LOCUS       CP052314                2058 bp    DNA     circular BCT 04-MAY-2020
DEFINITION  Klebsiella pneumoniae strain E16KP0102 plasmid pE16KP0102-5,
            complete sequence.
ACCESSION   CP052314
VERSION     CP052314.1
DBLINK      BioProject: PRJNA625837
            BioSample: SAMN14609923
KEYWORDS    .
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 2058)
  AUTHORS   Yoon,E.-J., Gwon,B., Liu,C., Kim,D., Won,D., Park,S.G., Choi,J.R.
            and Jeong,S.H.
  TITLE     Built-in CTX-M extended-spectrum beta-lactamase gene in Klebsiella
            pneumoniae ensuring stable propagation of the multidrug-resistant
            pathogen in clinical settings
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2058)
  AUTHORS   Yoon,E.-J., Gwon,B., Liu,C., Kim,D., Won,D., Park,S.G., Choi,J.R.
            and Jeong,S.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-APR-2020) Research Institute of Bacterial Resistance,
            Yonsei University College of Medicine, 211, Eonjuro, Gangnam-Gu,
            Seoul 06273, Korea, Republic of
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: SPAdes v. 3.13.1
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 100x
            Sequencing Technology             :: Oxford Nanopore and Illumina
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 04/27/2020 20:56:43
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
            Genes (total)                     :: 5,786
            CDSs (total)                      :: 5,662
            Genes (coding)                    :: 5,512
            CDSs (with protein)               :: 5,512
            Genes (RNA)                       :: 124
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 10
            Pseudo Genes (total)              :: 150
            CDSs (without protein)            :: 150
            Pseudo Genes (ambiguous residues) :: 0 of 150
            Pseudo Genes (frameshifted)       :: 68 of 150
            Pseudo Genes (incomplete)         :: 77 of 150
            Pseudo Genes (internal stop)      :: 27 of 150
            Pseudo Genes (multiple problems)  :: 20 of 150
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..2058
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="E16KP0102"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="pE16KP0102-5"
                     /geo_loc_name="South Korea: Jeonnam"
                     /lat_lon="34.87 N 126.99 E"
                     /collection_date="2016"
                     /collected_by="Kor-GLASS"
     gene            join(1641..2058,1..572)
                     /locus_tag="HJX35_28925"
     CDS             join(1641..2058,1..572)
                     /locus_tag="HJX35_28925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020240588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="QJP02688.1"
                     /translation="MQNPELQNLTDYSPSDAPWDAHRSVSDDVGGIYLLAAEYERYGAR
                     MASCGGLLRFGWSTLKETGETRLRLREAHFCRVRHCPVCQWRRSLMWQARFYQSLPRIV
                     ADYPDSRWMFLTLTVRNCAIEELGETLSRMNTAFQRLKDRKEFRPVQGWIRTTEVTRGS
                     DGSAHPHFHTLMMVPPGMLNGKSYVRHERWVELWRECLRVSYDPNVDVRAVKPRKPKDG
                     ESLACATAELVRGAVAETLKYSTKPADMVADPKWFLELTRQTHKRRFVATGGALKDVLK
                     LDQETDADMVIGDDISEGDDDGSRIAFEWKTEVKKYRRSPTKDKTESD"
                     /name="protein rep"
     gene            1126..1317
                     /locus_tag="HJX35_28930"
     CDS             1126..1317
                     /locus_tag="HJX35_28930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020324555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="QJP02689.1"
                     /translation="MIVRLDNRLFEILDEMGAHVDREMFMAAYAQRKAEKENDPRHIRQ
                     RKLTRLAHDLMSESDPEL"
                     /name="hypothetical protein"
     Typing          complement(299..490)
                     /name="ColpVC"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="98.446"
                     /coverage="100.0"
                     /evalue="2.86e-91"
ORIGIN
        1 gactgaagga ccgtaaagag ttccgaccag ttcagggctg gatacgcacc acggaagtca
       61 cccgcggcag tgacggcagc gcacacccgc acttccacac cctgatgatg gttccgccgg
      121 gcatgcttaa cgggaagagt tacgtcaggc atgaacgctg ggttgagctg tggcgtgagt
      181 gcctgcgggt cagttacgat ccgaatgtcg atgtccgggc agtgaaaccc cgcaagccga
      241 aggacggcga atcgctggcc tgcgcgaccg ccgaactggt gcgcggcgca gtggccgaaa
      301 ccctgaaata ttccacgaag ccggccgaca tggtggccga tcctaaatgg ttcctcgaac
      361 tgacccgcca gacgcacaag cgccgctttg tggcgaccgg cggcgcactc aaagacgtgc
      421 tgaaactcga tcaggaaacc gacgccgaca tggtgatcgg ggatgatatt tccgagggcg
      481 atgatgacgg ttcccgcatc gcgttcgagt ggaagaccga ggtcaaaaag taccggcgtt
      541 cgccgacgaa agataaaacc gaatcagact aacagggtgt cggggctgcg ccctgaccat
      601 gagggctttg ggcatccgtc accttggtgg cggtgtacca aagtcacatc ttgtccgatt
      661 gattttactc cgatgcagga tagggctaac gccgcaaagt gacgtcactc gattactgag
      721 ttcggattcc gaacctgggt ttttcttccg gtaattttcc ggaaggcgcg cttagtagtt
      781 tctcatctgg cgatgagaaa cgcgcggtgg ggcaagccca cgaaaaacaa aaactgataa
      841 cggacaagat gtgtttttgg agtaccgcca tcacgatgcc ggtaccaaaa acgatccgtc
      901 agggctgcgc cccgacaccc tgccaacacc tcacgccgcc agattaaaat ctgtcagcgt
      961 tcgccgttcc cgaaatcgtc aaacgctaaa tcgcggggtc ccgctggctt gccagtgggt
     1021 tccgatttag tgattgacga cagcacccgt aaaatactta cagggggtgg ttgtgatcac
     1081 gcagtgagcg caaccacctg ataagcgttt tttgaggggg taggcatgat cgtcagactg
     1141 gataaccggc tgtttgagat tctcgatgag atgggtgcgc atgtggatcg ggaaatgttc
     1201 atggcggcct atgcgcagcg gaaggccgaa aaagaaaatg atccccggca tatccgtcaa
     1261 cggaaactga ccaggttggc tcatgatttg atgtcagaat cggaccctga attgtgagcc
     1321 tcgcgtgcgc gcgagggaaa tcggtcagaa aatggccgga gtctcgtgcg cgcgatcctt
     1381 gtatttatac ttaagggata actctggcgt caaaaaacgc cgccagccct tgtgccgcaa
     1441 gggtttgagt gttatttgcc tgaaaatggt tttggaagta ttctgtcggg agtggtcgca
     1501 gaaaaaagcg acccccgcaa ctgcgctaac agttcggggg tgtgaccacc tgtaggaatt
     1561 cgaatttgga cacgacaaca caggtgatat ggcaatgata acacgtcaaa tgagccatcg
     1621 cccagcatgg ggcggtgtgc atgcaaaatc ctgaactcca gaacctaact gactactccc
     1681 cctcagatgc gccgtgggac gctcacagaa gcgtttctga cgacgtggga gggatttacc
     1741 tgcttgcggc tgaatatgag cgctacgggg cgcgtatggc ctcctgtggc ggtttactga
     1801 ggtttgggtg gtctaccctc aaagaaaccg gagaaacgcg cctgaggctg cgtgaggcgc
     1861 atttctgccg tgtccggcac tgtcctgtct gccagtggag gcgctccctg atgtggcaag
     1921 cccgtttcta ccagtccctg ccgcgtatcg tggcggatta ccccgattcc cgctggatgt
     1981 ttctgaccct gaccgtgcgc aactgcgcga tcgaggagct gggcgagacg ctgagccgga
     2041 tgaacacggc tttccagc
//
