879
KEYWORDS    .
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 2058)
  AUTHORS   Yoon,E.-J., Gwon,B., Liu,C., Kim,D., Won,D., Park,S.G., Choi,J.R.
            and Jeong,S.H.
  TITLE     Built-in CTX-M extended-spectrum beta-lactamase gene in Klebsiella
            pneumoniae ensuring stable propagation of the multidrug-resistant
            pathogen in clinical settings
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2058)
  AUTHORS   Yoon,E.-J., Gwon,B., Liu,C., Kim,D., Won,D., Park,S.G., Choi,J.R.
            and Jeong,S.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-APR-2020) Research Institute of Bacterial Resistance,
            Yonsei University College of Medicine, 211, Eonjuro, Gangnam-Gu,
            Seoul 06273, Korea, Republic of
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: SPAdes v. 3.13.1
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 100x
            Sequencing Technology             :: Oxford Nanopore and Illumina
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 04/27/2020 21:11:03
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
            Genes (total)                     :: 5,517
            CDSs (total)                      :: 5,397
            Genes (coding)                    :: 5,266
            CDSs (with protein)               :: 5,266
            Genes (RNA)                       :: 120
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 85
            ncRNAs                            :: 10
            Pseudo Genes (total)              :: 131
            CDSs (without protein)            :: 131
            Pseudo Genes (ambiguous residues) :: 0 of 131
            Pseudo Genes (frameshifted)       :: 57 of 131
            Pseudo Genes (incomplete)         :: 72 of 131
            Pseudo Genes (internal stop)      :: 24 of 131
            Pseudo Genes (multiple problems)  :: 22 of 131
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..2058
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="B17KP0069"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="pB17KP0069-3"
                     /geo_loc_name="South Korea: Gyeonggi"
                     /lat_lon="37.66 N 126.77 E"
                     /collection_date="2017"
                     /collected_by="Kor-GLASS"
     gene            502..693
                     /locus_tag="HJW91_27580"
     CDS             502..693
                     /locus_tag="HJW91_27580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020324555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="QJL37685.1"
                     /translation="MIVRLDNRLFEILDEMGAHVDREMFMAAYAQRKAEKENDPRHIRQ
                     RKLTRLAHDLMSESDPEL"
                     /name="hypothetical protein"
     gene            1017..2006
                     /locus_tag="HJW91_27585"
     CDS             1017..2006
                     /locus_tag="HJW91_27585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020240588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="QJL37686.1"
                     /translation="MQNPELQNLTDYSPSDAPWDAHRSVSDDVGGIYLLAAEYERYGAR
                     MASCGGLLRFGWSTLKETGETRLRLREAHFCRVRHCPVCQWRRSLMWQARFYQSLPRIV
                     ADYPDSRWMFLTLTVRNCAIEELGETLSRMNTAFQRLKDRKEFRPVQGWIRTTEVTRGS
                     DGSAHPHFHTLMMVPPGMLNGKSYVRHERWVELWRECLRVSYDPNVDVRAVKPRKPKDG
                     ESLACATAELVRGAVAETLKYSTKPADMVADPKWFLELTRQTHKRRFVATGGALKDVLK
                     LDQETDADMVIGDDISEGDDDGSRIAFEWKTEVKKYRRSPTKDKTESD"
                     /name="protein rep"
     Typing          complement(1733..1924)
                     /name="ColpVC"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="98.446"
                     /coverage="100.0"
                     /evalue="2.86e-91"
ORIGIN
        1 tggtggcggt gtaccaaagt cacatcttgt ccgattgatt ttactccgat gcaggatagg
       61 gctaacgccg caaagtgacg tcactcgatt actgagttcg gattccgaac ctgggttttt
      121 cttccggtaa ttttccggaa ggcgcgctta gtagtttctc atctggcgat gagaaacgcg
      181 cggtggggca agcccacgaa aaacaaaaac tgataacgga caagatgtgt ttttggagta
      241 ccgccatcac gatgccggta ccaaaaacga tccgtcaggg ctgcgccccg acaccctgcc
      301 aacacctcac gccgccagat taaaatctgt cagcgttcgc cgttcccgaa atcgtcaaac
      361 gctaaatcgc ggggtcccgc tggcttgcca gtgggttccg atttagtgat tgacgacagc
      421 acccgtaaaa tacttacagg gggtggttgt gatcacgcag tgagcgcaac cacctgataa
      481 gcgttttttg agggggtagg catgatcgtc agactggata accggctgtt tgagattctc
      541 gatgagatgg gtgcgcatgt ggatcgggaa atgttcatgg cggcctatgc gcagcggaag
      601 gccgaaaaag aaaatgatcc ccggcatatc cgtcaacgga aactgaccag gttggctcat
      661 gatttgatgt cagaatcgga ccctgaattg tgagcctcgc gtgcgcgcga gggaaatcgg
      721 tcagaaaatg gccggagtct cgtgcgcgcg atccttgtat ttatacttaa gggataactc
      781 tggcgtcaaa aaacgccgcc agcccttgtg ccgcaagggt ttgagtgtta tttgcctgaa
      841 aatggttttg gaagtattct gtcgggagtg gtcgcagaaa aaagcgaccc ccgcaactgc
      901 gctaacagtt cgggggtgtg accacctgta ggaattcgaa tttggacacg acaacacagg
      961 tgatatggca atgataacac gtcaaatgag ccatcgccca gcatggggcg gtgtgcatgc
     1021 aaaatcctga actccagaac ctaactgact actccccctc agatgcgccg tgggacgctc
     1081 acagaagcgt ttctgacgac gtgggaggga tttacctgct tgcggctgaa tatgagcgct
     1141 acggggcgcg tatggcctcc tgtggcggtt tactgaggtt tgggtggtct accctcaaag
     1201 aaaccggaga aacgcgcctg aggctgcgtg aggcgcattt ctgccgtgtc cggcactgtc
     1261 ctgtctgcca gtggaggcgc tccctgatgt ggcaagcccg tttctaccag tccctgccgc
     1321 gtatcgtggc ggattacccc gattcccgct ggatgtttct gaccctgacc gtgcgcaact
     1381 gcgcgatcga ggagctgggc gagacgctga gccggatgaa cacggctttc cagcgactga
     1441 aggaccgtaa agagttccga ccagttcagg gctggatacg caccacggaa gtcacccgcg
     1501 gcagtgacgg cagcgcacac ccgcacttcc acaccctgat gatggttccg ccgggcatgc
     1561 ttaacgggaa gagttacgtc aggcatgaac gctgggttga gctgtggcgt gagtgcctgc
     1621 gggtcagtta cgatccgaat gtcgatgtcc gggcagtgaa accccgcaag ccgaaggacg
     1681 gcgaatcgct ggcctgcgcg accgccgaac tggtgcgcgg cgcagtggcc gaaaccctga
     1741 aatattccac gaagccggcc gacatggtgg ccgatcctaa atggttcctc gaactgaccc
     1801 gccagacgca caagcgccgc tttgtggcga ccggcggcgc actcaaagac gtgctgaaac
     1861 tcgatcagga aaccgacgcc gacatggtga tcggggatga tatttccgag ggcgatgatg
     1921 acggttcccg catcgcgttc gagtggaaga ccgaggtcaa aaagtaccgg cgttcgccga
     1981 cgaaagataa aaccgaatca gactaacagg gtgtcggggc tgcgccctga ccatgagggc
     2041 tttgggcatc cgtcacct
//
