LOCUS       CP052421                2117 bp    DNA     circular BCT 04-MAY-2020
DEFINITION  Klebsiella pneumoniae strain C16KP0189 plasmid pC16KP0189-7,
            complete sequence.
ACCESSION   CP052421
VERSION     CP052421.1
DBLINK      BioProject: PRJNA625837
            BioSample: SAMN14609895
KEYWORDS    .
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 2117)
  AUTHORS   Yoon,E.-J., Gwon,B., Liu,C., Kim,D., Won,D., Park,S.G., Choi,J.R.
            and Jeong,S.H.
  TITLE     Built-in CTX-M extended-spectrum beta-lactamase gene in Klebsiella
            pneumoniae ensuring stable propagation of the multidrug-resistant
            pathogen in clinical settings
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2117)
  AUTHORS   Yoon,E.-J., Gwon,B., Liu,C., Kim,D., Won,D., Park,S.G., Choi,J.R.
            and Jeong,S.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-APR-2020) Research Institute of Bacterial Resistance,
            Yonsei University College of Medicine, 211, Eonjuro, Gangnam-Gu,
            Seoul 06273, Korea, Republic of
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: SPAdes v. 3.13.1
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 100x
            Sequencing Technology             :: Oxford Nanopore and Illumina
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 04/27/2020 21:08:16
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
            Genes (total)                     :: 5,713
            CDSs (total)                      :: 5,586
            Genes (coding)                    :: 5,455
            CDSs (with protein)               :: 5,455
            Genes (RNA)                       :: 127
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 13
            Pseudo Genes (total)              :: 131
            CDSs (without protein)            :: 131
            Pseudo Genes (ambiguous residues) :: 0 of 131
            Pseudo Genes (frameshifted)       :: 70 of 131
            Pseudo Genes (incomplete)         :: 63 of 131
            Pseudo Genes (internal stop)      :: 18 of 131
            Pseudo Genes (multiple problems)  :: 19 of 131
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..2117
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="C16KP0189"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="pC16KP0189-7"
                     /geo_loc_name="South Korea: Gangwon"
                     /lat_lon="37.82 N 128.16 E"
                     /collection_date="2016"
                     /collected_by="Kor-GLASS"
     gene            complement(1571..1894)
                     /locus_tag="HJX07_28565"
     CDS             complement(1571..1894)
                     /locus_tag="HJX07_28565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000716773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="QJL05213.1"
                     /translation="MKKLVAIGLGVLILSGCATQKQMTPMGGSKADGTVKMGYTFGMFE
                     KPVVDLNSAKDLAGQKCKTWGYTGAEAFGGQTSTCAQVGAYGCEMTNVSIEYQCTGGKA
                     SEN"
                     /name="hypothetical protein"
     Typing          414..629
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="91.284"
                     /coverage="100.0"
                     /evalue="7.22e-78"
ORIGIN
        1 gtccgacgtc tctcacatca ccgcgtactg ctgccttttt cgctcatttt atcaggtgca
       61 agttatcgta ctgcgagacg gggtagagcc taactctttc gcggttaagt tacgttccca
      121 ccaatttgcc tgtttatcct gccggagtcc ggggcgtaga cctgagcgtc taaggtgcag
      181 atatgatttt aatgtcgttg aatggtatta agctggtagt gacatggcta gccagccctg
      241 ctaagatttg attgcgacgt ctaatccagc aggtatctgc acgaattaga gtaccgaagc
      301 cctgtgatta tgtcacgggg cttttgtaca tttagcgccc gagaatcaaa aacatccctt
      361 cagaacttat gtaacgcccg ccgcagtctc acggcaggag cgcagcgacc aagtgagcga
      421 ggaggcgaca tttcatcctt acctgcatgt tgcacttacg ccccgcagct acatttttcc
      481 cctgccacat gaagcacttc cctgaattcc cacttcgctt taccatatta agccagtata
      541 cactccgcta gcgctacgtg actggttcag ggctgcgccc cgaaacccgc taacaacctc
      601 tctgctactg gatatcaccc catgccatct gaatatgatg aacaacgggg ttcgactgat
      661 acgcagcttc ccggcgaata tgaccttttt gatttaatgg cgaaggttac tgaagagatc
      721 ctgcatgccc ctgtggattc tgggccgcct gtcggccggg aagcgttata gctttttcgc
      781 ttgcccgcgt acgtggtaat acgccggtat taccttttat ttctttattt tcatgtaatt
      841 acagtgggtt tttaatacct gggtattact cgtgaaaacg aaacattact tttttttctt
      901 ttaattcatg cagttgcgat gaaaatcgcg gctgcgttag gtgtatgacc attttgaggt
      961 tgaaaaataa tcaaccatgg cgggtgattt acgcaggtta aggggagatc gtgacaaaaa
     1021 aaagcgttcc tcactgtatc gttcatgcct gcatgaacgg gttattcttc ctgactacag
     1081 aattacatcg ctccttcagt tcatacatca cttttacaac acttttacaa cactccttcg
     1141 gcctgtacat cacttttaca acacttttgc atcactttta catcatttat acatcacttt
     1201 tacatcattc cttcagctca tacgtcactt tcatcctctg tgccatttgt acatcacccc
     1261 cttcctgaac gtgctgacag cgggttttcc ggctgcgccg gcaacgcttc acggccacgc
     1321 aataaattgc gtccccgttc accgttttcg gatgggaaga acgccggaaa caggacttcc
     1381 cctggctgaa tggtgtgaat ttccgcgcta tgcacttgcg cgcatactca tgcatgccgt
     1441 aaaaacagag cctgcgcgtt tctggcgggt tttcgggtgg tttgttgcct gttttaccgg
     1501 tttcccgtca gaaacgccct cagagcctct caggcggtgc acgcaaggga tgttatggta
     1561 aatgttgaac ttagttttct gaagctttcc caccggtgca ttggtactcg attgaaacgt
     1621 tggtcatctc acaaccataa gccccgacct gtgcgcaggt ggatgtttgg ccgccaaatg
     1681 cctcagcccc agtgtatccc catgttttac atttttgtcc agccagatct ttagctgagt
     1741 tcagatcaac aacgggtttt tcaaacatcc caaaggtgta acccattttc actgtaccat
     1801 cagctttact cccccccatc ggggtcattt gtttttgcgt tgcgcagcct gaaagaatta
     1861 aaacgcctaa accgatcgct actagttttt tcatttttta tttcccggat gattgttcgg
     1921 aattatctta acgggaagtt tacacaaggc aacaccctct gtaatcctct gattatttga
     1981 ggtatcccat aaaaaaatca aagaaagcct aatgcccccg tggtgggtat ataaaaatac
     2041 ggggagcgga gcgaccttcg tctagctctt gttttgtttt tcttgccgcg caactggctt
     2101 gattgtgtgg gtgttgt
//
