LOCUS       CP052398                2058 bp    DNA     circular BCT 04-MAY-2020
DEFINITION  Klebsiella pneumoniae strain C17KP0040 plasmid pC17KP0040-5,
            complete sequence.
ACCESSION   CP052398
VERSION     CP052398.1
DBLINK      BioProject: PRJNA625837
            BioSample: SAMN14609902
KEYWORDS    .
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 2058)
  AUTHORS   Yoon,E.-J., Gwon,B., Liu,C., Kim,D., Won,D., Park,S.G., Choi,J.R.
            and Jeong,S.H.
  TITLE     Built-in CTX-M extended-spectrum beta-lactamase gene in Klebsiella
            pneumoniae ensuring stable propagation of the multidrug-resistant
            pathogen in clinical settings
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2058)
  AUTHORS   Yoon,E.-J., Gwon,B., Liu,C., Kim,D., Won,D., Park,S.G., Choi,J.R.
            and Jeong,S.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-APR-2020) Research Institute of Bacterial Resistance,
            Yonsei University College of Medicine, 211, Eonjuro, Gangnam-Gu,
            Seoul 06273, Korea, Republic of
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: SPAdes v. 3.13.1
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 100x
            Sequencing Technology             :: Oxford Nanopore and Illumina
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 04/27/2020 20:54:21
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
            Genes (total)                     :: 5,596
            CDSs (total)                      :: 5,473
            Genes (coding)                    :: 5,343
            CDSs (with protein)               :: 5,343
            Genes (RNA)                       :: 123
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 11
            Pseudo Genes (total)              :: 130
            CDSs (without protein)            :: 130
            Pseudo Genes (ambiguous residues) :: 0 of 130
            Pseudo Genes (frameshifted)       :: 62 of 130
            Pseudo Genes (incomplete)         :: 59 of 130
            Pseudo Genes (internal stop)      :: 23 of 130
            Pseudo Genes (multiple problems)  :: 14 of 130
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..2058
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="C17KP0040"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="pC17KP0040-5"
                     /geo_loc_name="South Korea: Gangwon"
                     /lat_lon="37.82 N 128.16 E"
                     /collection_date="2017"
                     /collected_by="Kor-GLASS"
     gene            complement(join(1874..2058,1..7))
                     /locus_tag="HJX14_27975"
     CDS             complement(join(1874..2058,1..7))
                     /locus_tag="HJX14_27975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020324555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="QJK31475.1"
                     /translation="MIVRLDNRLFEILDEMGAHVDREMFMAAYAQRKAEKENDPRHIRQ
                     RKLTRLAHDLMSESDPEL"
                     /name="hypothetical protein"
     gene            complement(561..1550)
                     /locus_tag="HJX14_27980"
     CDS             complement(561..1550)
                     /locus_tag="HJX14_27980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020240588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="QJK31474.1"
                     /translation="MQNPELQNLTDYSPSDAPWDAHRSVSDDVGGIYLLAAEYERYGAR
                     MASCGGLLRFGWSTLKETGETRLRLREAHFCRVRHCPVCQWRRSLMWQARFYQSLPRIV
                     ADYPDSRWMFLTLTVRNCAIEELGETLSRMNTAFQRLKDRKEFRPVQGWIRTTEVTRGS
                     DGSAHPHFHTLMMVPPGMLNGKSYVRHERWVELWRECLRVSYDPNVDVRAVKPRKPKDG
                     ESLACATAELVRGAVAETLKYSTKPADMVADPKWFLELTRQTHKRRFVATGGALKDVLK
                     LDQETDADMVIGDDISEGDDDGSRIAFEWKTEVKKYRRSPTKDKTESD"
                     /name="protein rep"
     Typing          644..835
                     /name="ColpVC"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="98.446"
                     /coverage="100.0"
                     /evalue="2.86e-91"
ORIGIN
        1 cgatcatgcc taccccctca aaaaacgctt atcaggtggt tgcgctcact gcgtgatcac
       61 aaccaccccc tgtaagtatt ttacgggtgc tgtcgtcaat cactaaatcg gaacccactg
      121 gcaagccagc gggaccccgc gatttagcgt ttgacgattt cgggaacggc gaacgctgac
      181 agattttaat ctggcggcgt gaggtgttgg cagggtgtcg gggcgcagcc ctgacggatc
      241 gtttttggta ccggcatcgt gatggcggta ctccaaaaac acatcttgtc cgttatcagt
      301 ttttgttttt cgtgggcttg ccccaccgcg cgtttctcat cgccagatga gaaactacta
      361 agcgcgcctt ccggaaaatt accggaagaa aaacccaggt tcggaatccg aactcagtaa
      421 tcgagtgacg tcactttgcg gcgttagccc tatcctgcat cggagtaaaa tcaatcggac
      481 aagatgtgac tttggtacac cgccaccaag gtgacggatg cccaaagccc tcatggtcag
      541 ggcgcagccc cgacaccctg ttagtctgat tcggttttat ctttcgtcgg cgaacgccgg
      601 tactttttga cctcggtctt ccactcgaac gcgatgcggg aaccgtcatc atcgccctcg
      661 gaaatatcat ccccgatcac catgtcggcg tcggtttcct gatcgagttt cagcacgtct
      721 ttgagtgcgc cgccggtcgc cacaaagcgg cgcttgtgcg tctggcgggt cagttcgagg
      781 aaccatttag gatcggccac catgtcggcc ggcttcgtgg aatatttcag ggtttcggcc
      841 actgcgccgc gcaccagttc ggcggtcgcg caggccagcg attcgccgtc cttcggcttg
      901 cggggtttca ctgcccggac atcgacattc ggatcgtaac tgacccgcag gcactcacgc
      961 cacagctcaa cccagcgttc atgcctgacg taactcttcc cgttaagcat gcccggcgga
     1021 accatcatca gggtgtggaa gtgcgggtgt gcgctgccgt cactgccgcg ggtgacttcc
     1081 gtggtgcgta tccagccctg aactggtcgg aactctttac ggtccttcag tcgctggaaa
     1141 gccgtgttca tccggctcag cgtctcgccc agctcctcga tcgcgcagtt gcgcacggtc
     1201 agggtcagaa acatccagcg ggaatcgggg taatccgcca cgatacgcgg cagggactgg
     1261 tagaaacggg cttgccacat cagggagcgc ctccactggc agacaggaca gtgccggaca
     1321 cggcagaaat gcgcctcacg cagcctcagg cgcgtttctc cggtttcttt gagggtagac
     1381 cacccaaacc tcagtaaacc gccacaggag gccatacgcg ccccgtagcg ctcatattca
     1441 gccgcaagca ggtaaatccc tcccacgtcg tcagaaacgc ttctgtgagc gtcccacggc
     1501 gcatctgagg gggagtagtc agttaggttc tggagttcag gattttgcat gcacaccgcc
     1561 ccatgctggg cgatggctca tttgacgtgt tatcattgcc atatcacctg tgttgtcgtg
     1621 tccaaattcg aattcctaca ggtggtcaca cccccgaact gttagcgcag ttgcgggggt
     1681 cgcttttttc tgcgaccact cccgacagaa tacttccaaa accattttca ggcaaataac
     1741 actcaaaccc ttgcggcaca agggctggcg gcgttttttg acgccagagt tatcccttaa
     1801 gtataaatac aaggatcgcg cgcacgagac tccggccatt ttctgaccga tttccctcgc
     1861 gcgcacgcga ggctcacaat tcagggtccg attctgacat caaatcatga gccaacctgg
     1921 tcagtttccg ttgacggata tgccggggat cattttcttt ttcggccttc cgctgcgcat
     1981 aggccgccat gaacatttcc cgatccacat gcgcacccat ctcatcgaga atctcaaaca
     2041 gccggttatc cagtctga
//
