LOCUS       CP052285                2058 bp    DNA     circular BCT 04-MAY-2020
DEFINITION  Klebsiella pneumoniae strain E16KP0224 plasmid pE16KP0224-5,
            complete sequence.
ACCESSION   CP052285
VERSION     CP052285.1
DBLINK      BioProject: PRJNA625837
            BioSample: SAMN14609933
KEYWORDS    .
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 2058)
  AUTHORS   Yoon,E.-J., Gwon,B., Liu,C., Kim,D., Won,D., Park,S.G., Choi,J.R.
            and Jeong,S.H.
  TITLE     Built-in CTX-M extended-spectrum beta-lactamase gene in Klebsiella
            pneumoniae ensuring stable propagation of the multidrug-resistant
            pathogen in clinical settings
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2058)
  AUTHORS   Yoon,E.-J., Gwon,B., Liu,C., Kim,D., Won,D., Park,S.G., Choi,J.R.
            and Jeong,S.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-APR-2020) Research Institute of Bacterial Resistance,
            Yonsei University College of Medicine, 211, Eonjuro, Gangnam-Gu,
            Seoul 06273, Korea, Republic of
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: SPAdes v. 3.13.1
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 100x
            Sequencing Technology             :: Oxford Nanopore and Illumina
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 04/27/2020 20:38:58
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
            Genes (total)                     :: 5,501
            CDSs (total)                      :: 5,375
            Genes (coding)                    :: 5,239
            CDSs (with protein)               :: 5,239
            Genes (RNA)                       :: 126
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 136
            CDSs (without protein)            :: 136
            Pseudo Genes (ambiguous residues) :: 0 of 136
            Pseudo Genes (frameshifted)       :: 69 of 136
            Pseudo Genes (incomplete)         :: 63 of 136
            Pseudo Genes (internal stop)      :: 23 of 136
            Pseudo Genes (multiple problems)  :: 18 of 136
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..2058
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="E16KP0224"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="pE16KP0224-5"
                     /geo_loc_name="South Korea: Jeonnam"
                     /lat_lon="34.87 N 126.99 E"
                     /collection_date="2016"
                     /collected_by="Kor-GLASS"
     gene            complement(join(1615..2058,1..546))
                     /locus_tag="HJX45_27500"
     CDS             complement(join(1615..2058,1..546))
                     /locus_tag="HJX45_27500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020240588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="QJJ62195.1"
                     /translation="MQNPELQNLTDYSPSDAPWDAHRSVSDDVGGIYLLAAEYERYGAR
                     MASCGGLLRFGWSTLKETGETRLRLREAHFCRVRHCPVCQWRRSLMWQARFYQSLPRIV
                     ADYPDSRWMFLTLTVRNCAIEELGETLSRMNTAFQRLKDRKEFRPVQGWIRTTEVTRGS
                     DGSAHPHFHTLMMVPPGMLNGKSYVRHERWVELWRECLRVSYDPNVDVRAVKPRKPKDG
                     ESLACATAELVRGAVAETLKYSTKPADMVADPKWFLELTRQTHKRRFVATGGALKDVLK
                     LDQETDADMVIGDDISEGDDDGSRIAFEWKTEVKKYRRSPTKDKTESD"
                     /name="protein rep"
     gene            complement(870..1061)
                     /locus_tag="HJX45_27505"
     CDS             complement(870..1061)
                     /locus_tag="HJX45_27505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020324555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="QJJ62194.1"
                     /translation="MIVRLDNRLFEILDEMGAHVDREMFMAAYAQRKAEKENDPRHIRQ
                     RKLTRLAHDLMSESDPEL"
                     /name="hypothetical protein"
     Typing          1698..1889
                     /name="ColpVC"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="98.446"
                     /coverage="100.0"
                     /evalue="2.86e-91"
ORIGIN
        1 aagcatgccc ggcggaacca tcatcagggt gtggaagtgc gggtgtgcgc tgccgtcact
       61 gccgcgggtg acttccgtgg tgcgtatcca gccctgaact ggtcggaact ctttacggtc
      121 cttcagtcgc tggaaagccg tgttcatccg gctcagcgtc tcgcccagct cctcgatcgc
      181 gcagttgcgc acggtcaggg tcagaaacat ccagcgggaa tcggggtaat ccgccacgat
      241 acgcggcagg gactggtaga aacgggcttg ccacatcagg gagcgcctcc actggcagac
      301 aggacagtgc cggacacggc agaaatgcgc ctcacgcagc ctcaggcgcg tttctccggt
      361 ttctttgagg gtagaccacc caaacctcag taaaccgcca caggaggcca tacgcgcccc
      421 gtagcgctca tattcagccg caagcaggta aatccctccc acgtcgtcag aaacgcttct
      481 gtgagcgtcc cacggcgcat ctgaggggga gtagtcagtt aggttctgga gttcaggatt
      541 ttgcatgcac accgccccat gctgggcgat ggctcatttg acgtgttatc attgccatat
      601 cacctgtgtt gtcgtgtcca aattcgaatt cctacaggtg gtcacacccc cgaactgtta
      661 gcgcagttgc gggggtcgct tttttctgcg accactcccg acagaatact tccaaaacca
      721 ttttcaggca aataacactc aaacccttgc ggcacaaggg ctggcggcgt tttttgacgc
      781 cagagttatc ccttaagtat aaatacaagg atcgcgcgca cgagactccg gccattttct
      841 gaccgatttc cctcgcgcgc acgcgaggct cacaattcag ggtccgattc tgacatcaaa
      901 tcatgagcca acctggtcag tttccgttga cggatatgcc ggggatcatt ttctttttcg
      961 gccttccgct gcgcataggc cgccatgaac atttcccgat ccacatgcgc acccatctca
     1021 tcgagaatct caaacagccg gttatccagt ctgacgatca tgcctacccc ctcaaaaaac
     1081 gcttatcagg tggttgcgct cactgcgtga tcacaaccac cccctgtaag tattttacgg
     1141 gtgctgtcgt caatcactaa atcggaaccc actggcaagc cagcgggacc ccgcgattta
     1201 gcgtttgacg atttcgggaa cggcgaacgc tgacagattt taatctggcg gcgtgaggtg
     1261 ttggcagggt gtcggggcgc agccctgacg gatcgttttt ggtaccggca tcgtgatggc
     1321 ggtactccaa aaacacatct tgtccgttat cagtttttgt ttttcgtggg cttgccccac
     1381 cgcgcgtttc tcatcgccag atgagaaact actaagcgcg ccttccggaa aattaccgga
     1441 agaaaaaccc aggttcggaa tccgaactca gtaatcgagt gacgtcactt tgcggcgtta
     1501 gccctatcct gcatcggagt aaaatcaatc ggacaagatg tgactttggt acaccgccac
     1561 caaggtgacg gatgcccaaa gccctcatgg tcagggcgca gccccgacac cctgttagtc
     1621 tgattcggtt ttatctttcg tcggcgaacg ccggtacttt ttgacctcgg tcttccactc
     1681 gaacgcgatg cgggaaccgt catcatcgcc ctcggaaata tcatccccga tcaccatgtc
     1741 ggcgtcggtt tcctgatcga gtttcagcac gtctttgagt gcgccgccgg tcgccacaaa
     1801 gcggcgcttg tgcgtctggc gggtcagttc gaggaaccat ttaggatcgg ccaccatgtc
     1861 ggccggcttc gtggaatatt tcagggtttc ggccactgcg ccgcgcacca gttcggcggt
     1921 cgcgcaggcc agcgattcgc cgtccttcgg cttgcggggt ttcactgccc ggacatcgac
     1981 attcggatcg taactgaccc gcaggcactc acgccacagc tcaacccagc gttcatgcct
     2041 gacgtaactc ttcccgtt
//
