LOCUS       CP052403                4165 bp    DNA     circular BCT 04-MAY-2020
DEFINITION  Klebsiella pneumoniae strain C17KP0039 plasmid pC17KP0039-4,
            complete sequence.
ACCESSION   CP052403
VERSION     CP052403.1
DBLINK      BioProject: PRJNA625837
            BioSample: SAMN14609901
KEYWORDS    .
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 4165)
  AUTHORS   Yoon,E.-J., Gwon,B., Liu,C., Kim,D., Won,D., Park,S.G., Choi,J.R.
            and Jeong,S.H.
  TITLE     Built-in CTX-M extended-spectrum beta-lactamase gene in Klebsiella
            pneumoniae ensuring stable propagation of the multidrug-resistant
            pathogen in clinical settings
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4165)
  AUTHORS   Yoon,E.-J., Gwon,B., Liu,C., Kim,D., Won,D., Park,S.G., Choi,J.R.
            and Jeong,S.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-APR-2020) Research Institute of Bacterial Resistance,
            Yonsei University College of Medicine, 211, Eonjuro, Gangnam-Gu,
            Seoul 06273, Korea, Republic of
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: SPAdes v. 3.13.1
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 100x
            Sequencing Technology             :: Oxford Nanopore and Illumina
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 04/27/2020 20:57:33
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
            Genes (total)                     :: 6,037
            CDSs (total)                      :: 5,913
            Genes (coding)                    :: 5,772
            CDSs (with protein)               :: 5,772
            Genes (RNA)                       :: 124
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 88
            ncRNAs                            :: 11
            Pseudo Genes (total)              :: 141
            CDSs (without protein)            :: 141
            Pseudo Genes (ambiguous residues) :: 0 of 141
            Pseudo Genes (frameshifted)       :: 63 of 141
            Pseudo Genes (incomplete)         :: 79 of 141
            Pseudo Genes (internal stop)      :: 19 of 141
            Pseudo Genes (multiple problems)  :: 18 of 141
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..4165
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="C17KP0039"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="pC17KP0039-4"
                     /geo_loc_name="South Korea: Gangwon"
                     /lat_lon="37.82 N 128.16 E"
                     /collection_date="2017"
                     /collected_by="Kor-GLASS"
     gene            join(3598..4165,1..83)
                     /locus_tag="HJX13_30165"
     CDS             join(3598..4165,1..83)
                     /locus_tag="HJX13_30165"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="QJL21605.1"
                     /translation="MRYVKISLSVATFLLFWYVSSFFTGCSDGWGSSSIGLRGACSYHG
                     GVSKLPIIIIFLGLIASFFVFFLFPDSESATSKKDTFPVVNKESNESIPKIKTNTHNEI
                     KVKRELKIEIENLNDKKFSKIFIYSDGLFIKEFNPENKMKVSTKRINKNKILKISNLLR
                     EGKGGAINPILDVEAKGYLVRLFENHAHESKTYFIDRSEKQAFSDIKELINSV"
                     /name="hypothetical protein"
     gene            461..652
                     /locus_tag="HJX13_30170"
     CDS             461..652
                     /locus_tag="HJX13_30170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001041614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="QJL21601.1"
                     /translation="MNKQQKTAVNMAKFIQAQSLLLLDRLNDLDLDHEADFCEKLHEDA
                     ERLYRSLSARLNEQQDGA"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            1124..1315
                     /locus_tag="HJX13_30175"
     CDS             1124..1315
                     /locus_tag="HJX13_30175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000166328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="QJL21602.1"
                     /translation="MTKQQKTALNMAKFIQNQSLLLLEKLNELDLDAEADLCEKLHDDA
                     EHLFRTLSSRLDELLDGN"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            1315..1725
                     /locus_tag="HJX13_30180"
     CDS             1315..1725
                     /locus_tag="HJX13_30180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005229777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="QJL21603.1"
                     /translation="MARVSISEAARLVKVSRPTIYKMINSGKLSYTSVVKHGKSIKVID
                     TSELIRVFGSLDGVIDDVKSDAESTGINSVGLHDLQHRIALLEAENDGLKGAVKARDEH
                     IDSLRQAMQLLEHKHEPSSPPHSPWWKFWKKS"
                     /name="helix-turn-helix domain-containing protein"
     gene            2646..3581
                     /locus_tag="HJX13_30185"
     CDS             2646..3581
                     /locus_tag="HJX13_30185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006674370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replicase"
                     /protein_id="QJL21604.1"
                     /translation="MTKPPLDLFNDRLPNKPYFSDDLHFGVRIAGKERAILAKYIQFNQ
                     PHAMFWLGFDVDRTGAAIDWSDRNAPAPTLTITNPENGHAHLLYALETPVRTAPDGKMK
                     PLRYAAAVENALRKKLEADEGYSGLICKNPNHGHWKIAVWQPELYTLDWLADSLDLSAA
                     NDKEIVADYGLGRNCTLFDKTRKWAYRAIRQGWPEYEQWLQACYERASAYNLQFSSPLD
                     ENEVNGIAKSIAKWTHSNFDEASFKKYVEDTHSSYIQSLRGKKSRGGGRKKMPEDKILA
                     IKEMVSEGMSYREISKLENVSIGFISKHCK"
                     /name="replicase"
ORIGIN
        1 cgcatgaaag taaaacttat tttattgata gatcggagaa acaagccttt tcggacatta
       61 aagaactcat caatagcgtc taatgggaag gttgtttatg aaccctttta tcgaaggtgt
      121 tcataaacaa cctatatcag ataacagccc tctctagcag agggcttttt tttgcagcca
      181 gcacagaacc tgacatactg cactaccctt taagccagta cacacggagt cccctctggc
      241 gagggtccac cgtgactggt tcaggggatt gcatcccccg aaacccccgt gagaatggtg
      301 cgaatctttt gcgaattatt cccacattca ctgcgaatat tctcaccgtg attagccggt
      361 aacgctcgcc gcagtctcat gaccgaacgg agtgagcgaa tgagcgagga agcggaaaac
      421 catcagaacg tacagtaagc actgtcgcgc cggggccttc atgaacaaac aacaaaagac
      481 agccgttaac atggctaaat tcatccaggc tcagtccctg cttcttctgg acaggcttaa
      541 tgacctggat ctggatcatg aggctgattt ctgcgagaaa ctccatgagg atgcggaacg
      601 cctttaccga agcctgtcag cgcgcctgaa tgagcagcag gacggtgcgt aatgtctccg
      661 ttctaagtat taccggagta ataccggcat cgccttaatt ttcattgtgt tagcgcttaa
      721 cattattacc ccggtaatac ccagaatccc tgtatttttt cttttttatt tatttttcat
      781 gaagttgcga tgaaaatcgc agctgcgtta ggtgtatgac cattttgagg ttgaaaaata
      841 atcaatcatg gcgggtgatt tacgcaggtt aagggtagat cgtgacaaaa aaagcgttcc
      901 tcactgtatc gttcatgcct gcatgaacgg attatttttc cggactacag gtaaactaca
      961 ggaagactac aaaagttgat gacttaatcc tgatttttag tgcgatgact acagataaac
     1021 tacaaaataa ctacaggatt acctcagatc cgttctctga accattcgta catccgaccc
     1081 ccttaccggt tttacactga gcactgatgc tctgaggtcc cttatgacga aacaacagaa
     1141 aacagcgctg aacatggcta aattcatcca gaatcagtct ctgctcctgc tggagaagct
     1201 taacgagctt gatctcgatg ctgaggccga cctttgtgag aaactccacg atgatgcgga
     1261 gcatcttttc cgtacactgt cctcgagact ggatgaatta ctggatggta actgatggcc
     1321 agagtgtcta ttagtgaagc agcacggctt gttaaggtta gtcgccctac tatttacaag
     1381 atgattaaca gtggtaagtt aagttacacc tctgttgtaa agcacgggaa gagtattaaa
     1441 gttattgata catcagagct tattagggtg tttggttctc ttgatggtgt catcgatgat
     1501 gtaaaaagtg acgcagaatc tacaggtatt aacagcgttg gtttacatga tttacaacat
     1561 agaatcgctt tacttgaagc tgaaaacgat ggtcttaaag gggctgttaa ggctcgagat
     1621 gagcatattg attcccttcg tcaggctatg cagcttctgg agcacaagca cgaaccttct
     1681 tcaccacccc attccccgtg gtggaaattc tggaaaaaat cctgatcccg ccatgcttga
     1741 gttttcctct ccggccatcc cggggcgttc ctgaaccttc ccaaaaatcg ccagatccgg
     1801 gaacactcct caccacgaaa aatacccaca caccacgcaa aattaaaatt ttgcagataa
     1861 ctccttatta tcagttggtt aggttttatt aaattacgca gtattacctt ctgtaaggtc
     1921 aatccaagtc gtcggtgatt cgtgtacgac ttaccgacga ctcgtcatag agtcatcgac
     1981 gactcactcc acactatcag taacttatga cgacttgact ctagagtcga atcgtcgctt
     2041 tggcgttttt ttgaccgtgg tgactctaga gtcaagtcac gagtcgaatc gccggtgaat
     2101 cgtgtggtga gtcgtccggc gtcttgccat aacgtgattg ccggccgtcg acgaacccga
     2161 ttcctgaacg tgctgaaaac cggttttccg gctgcgccgg caacgcttca cggccacgca
     2221 ataaattgcg tccccgttca ccgttttcgg gtaagaagaa catcggaaac aggacttacc
     2281 ccggctgaat ggcgtgaatt tccgcgctat gcacttgcgc gcatactcat gcatgccgta
     2341 aaaacagagc ctgcgcgttt ctggcgggtt ttcgggtggt ttgctgcctg ttttgccggt
     2401 ttcccgtcag aaacgcgctg agggcgcctg aggcggtgct gataacagat gttatggtaa
     2461 atcgggggga ggtcgacaag tgcctgaact gggtgtagtt ttaaccccag aaagcaaacg
     2521 cccccgaaat cgtgcaatca acttggcgga agatcacgat aacgagggcg caggactaaa
     2581 ttcctaagaa ggatactagc acatgcaccc agcaagacaa cagcccgcca taagttcagg
     2641 cgtgagtgac taagcccccc ctcgatcttt ttaacgaccg tctcccaaac aaaccgtact
     2701 tctcggacga tttgcacttc ggcgtgcgca tcgccgggaa agagcgcgcg atcctggcga
     2761 aatacatcca gttcaaccag ccgcacgcca tgttctggct gggattcgac gtcgatcgca
     2821 ccggtgcggc catcgactgg agcgaccgga acgcgcctgc gcccacgctg accatcacca
     2881 acccggaaaa cggacatgcg cacctgctgt acgcgctgga aaccccggta cgcaccgctc
     2941 ctgacggaaa aatgaagccg ctgcgctacg ccgccgccgt ggagaacgcg ctgcgtaaaa
     3001 aattagaggc tgacgagggg tattcgggac taatctgcaa aaatccgaac cacggccact
     3061 ggaaaatcgc cgtgtggcag ccggaactct acacgctgga ctggctggcc gactcgctcg
     3121 acctgagtgc cgcgaacgac aaagaaatcg tcgccgacta tggtttaggc cgtaactgca
     3181 ctctgttcga taaaacccgc aagtgggcat accgggcgat ccgccagggc tggccggagt
     3241 atgagcagtg gctgcaagcc tgctatgaac gtgccagtgc ctacaatctg caattttcga
     3301 gccctcttga tgaaaatgag gtgaacggta ttgcgaaaag tattgctaaa tggactcata
     3361 gtaattttga tgaagcttca tttaagaagt atgtggaaga tacacacagt agttacattc
     3421 aatcattaag aggaaaaaag agtcgtggag gggggcggaa gaaaatgcca gaagataaga
     3481 ttcttgcaat aaaagagatg gtttctgaag gcatgtctta tagagagatc tccaaattag
     3541 aaaatgtatc catagggttt attagcaaac attgcaaatg aaataaattg gtgatttatg
     3601 cgttacgtaa agatttccct ttcagtagct acttttttat tgttttggta tgtctctagc
     3661 tttttcacag ggtgttctga tggctggggt tcttcatcca tagggttgag aggagcgtgt
     3721 tcatatcatg gcggcgttag taagctacct ataatcatta tctttttggg cctcatcgct
     3781 agtttttttg ttttttttct tttccctgat agtgaaagtg ctactagcaa aaaggatact
     3841 ttccctgttg taaacaagga aagtaatgag tctattccaa aaataaaaac caatacgcat
     3901 aacgaaataa aagttaagcg cgaattgaaa atagaaatag agaatttaaa cgataagaaa
     3961 ttctctaaaa tatttattta ttctgatggt ctttttatta aagagttcaa tcctgaaaat
     4021 aaaatgaagg tgagtaccaa aaggattaat aaaaataaaa tattaaaaat aagtaatctt
     4081 cttcgtgaag ggaagggggg ggctataaat cccattctcg atgtggaagc aaaagggtat
     4141 cttgtgcgtt tgttcgaaaa tcatg
//
