LOCUS       CP052426                2058 bp    DNA     circular BCT 04-MAY-2020
DEFINITION  Klebsiella pneumoniae strain C16KP0164 plasmid pC16KP0164-4,
            complete sequence.
ACCESSION   CP052426
VERSION     CP052426.1
DBLINK      BioProject: PRJNA625837
            BioSample: SAMN14609894
KEYWORDS    .
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 2058)
  AUTHORS   Yoon,E.-J., Gwon,B., Liu,C., Kim,D., Won,D., Park,S.G., Choi,J.R.
            and Jeong,S.H.
  TITLE     Built-in CTX-M extended-spectrum beta-lactamase gene in Klebsiella
            pneumoniae ensuring stable propagation of the multidrug-resistant
            pathogen in clinical settings
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2058)
  AUTHORS   Yoon,E.-J., Gwon,B., Liu,C., Kim,D., Won,D., Park,S.G., Choi,J.R.
            and Jeong,S.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-APR-2020) Research Institute of Bacterial Resistance,
            Yonsei University College of Medicine, 211, Eonjuro, Gangnam-Gu,
            Seoul 06273, Korea, Republic of
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: SPAdes v. 3.13.1
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 100x
            Sequencing Technology             :: Oxford Nanopore and Illumina
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 04/27/2020 20:56:00
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
            Genes (total)                     :: 5,455
            CDSs (total)                      :: 5,331
            Genes (coding)                    :: 5,192
            CDSs (with protein)               :: 5,192
            Genes (RNA)                       :: 124
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 10
            Pseudo Genes (total)              :: 139
            CDSs (without protein)            :: 139
            Pseudo Genes (ambiguous residues) :: 0 of 139
            Pseudo Genes (frameshifted)       :: 73 of 139
            Pseudo Genes (incomplete)         :: 63 of 139
            Pseudo Genes (internal stop)      :: 22 of 139
            Pseudo Genes (multiple problems)  :: 18 of 139
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..2058
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="C16KP0164"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="pC16KP0164-4"
                     /geo_loc_name="South Korea: Gangwon"
                     /lat_lon="37.82 N 128.16 E"
                     /collection_date="2016"
                     /collected_by="Kor-GLASS"
     gene            join(1869..2058,1..800)
                     /locus_tag="HJX06_27270"
     CDS             join(1869..2058,1..800)
                     /locus_tag="HJX06_27270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020240588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="QJK84072.1"
                     /translation="MQNPELQNLTDYSPSDAPWDAHRSVSDDVGGIYLLAAEYERYGAR
                     MASCGGLLRFGWSTLKETGETRLRLREAHFCRVRHCPVCQWRRSLMWQARFYQSLPRIV
                     ADYPDSRWMFLTLTVRNCAIEELGETLSRMNTAFQRLKDRKEFRPVQGWIRTTEVTRGS
                     DGSAHPHFHTLMMVPPGMLNGKSYVRHERWVELWRECLRVSYDPNVDVRAVKPRKPKDG
                     ESLACATAELVRGAVAETLKYSTKPADMVADPKWFLELTRQTHKRRFVATGGALKDVLK
                     LDQETDADMVIGDDISEGDDDGSRIAFEWKTEVKKYRRSPTKDKTESD"
                     /name="protein rep"
     gene            1354..1545
                     /locus_tag="HJX06_27275"
     CDS             1354..1545
                     /locus_tag="HJX06_27275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020324555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="QJK84073.1"
                     /translation="MIVRLDNRLFEILDEMGAHVDREMFMAAYAQRKAEKENDPRHIRQ
                     RKLTRLAHDLMSESDPEL"
                     /name="hypothetical protein"
     Typing          complement(527..718)
                     /name="ColpVC"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="98.446"
                     /coverage="100.0"
                     /evalue="2.86e-91"
ORIGIN
        1 gagaaacgcg cctgaggctg cgtgaggcgc atttctgccg tgtccggcac tgtcctgtct
       61 gccagtggag gcgctccctg atgtggcaag cccgtttcta ccagtccctg ccgcgtatcg
      121 tggcggatta ccccgattcc cgctggatgt ttctgaccct gaccgtgcgc aactgcgcga
      181 tcgaggagct gggcgagacg ctgagccgga tgaacacggc tttccagcga ctgaaggacc
      241 gtaaagagtt ccgaccagtt cagggctgga tacgcaccac ggaagtcacc cgcggcagtg
      301 acggcagcgc acacccgcac ttccacaccc tgatgatggt tccgccgggc atgcttaacg
      361 ggaagagtta cgtcaggcat gaacgctggg ttgagctgtg gcgtgagtgc ctgcgggtca
      421 gttacgatcc gaatgtcgat gtccgggcag tgaaaccccg caagccgaag gacggcgaat
      481 cgctggcctg cgcgaccgcc gaactggtgc gcggcgcagt ggccgaaacc ctgaaatatt
      541 ccacgaagcc ggccgacatg gtggccgatc ctaaatggtt cctcgaactg acccgccaga
      601 cgcacaagcg ccgctttgtg gcgaccggcg gcgcactcaa agacgtgctg aaactcgatc
      661 aggaaaccga cgccgacatg gtgatcgggg atgatatttc cgagggcgat gatgacggtt
      721 cccgcatcgc gttcgagtgg aagaccgagg tcaaaaagta ccggcgttcg ccgacgaaag
      781 ataaaaccga atcagactaa cagggtgtcg gggctgcgcc ctgaccatga gggctttggg
      841 catccgtcac cttggtggcg gtgtaccaaa gtcacatctt gtccgattga ttttactccg
      901 atgcaggata gggctaacgc cgcaaagtga cgtcactcga ttactgagtt cggattccga
      961 acctgggttt ttcttccggt aattttccgg aaggcgcgct tagtagtttc tcatctggcg
     1021 atgagaaacg cgcggtgggg caagcccacg aaaaacaaaa actgataacg gacaagatgt
     1081 gtttttggag taccgccatc acgatgccgg taccaaaaac gatccgtcag ggctgcgccc
     1141 cgacaccctg ccaacacctc acgccgccag attaaaatct gtcagcgttc gccgttcccg
     1201 aaatcgtcaa acgctaaatc gcggggtccc gctggcttgc cagtgggttc cgatttagtg
     1261 attgacgaca gcacccgtaa aatacttaca gggggtggtt gtgatcacgc agtgagcgca
     1321 accacctgat aagcgttttt tgagggggta ggcatgatcg tcagactgga taaccggctg
     1381 tttgagattc tcgatgagat gggtgcgcat gtggatcggg aaatgttcat ggcggcctat
     1441 gcgcagcgga aggccgaaaa agaaaatgat ccccggcata tccgtcaacg gaaactgacc
     1501 aggttggctc atgatttgat gtcagaatcg gaccctgaat tgtgagcctc gcgtgcgcgc
     1561 gagggaaatc ggtcagaaaa tggccggagt ctcgtgcgcg cgatccttgt atttatactt
     1621 aagggataac tctggcgtca aaaaacgccg ccagcccttg tgccgcaagg gtttgagtgt
     1681 tatttgcctg aaaatggttt tggaagtatt ctgtcgggag tggtcgcaga aaaaagcgac
     1741 ccccgcaact gcgctaacag ttcgggggtg tgaccacctg taggaattcg aatttggaca
     1801 cgacaacaca ggtgatatgg caatgataac acgtcaaatg agccatcgcc cagcatgggg
     1861 cggtgtgcat gcaaaatcct gaactccaga acctaactga ctactccccc tcagatgcgc
     1921 cgtgggacgc tcacagaagc gtttctgacg acgtgggagg gatttacctg cttgcggctg
     1981 aatatgagcg ctacggggcg cgtatggcct cctgtggcgg tttactgagg tttgggtggt
     2041 ctaccctcaa agaaaccg
//
