LOCUS       CP052413                2117 bp    DNA     circular BCT 04-MAY-2020
DEFINITION  Klebsiella pneumoniae strain C17KP0008 plasmid pC17KP0008-6,
            complete sequence.
ACCESSION   CP052413
VERSION     CP052413.1
DBLINK      BioProject: PRJNA625837
            BioSample: SAMN14609897
KEYWORDS    .
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 2117)
  AUTHORS   Yoon,E.-J., Gwon,B., Liu,C., Kim,D., Won,D., Park,S.G., Choi,J.R.
            and Jeong,S.H.
  TITLE     Built-in CTX-M extended-spectrum beta-lactamase gene in Klebsiella
            pneumoniae ensuring stable propagation of the multidrug-resistant
            pathogen in clinical settings
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2117)
  AUTHORS   Yoon,E.-J., Gwon,B., Liu,C., Kim,D., Won,D., Park,S.G., Choi,J.R.
            and Jeong,S.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-APR-2020) Research Institute of Bacterial Resistance,
            Yonsei University College of Medicine, 211, Eonjuro, Gangnam-Gu,
            Seoul 06273, Korea, Republic of
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: SPAdes v. 3.13.1
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 100x
            Sequencing Technology             :: Oxford Nanopore and Illumina
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 04/27/2020 20:46:19
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
            Genes (total)                     :: 5,628
            CDSs (total)                      :: 5,501
            Genes (coding)                    :: 5,371
            CDSs (with protein)               :: 5,371
            Genes (RNA)                       :: 127
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 13
            Pseudo Genes (total)              :: 130
            CDSs (without protein)            :: 130
            Pseudo Genes (ambiguous residues) :: 0 of 130
            Pseudo Genes (frameshifted)       :: 73 of 130
            Pseudo Genes (incomplete)         :: 65 of 130
            Pseudo Genes (internal stop)      :: 16 of 130
            Pseudo Genes (multiple problems)  :: 22 of 130
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..2117
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="C17KP0008"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="pC17KP0008-6"
                     /geo_loc_name="South Korea: Gangwon"
                     /lat_lon="37.82 N 128.16 E"
                     /collection_date="2017"
                     /collected_by="Kor-GLASS"
     gene            complement(1825..2073)
                     /locus_tag="HJX09_28140"
     CDS             complement(1825..2073)
                     /locus_tag="HJX09_28140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014885113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="QJK36846.1"
                     /translation="MGGSKADGTVKMGYTFGMFEKPVVDLNSAKDLAGQKCKTWGYTGA
                     EAFGGQTSTCAQVGAYGCEMTNVSIEYQCTGGKASEN"
                     /name="hypothetical protein"
     Typing          668..883
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="91.284"
                     /coverage="100.0"
                     /evalue="7.22e-78"
ORIGIN
        1 cgcctaaacc gatcgctact agttttttca ttttttattt cccggatgat tgttcggaat
       61 tatcttaacg ggaagtttac acaaggcaac accctctgta atcctctgat tatttgaggt
      121 atcccataaa aaaatcaaag aaagcctaat gcccccgtgg tgggtatata aaaatacggg
      181 gagcggagcg accttcgtct agctcttgtt ttgtttttct tgccgcgcaa ctggcttgat
      241 tgtgtgggtg ttgtgtccga cgtctctcac atcaccgcgt actgctgcct ttttcgctca
      301 ttttatcagg tgcaagttat cgtactgcga gacggggtag agcctaactc tttcgcggtt
      361 aagttacgtt cccaccaatt tgcctgttta tcctgccgga gtccggggcg tagacctgag
      421 cgtctaaggt gcagatatga ttttaatgtc gttgaatggt attaagctgg tagtgacatg
      481 gctagccagc cctgctaaga tttgattgcg acgtctaatc cagcaggtat ctgcacgaat
      541 tagagtaccg aagccctgtg attatgtcac ggggcttttg tacatttagc gcccgagaat
      601 caaaaacatc ccttcagaac ttatgtaacg cccgccgcag tctcacggca ggagcgcagc
      661 gaccaagtga gcgaggaggc gacatttcat ccttacctgc atgttgcact tacgccccgc
      721 agctacattt ttcccctgcc acatgaagca cttccctgaa ttcccacttc gctttaccat
      781 attaagccag tatacactcc gctagcgcta cgtgactggt tcagggctgc gccccgaaac
      841 ccgctaacaa cctctctgct actggatatc accccatgcc atctgaatat gatgaacaac
      901 ggggttcgac tgatacgcag cttcccggcg aatatgacct ttttgattta atggcgaagg
      961 ttactgaaga gatcctgcat gcccctgtgg attctgggcc gcctgtcggc cgggaagcgt
     1021 tatagctttt tcgcttgccc gcgtacgtgg taatacgccg gtattacctt ttatttcttt
     1081 attttcatgt aattacagtg ggtttttaat acctgggtat tactcgtgaa aacgaaacat
     1141 tacttttttt tcttttaatt catgcagttg cgatgaaaat cgcggctgcg ttaggtgtat
     1201 gaccattttg aggttgaaaa ataatcaacc atggcgggtg atttacgcag gttaagggga
     1261 gatcgtgaca aaaaaaagcg ttcctcactg tatcgttcat gcctgcatga acgggttatt
     1321 cttcctgact acagaattac atcgctcctt cagttcatac atcactttta caacactttt
     1381 acaacactcc ttcggcctgt acatcacttt tacaacactt ttgcatcact tttacatcat
     1441 ttatacatca cttttacatc attccttcag ctcatacgtc actttcatcc tctgtgccat
     1501 ttgtacatca cccccttcct gaacgtgctg acagcgggtt ttccggctgc gccggcaacg
     1561 cttcacggcc acgcaataaa ttgcgtcccc gttcaccgtt ttcggatggg aagaacgccg
     1621 gaaacaggac ttcccctggc tgaatggtgt gaatttccgc gctatgcact tgcgcgcata
     1681 ctcatgcatg ccgtaaaaac agagcctgcg cgtttctggc gggttttcgg gtggtttgtt
     1741 gcctgtttta ccggtttccc gtcagaaacg ccctcagagc ctctcaggcg gtgcacgcaa
     1801 gggatgttat ggtaaatgtt gaacttagtt ttctgaagct ttcccaccgg tgcattggta
     1861 ctcgattgaa acgttggtca tctcacaacc ataagccccg acctgtgcgc aggtggatgt
     1921 ttggccgcca aatgcctcag ccccagtgta tccccatgtt ttacattttt gtccagccag
     1981 atctttagct gagttcagat caacaacggg tttttcaaac atcccaaagg tgtaacccat
     2041 tttcactgta ccatcagctt tactcccccc catcggggtc atttgttttt gcgttgcgca
     2101 gcctgaaaga attaaaa
//
