LOCUS       CP052343                2073 bp    DNA     circular BCT 04-MAY-2020
DEFINITION  Klebsiella pneumoniae strain D17KP0018 plasmid pD17KP0018-6,
            complete sequence.
ACCESSION   CP052343
VERSION     CP052343.1
DBLINK      BioProject: PRJNA625837
            BioSample: SAMN14609916
KEYWORDS    .
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 2073)
  AUTHORS   Yoon,E.-J., Gwon,B., Liu,C., Kim,D., Won,D., Park,S.G., Choi,J.R.
            and Jeong,S.H.
  TITLE     Built-in CTX-M extended-spectrum beta-lactamase gene in Klebsiella
            pneumoniae ensuring stable propagation of the multidrug-resistant
            pathogen in clinical settings
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2073)
  AUTHORS   Yoon,E.-J., Gwon,B., Liu,C., Kim,D., Won,D., Park,S.G., Choi,J.R.
            and Jeong,S.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-APR-2020) Research Institute of Bacterial Resistance,
            Yonsei University College of Medicine, 211, Eonjuro, Gangnam-Gu,
            Seoul 06273, Korea, Republic of
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: SPAdes v. 3.13.1
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 100x
            Sequencing Technology             :: Oxford Nanopore and Illumina
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 04/27/2020 20:48:11
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
            Genes (total)                     :: 5,860
            CDSs (total)                      :: 5,736
            Genes (coding)                    :: 5,599
            CDSs (with protein)               :: 5,599
            Genes (RNA)                       :: 124
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 13
            Pseudo Genes (total)              :: 137
            CDSs (without protein)            :: 137
            Pseudo Genes (ambiguous residues) :: 0 of 137
            Pseudo Genes (frameshifted)       :: 63 of 137
            Pseudo Genes (incomplete)         :: 64 of 137
            Pseudo Genes (internal stop)      :: 30 of 137
            Pseudo Genes (multiple problems)  :: 19 of 137
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..2073
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="D17KP0018"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="pD17KP0018-6"
                     /geo_loc_name="South Korea: Chungbuk"
                     /lat_lon="36.80 N 127.70 E"
                     /collection_date="2017"
                     /collected_by="Kor-GLASS"
     gene            complement(join(1981..2073,1..267))
                     /locus_tag="HJX28_29290"
     CDS             complement(join(1981..2073,1..267))
                     /locus_tag="HJX28_29290"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="QJK26132.1"
                     /translation="MEAVEIGVGQQLKDPYSAKYTHGSYMFEGRSGGVYCGKVNAKNSY
                     GAYIGDRLFAVVFIDTKSDGLLAVPVGSMDSQEAISSLCASSGYDLRVNKIFKDDVNKE
                     RARKGFSKLDDAYFY"
                     /name="hypothetical protein"
     gene            206..403
                     /locus_tag="HJX28_29295"
     CDS             206..403
                     /locus_tag="HJX28_29295"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="QJK26130.1"
                     /translation="MYFAEYGSLSCWPTPISTASTSSLVSSLADKTEEKKQEKQKTKNK
                     KQKKVTGFTFHIKALLCCPE"
                     /name="hypothetical protein"
     gene            complement(625..861)
                     /locus_tag="HJX28_29300"
     CDS             complement(625..861)
                     /locus_tag="HJX28_29300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001676031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="QJK26131.1"
                     /translation="MKRLINLTPAEKRFLDDAVAAAERASGKKLNQPNRHIVLNRARAQ
                     IESQRQAERQRSAREEERQQAEFTWSRPRAPRR"
                     /name="hypothetical protein"
     Typing          complement(1097..1270)
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="86.857"
                     /coverage="100.0"
                     /evalue="5.819999999999998e-48"
     Typing          1251..1800
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="88.427"
                     /coverage="91.0"
                     /evalue="0.0"
ORIGIN
        1 ataaccagaa gatgcacaaa gagatgaaat agcctcttgg ctatccatac tgccaactgg
       61 tacggctaac agtccatctg atttagtatc aataaagact actgcaaaca aacggtctcc
      121 aatgtatgca ccataagaat ttttcgcatt aaccttccca caatacacac ccccgctacg
      181 cccttcgaac atataggagc catgagtgta ttttgcagag tatggatctt tgagctgctg
      241 gcctactcca atttcaacgg cctccacctc ctctttggtc agctccctcg cagataaaac
      301 tgaggaaaaa aaacaggaaa aacaaaaaac aaaaaacaaa aaacaaaaaa aagtgactgg
      361 ttttaccttt cacattaaag ccctactatg ttgtccagaa taaatcagca tacacagcct
      421 tatttaccat aacaccgcat tacgcgcacc gcgaaaacgg cctcagagcg tttctgcgcc
      481 ttcagccaca aaagagcacg tcttaccccc agaaaaccgc ccggaatcgc tctggtgagt
      541 tttacggggg tgaatgacta tgcaccggag tgaataccac gctgtttcgc ccagaactcc
      601 ccacgaaacc gacgaaagtg gcaatcagcg acgcggcgcc cgcggacgcg accaagtaaa
      661 ttccgcctgc tgccgctcct cctcacgcgc agatcgctgc cgttctgcct ggcgctgcga
      721 ttcgatctgt gcacgagccc tgttaaggac aatgtgcctg ttgggctgat tcagcttctt
      781 acctgacgct ctctcagcgg cggcaacagc atcgtcgaga aatcttttct cggcgggcgt
      841 caggtttatc agtcgtttca tggcgttctc cggtcagaat aactctgcac agtctgccag
      901 acacggcgaa cctcatgaag aacctgcagc cgggaacggc cctgagaaac ggtgaacggg
      961 aacggatttt aatccggtgc cgtgaagcgt tggcggggta tcggggcgca gccctgagat
     1021 atcattttgg tgccggcatc gtgatggcgg tactccaaaa acacatcttg tcccgctttc
     1081 agtttctgaa tttgcgggtt ccgggtgcag cgccggacca gtcacgtagc gctagcggag
     1141 tgtatactgg cttactatgt cggcacgaat aagggtgtca gagaagtgat tcatatgacg
     1201 ggaggaaaaa ggcggcaacg gcgcgtaagc agagtatgcg ataccggaga tatgccgctt
     1261 cctcgctcac tgactcgctg cgctcggtcg ttcggctgcg gcgagcggtg cggacttaca
     1321 aacagggcgg aaatttcctg gtagatgcca ggaaggaacg taacagggaa accatgacgc
     1381 cgcggcaaag ccgtttttcc ataggctccg cccccctgat gagcatcaca gaatctgaca
     1441 ctcaaatcag tggtggcgaa acccgacagg actataaaga tcccaggcgt ttccccctgg
     1501 tagctccctc atgcgctctc ctgttcctgc ctttcggttt accggtgtca ttccgctgtt
     1561 atggccgcgt ttgtctcatt ccacgcctga cactcagttc cgggtaggca gttcgctccg
     1621 agctgggcta tatgcacgaa ccccccgttt agcccgactg ccacgccctg taaggtaact
     1681 aatctcttga gtccaaccct tacggacacg atacatcgcc actggcggca gccattggta
     1741 acgggtgtac aagatattac tgatgcagag ttcttgaagt taaagcctta ctgcggctaa
     1801 actagaagga caaattaggt tgcagtggtc ttgttcaccc tgttaccacg gttcagaaga
     1861 gttacagctc aactgatcca tcgaaagagc caccttacag ggtggctttt tcaattcaat
     1921 gggtaaatta cgccaacaat taggattcag tcaatttttt actactcagt aagctgctag
     1981 ctaatagaaa taagcatcat ccagcttaga aaaacccttc cgtgctcgct ctttattcac
     2041 atcatcttta aatattttat tcactctaag atc
//
