LOCUS       CP052212                2088 bp    DNA     circular BCT 04-MAY-2020
DEFINITION  Klebsiella pneumoniae strain E17KP0085 plasmid pE17KP0085-4,
            complete sequence.
ACCESSION   CP052212
VERSION     CP052212.1
DBLINK      BioProject: PRJNA625837
            BioSample: SAMN14609950
KEYWORDS    .
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 2088)
  AUTHORS   Yoon,E.-J., Gwon,B., Liu,C., Kim,D., Won,D., Park,S.G., Choi,J.R.
            and Jeong,S.H.
  TITLE     Built-in CTX-M extended-spectrum beta-lactamase gene in Klebsiella
            pneumoniae ensuring stable propagation of the multidrug-resistant
            pathogen in clinical settings
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2088)
  AUTHORS   Yoon,E.-J., Gwon,B., Liu,C., Kim,D., Won,D., Park,S.G., Choi,J.R.
            and Jeong,S.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-APR-2020) Research Institute of Bacterial Resistance,
            Yonsei University College of Medicine, 211, Eonjuro, Gangnam-Gu,
            Seoul 06273, Korea, Republic of
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: SPAdes v. 3.13.1
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 100x
            Sequencing Technology             :: Oxford Nanopore and Illumina
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 04/27/2020 20:27:26
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
            Genes (total)                     :: 5,614
            CDSs (total)                      :: 5,491
            Genes (coding)                    :: 5,375
            CDSs (with protein)               :: 5,375
            Genes (RNA)                       :: 123
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 116
            CDSs (without protein)            :: 116
            Pseudo Genes (ambiguous residues) :: 0 of 116
            Pseudo Genes (frameshifted)       :: 58 of 116
            Pseudo Genes (incomplete)         :: 54 of 116
            Pseudo Genes (internal stop)      :: 19 of 116
            Pseudo Genes (multiple problems)  :: 12 of 116
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..2088
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="E17KP0085"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="pE17KP0085-4"
                     /geo_loc_name="South Korea: Jeonnam"
                     /lat_lon="34.87 N 126.99 E"
                     /collection_date="2017"
                     /collected_by="Kor-GLASS"
     gene            complement(join(1875..2088,1..53))
                     /locus_tag="HJX62_28065"
     CDS             complement(join(1875..2088,1..53))
                     /locus_tag="HJX62_28065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001024536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="QJO70229.1"
                     /translation="MNINIEYLNGNKTIGLFFLRSEAVIPDRFKNLILLIDGLSFGTFG
                     FHPHEGFEDELILYIQKTNERVKTLFVKIDLNGIKFGFLRTHS"
                     /name="hypothetical protein"
     gene            complement(57..1022)
                     /locus_tag="HJX62_28070"
     CDS             complement(57..1022)
                     /locus_tag="HJX62_28070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012421200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="QJO70228.1"
                     /translation="MSEDKFLSDYSPRDAVWDTQRTLTDSVGGIYQTAAEFERYALRMA
                     SCSGLLRFGWSTIMETGETRLRLRSAQFCRVRHCPVCQWRRTLMWQARFYQALPKIVVD
                     YPSSRWLFLTLTVRNCEIGELGTVLTAMNAAFKRMEKRKELSPVQGWIRATEVTRGKDG
                     SAHPHFHCLLMVQPSWFKGKNYVKHERWVELWRDCLRVNYEPNIDIRAVKTKTGEVVAN
                     VAEQLQSAVAETLKYSVKPEDMANDPEWFLELTRQLHKRRFISTGGALKNVLQLDRETN
                     EDLVIADDVGDGTDDGKRTAFVWDSGKRRYKRAPEKDKSD"
                     /name="protein rep"
     Typing          complement(398..629)
                     /name="Col(BS512)"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="2.05e-118"
ORIGIN
        1 aaaaataaac caatagtctt atttccattc aggtattcaa tattaatatt catacgttaa
       61 tccgatttat ccttctcagg ggcgcgtttg taacgccgtt tacctgaatc ccagacaaac
      121 gccgtccgct tcccgtcatc agtgccatcc cctacatcgt cggcaatgac aagatcctca
      181 ttggtttctc gatccaactg gaggacgttt tttagcgccc caccggtcga gataaaacgg
      241 cgcttgtgaa gctgccgcgt cagctcaaga aaccactcag gatcgtttgc catatcttcc
      301 ggtttaacgg agtatttcag cgtttcagca accgcgcttt gcagttgctc ggcaacgttg
      361 gccacaacct cacctgtctt agtttttact gcccgaatat cgatattcgg ctcatagttc
      421 acccgcaagc aatcgcgcca gagttctacc caacgttcgt gcttaacgta gttcttccct
      481 ttaaaccaag aaggttgcac catcagcaga cagtgaaaat gcggatgtgc gctgccatcc
      541 ttacctcgcg tcacctccgt agccctgatc cacccctgaa caggtgatag ctcctttcgc
      601 ttttccattc gcttaaacgc cgcattcatt gctgtaagga ctgttccaag ttcacctatc
      661 tcgcagttcc tgacagttaa cgtcagaaac aaccatcggg aagacgggta atccacaacg
      721 attttcggta gagcctgata aaaacgggct tgccacatga gggttcttct ccactggcag
      781 acagggcaat gacggacacg gcaaaattgc gcactacgaa gccgtaggcg cgtttctccg
      841 gtttccatga tggtagacca accaaaacgt aacaaaccgc tacaggaggc catacggagt
      901 gcatagcgct cgaattcagc agcagtctgg tagatacccc cgacagaatc ggtaagcgtg
      961 cgctgggtat cccaaactgc atcacggggg ctgtagtccg aaaggaattt atcttctgac
     1021 attaagcctg ctccgatctg ggcaggctgt gatttgatgt ggtatattca tcacgtacct
     1081 gtgcattgcg agccagtaca tgtcaccaga gtttgccgct gaggtgacac attcgaaatg
     1141 ttggggagtg ttgacgcact ccccaacgcc gattaaaaac gcctcaattc tgctccattt
     1201 tctttgacct gtcaaaaccc actcaaagcc tcgtcattac tgggctaaac cactatttca
     1261 tatccgccat ttatccctta agtataaata caaggatcac gcgcgagaat tgcgcaaaaa
     1321 ataaccacaa ttttaacccc caaaacaagc acccccgaac ggcttacccc aaccttttcc
     1381 acacacccga tcaccaaaac agggaataaa aacaaaaccc tgtcttacag gtggatggcc
     1441 tcacttcgtg aaaccatcca ccccgcataa gttttttaat cggtggtgtc gtcaatcact
     1501 aaatcggaac cccaaagggg acccccacga tttagcattt gacgagatta actctcggag
     1561 atggcatcat gcttttaacg gactttaaaa aacggtgaac ggatgcggat tttaatccgt
     1621 gtctgtgagg cgttgagcaa cgagcaaagc gaggcggtag aaagagagcc agcggcaggc
     1681 tcaggacgat aatccgggga aaatgtacca ctcgcagagt gttaacattt gacatcggat
     1741 tgtctatcct gcattggtgt cgagttggca aggctgagga taatgctgag gataatgcag
     1801 gatagacaga gcactagaga ttgcatgcaa tctcgtacct atcacctcag cctgccgctg
     1861 gctcttttcc agaactaaga atgcgttctt aaaaatccaa acttgatacc gtttaaatct
     1921 attttcacaa aaagagtttt taccctctcg tttgttttct gaatatataa aattaattca
     1981 tcctcaaaac cttcgtgcgg atgaaaacca aatgtgccaa aacttaatcc atcaataagc
     2041 aaaataaggt ttttaaacct gtcaggaatc accgcttcac ttcttaaa
//
