LOCUS       CP052442                3991 bp    DNA     circular BCT 04-MAY-2020
DEFINITION  Klebsiella pneumoniae strain C16KP0102 plasmid pC16KP0102-2,
            complete sequence.
ACCESSION   CP052442
VERSION     CP052442.1
DBLINK      BioProject: PRJNA625837
            BioSample: SAMN14609889
KEYWORDS    .
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 3991)
  AUTHORS   Yoon,E.-J., Gwon,B., Liu,C., Kim,D., Won,D., Park,S.G., Choi,J.R.
            and Jeong,S.H.
  TITLE     Built-in CTX-M extended-spectrum beta-lactamase gene in Klebsiella
            pneumoniae ensuring stable propagation of the multidrug-resistant
            pathogen in clinical settings
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3991)
  AUTHORS   Yoon,E.-J., Gwon,B., Liu,C., Kim,D., Won,D., Park,S.G., Choi,J.R.
            and Jeong,S.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-APR-2020) Research Institute of Bacterial Resistance,
            Yonsei University College of Medicine, 211, Eonjuro, Gangnam-Gu,
            Seoul 06273, Korea, Republic of
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: SPAdes v. 3.13.1
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 100x
            Sequencing Technology             :: Oxford Nanopore and Illumina
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 04/27/2020 20:55:45
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
            Genes (total)                     :: 5,575
            CDSs (total)                      :: 5,452
            Genes (coding)                    :: 5,340
            CDSs (with protein)               :: 5,340
            Genes (RNA)                       :: 123
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 85
            ncRNAs                            :: 13
            Pseudo Genes (total)              :: 112
            CDSs (without protein)            :: 112
            Pseudo Genes (ambiguous residues) :: 0 of 112
            Pseudo Genes (frameshifted)       :: 55 of 112
            Pseudo Genes (incomplete)         :: 52 of 112
            Pseudo Genes (internal stop)      :: 19 of 112
            Pseudo Genes (multiple problems)  :: 12 of 112
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..3991
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="C16KP0102"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="pC16KP0102-2"
                     /geo_loc_name="South Korea: Gangwon"
                     /lat_lon="37.82 N 128.16 E"
                     /collection_date="2016"
                     /collected_by="Kor-GLASS"
     gene            join(3770..3991,1..188)
                     /locus_tag="HJX01_27860"
                     /pseudo=""
     CDS             join(3770..3991,1..188)
                     /locus_tag="HJX01_27860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005229779.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="plasmid replication initiation protein"
                     /name="plasmid replication initiation protein"
     gene            complement(569..1543)
                     /locus_tag="HJX01_27865"
     CDS             complement(569..1543)
                     /locus_tag="HJX01_27865"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="QJK63219.1"
                     /translation="MAFFNLLFVASLICFGGVMGSYSRGCRDSQNKFSKDKDENNKRAS
                     VYRFGIASAFICVPFISSFLHVDYSSIIFPVADGGGTKFIEQILLLISVSGISAYLGYA
                     LLDGLANKVLKEQVDGIDKKQQDLEAEQDEFKDELDRSKELIEQLEMDKKTTKFELGYF
                     KAISAVDKAESMMSIPDEALSVKKKLTEALDAVTESLSLVKREDVAKDDYDKLLVLKAY
                     ILKRLDRIDDALSITDELLMSNEDNPILIYNKACYQYILRRCQADNSDIKDMIRRALTI
                     KVTDPEFIRRQEKIRTKVIGNKDNDLEGLFTDAELEELKVAIK"
                     /name="hypothetical protein"
     gene            complement(2124..2396)
                     /locus_tag="HJX01_27870"
     CDS             complement(2124..2396)
                     /locus_tag="HJX01_27870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004698336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="QJK63220.1"
                     /translation="MATDAQVKEINALIKKYPDSCSICHEVYDEDDVTYTVFGYDRKGK
                     IQVTTGCCAGMLTEPVLLGVCGCFDPEERDEIMQNHPMAKQFFTE"
                     /name="hypothetical protein"
     gene            complement(3200..3622)
                     /locus_tag="HJX01_27875"
     CDS             complement(3200..3622)
                     /locus_tag="HJX01_27875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005229777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="QJK63221.1"
                     /translation="MAIVSISEAARLVKVSRPTIYKMINSGKLSYTSVVKHGKAIKVID
                     TSELIRVFGSLDGVIDTVKYDVKSDAESTGINSVGLHDLQHRIALLEAENDGLKGAVKA
                     RDEHIDSLRQAMQLLEHKHEPSSPPHSPWWKFWKKS"
                     /name="helix-turn-helix domain-containing protein"
     Typing          2..342
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="91.304"
                     /coverage="84.0"
                     /evalue="2.92e-129"
ORIGIN
        1 ataggctccg cccccctgac aagcatcgcg gaaacggacg ctcaaatcag tggtggcgaa
       61 acccgacagg acttaaagat accaggcgtt tccccctggt ggctccctcg tgcgctctcc
      121 tgttcctgcc tttcggttta ccggtgtcat tccgctgtta tggccgcgtt ttctcattcc
      181 atgcctgata ctcggctccg ggaaggcagt tcgctccaag ctggactgta tgcacgaacc
      241 ccccgttcag tccgactgct gcgcccgttc cagtaactat ctcttgagtc caacccggaa
      301 agacacgact tatcgccatt ggcagcagcc actggtaatt gatttagagg agttagtctt
      361 gaagttatgc gccagttaag gctaaactaa acgaactgtt ttggtgactg cgctcctcta
      421 agccagttac ctcggttcag aaacttgccg gttactgaac cttcgaaaaa ccaccttgcc
      481 gggtggtttt ttcgtttgag gggtagagta cgctgcacct caaaggatcg tcaaggatct
      541 ttttggaatt catagagcta gccactgcct atttgatagc cacctttaat tcctccagct
      601 cagcgtcagt aaacaaccct tcaagatcat tatctttatt tcctatgacc ttggttctta
      661 ttttttcttg cctgcgaatg aattcaggat ctgtaacttt aatagtcaga gccctgcgaa
      721 tcatatcctt aatatcggag ttatcagctt ggcaacgacg caaaatatat tgatagcaag
      781 ccttattgta aataagtata gggttatcct cattactcat aagtaactca tccgtaattg
      841 acagagcatc atcaatacga tcaagtcttt tcaaaatata agctttaagc actaagagct
      901 tgtcgtagtc atccttagct acatcctctc ttttaacaag agacaatgat tccgttacag
      961 catctaatgc ctcagttagt tttttcttaa cagaaagagc ctcatccgga atggacatca
     1021 ttgattctgc tttatccaca gctgaaatgg ctttaaagta tcctagctcg aattttgttg
     1081 ttttcttatc catttcaagc tgttctatca gctccttgct cctatcaagc tcatctttaa
     1141 actcatcttg ttcagcctcc aaatcttgtt gctttttatc tataccgtct acttgctctt
     1201 ttaatacttt gttggcaaga ccatccagta atgcgtaccc aagatacgca gagatccccg
     1261 aaacagaaat aagaagcaat atttgttcta tgaacttagt tccaccacca tcagccacag
     1321 gaaatattat acttgagtaa tcaacatgaa gaaatgatga tatgaaagga acacaaataa
     1381 atgcggatgc tataccaaat ctataaacac tagctctttt attattctca tccttatctt
     1441 ttgaaaattt attttgggag tctcggcaac ctctggaata gctccccata acaccaccaa
     1501 aacaaattag agatgcaaca aacaataggt taaaaaaagc catgagagaa tccttgcgca
     1561 aagcaaacaa taaaactttg ttcaggtaag ttaagataag ctcaatcata tactaaccaa
     1621 taacaaaaaa ggcagccttg gctgcctttt tctgctgact tgacacttac aagtctggac
     1681 gctcatcgtg aagtttgatt tttttcatag agcacctctc attaattgtt cctttgcaag
     1741 cccatgcttg cttagcgctg aatatagggc ataaacccag cactcacaac aacaaaaatg
     1801 cttaaaatga taaaatcaac ccatgtattg acattgggtg aaaaaaaaag tataatgcac
     1861 tggtagccaa aggggcgggg cttcgcttat tccttaggaa taagcgaagc cccgcccctt
     1921 tggctaccat aattaaatga ttgaatttaa aggatttttt tacaataaca tccttcctct
     1981 caatagtcat ataaacatgc cccatgtatt cgtcattctg gatttttcaa aagaatgaat
     2041 gcgtgcattt accataacgc ctcatttcac gcagatatga aaaagcccgc acaaggcggg
     2101 cttcagactc aacagatacg gaatcactct gtgaaaaact gctttgccat ggggtgattc
     2161 tgcatgatct cgtcacgttc ttccgggtca aagcacccac agacacccag cagaaccggc
     2221 tctgtcagca ttccggcaca gcatcccgtg gtgacctgta ttttaccttt ccggtcatac
     2281 ccaaaaacgg tgtaggtcac atcatcctca tcatagactt catgacagat ggagcatgag
     2341 tccgggtatt ttttgatgag tgcattaatt tcttttacct gagcgtcagt agccaaaaca
     2401 tctccctgag tcactgatta tcacaatccg ctgactctaa cacagactca ggcatccgcc
     2461 gttgatttac cataacgtcc cattacacgc accgctaaaa cggcctcaga acgattctgg
     2521 ggcgtaaccc attaaatcct acgtcttacc ccctgaaaac gcctcaaaat cgctccaggg
     2581 cgttttacgg gcatgaatcg ttatgcactt gactgactgt ctggggattt cagcctgaat
     2641 tcaggccagg caactcaaaa cccgcaccaa accagactga aaacggtgaa cgggtgcgca
     2701 atttattgcg tggccgtgaa gcgttgccgg cgcagccgga aaaccggttt tcagcacgtt
     2761 caggaatcgg gtttgtcgag accagcaatc acattatggc aagtcgccgg acgactcacc
     2821 acacgattca ccggcgattc gactcgtgac ttgactctag agtcgccatg gtcaaaaagc
     2881 caccaacccg gcaagtcgac tctagagtca agtcatcata acgtactgat tatatggcgt
     2941 gattcacata tgaatcgtgg gcaagtcatc ggcgattcgc catagagtcg tccacgactc
     3001 ggattcacct tacaaaaaat aaaattgcgt aatttaaaat agataactga ttgaaaataa
     3061 aggtctatct gcaaaatttt aattttgcgt agtgtgtggg tatttttagt ggtgaggagc
     3121 gttcagggat ctgacgattt ttgggaaggt tcaggaactc cccggaatgg ccggagagca
     3181 aaatggaagc atggcgggat caggattttt tccagaattt ccaccacggg gaatggggtg
     3241 gtgaagaagg ttcgtgcttg tgctccagaa gctgcatagc ctgacgaagg gaatcaatat
     3301 gctcatctcg agccttaaca gcccctttaa gaccatcgtt ttcagcttca agtaaagcga
     3361 ttctatgttg taaatcatgt aaaccaacgc tgttaatacc tgtagattct gcgtcacttt
     3421 ttacatcata ttttacagta tcgattacac catcaagaga accaaacact ctaattagct
     3481 ctgaagtatc aataacttta atagctttcc cgtgctttac cacagaggtg taacttaact
     3541 tcccactgtt aatcatcttg taaattgtgg ggcgactaac cttaacaagc cgtgccgctt
     3601 cactaataga cactatggcc atcagttacc atcctgtaat tcatccagtc tcgaggacag
     3661 tgtacggaaa agatgctccg catcatcatg gagtttctca caaaggtcgg cctcgacatc
     3721 gagatcaagc tcgttaagct tatccagcag gagcagagac tgattctgga tgaatttagc
     3781 catgttcagc gctgttttct gttgttttgt cataagaagc ctcagagcgt cagtgctcaa
     3841 tgtcaaacta gtctcttttc cgcttcctcg ctcactcagt cgctacgctc cagccgttcg
     3901 gctgcggcga gcggcaggag cgtgtacata aaaacgtagg caaccaagat atgaggcaga
     3961 aaagcaaagg ccgccgaacg gctgtttttc c
//
