LOCUS       CP050749                 536 bp    DNA     circular BCT 06-APR-2020
DEFINITION  Salmonella enterica subsp. enterica serovar Typhimurium strain ST53
            plasmid pST53-4, complete sequence.
ACCESSION   CP050749
VERSION     CP050749.1
DBLINK      BioProject: PRJNA615288
            BioSample: SAMN14450163
KEYWORDS    .
SOURCE      Salmonella enterica subsp. enterica serovar Typhimurium (Salmonella
            typhimurium)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhimurium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 536)
  AUTHORS   Chen,Z.
  TITLE     Genomic analyses of multidrug-resistant Salmonella Indiana,
            Typhimurium, and Enteritidis isolates using MinION and MiSeq
            sequencing technologies
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 536)
  AUTHORS   Chen,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-MAR-2020) Joint Institute for Food Safety and Applied
            Nutrition, University of Maryland, 5145 Campus Drive, Patapsco
            Building, Suite 2134, College Park, MD 20742, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.4.8
            Assembly Name                     :: ST53
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 76x
            Sequencing Technology :: Illumina MiSeq; Oxford Nanopore MiniION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/31/2020 17:46:21
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
            Genes (total)                     :: 5,084
            CDSs (total)                      :: 4,959
            Genes (coding)                    :: 4,813
            CDSs (with protein)               :: 4,813
            Genes (RNA)                       :: 125
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 17
            Pseudo Genes (total)              :: 146
            CDSs (without protein)            :: 146
            Pseudo Genes (ambiguous residues) :: 0 of 146
            Pseudo Genes (frameshifted)       :: 68 of 146
            Pseudo Genes (incomplete)         :: 79 of 146
            Pseudo Genes (internal stop)      :: 26 of 146
            Pseudo Genes (multiple problems)  :: 25 of 146
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..536
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhimurium"
                     /mol_type="genomic DNA"
                     /strain="ST53"
                     /serovar="Typhimurium"
                     /isolation_source="Diarrheal patient"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90371"
                     /plasmid="pST53-4"
                     /geo_loc_name="China:Shanghai"
                     /lat_lon="31.23 N 121.47 E"
                     /collection_date="2011-07-14"
                     /collected_by="Shanghai Municipal Center for Disease
                     Control and Prevention"
     gene            complement(201..449)
                     /locus_tag="HEC88_25420"
     CDS             complement(201..449)
                     /locus_tag="HEC88_25420"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="QIT67222.1"
                     /translation="MFIYASGGNGGSAGGACANTSRLQGYVGGTLISVNASNNPAYGKT
                     AFISFAVPAGTSYQITSYPTENTSCGAGVFSVFGYQT"
                     /name="hypothetical protein"
ORIGIN
        1 gggacaatag gtggaaaact caaagttact cagctttcca ccacaggtta tctggggcaa
       61 ttcgacttct gtgccattgc cagaatgggc aacgcagagg atgcccacta ctgccaggta
      121 gttgagagcc cagcaggttc acgcaaatgg tacaaatacg agcataagac aggttgtatt
      181 gcgtcgtgtg taacgctcaa ttaagtttga tatccaaata ctgaaaatac cccggcacca
      241 catgatgtat tttctgttgg ataggatgtt atctgatagg aagtacctgc aggtacagca
      301 aagctgataa aggctgtttt tccatatgca gggttattgc tggcattcac gctaattagc
      361 gtcccaccaa catatccctg cagtcgggat gtatttgcac atgcacctcc ggcagatcct
      421 ccattacctc cagatgcata aataaacaat gtactgcccc ctgaattcct ccctgagaat
      481 gaacctctat gtgaacctaa gtttgtgtaa gaaccattga gcgaaccaga agtctt
//
