LOCUS       CP049997                2461 bp    DNA     circular BCT 24-SEP-2020
DEFINITION  Staphylococcus aureus strain pt214 plasmid pER05716.3A.4, complete
            sequence.
ACCESSION   CP049997
VERSION     CP049997.1
DBLINK      BioProject: PRJNA470993
            BioSample: SAMN12331031
KEYWORDS    .
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus.
REFERENCE   1  (bases 1 to 2461)
  AUTHORS   Caban,A.B., Pak,T., Kumaresh,A., Dupper,A., Chacko,K.,
            Sullivan,M.J., Altman,D.R. and van Bakel,H.
  TITLE     PathoSPOT genomic surveillance reveals prolonged under the radar
            outbreaks of nosocomial methicillin resistant S. aureus bloodstream
            infections
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2461)
  AUTHORS   Caban,A.B., Pak,T., Kumaresh,A., Dupper,A., Chacko,K.,
            Sullivan,M.J., Altman,D.R. and van Bakel,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-MAR-2020) Genetics and Genomic Sciences, Icahn School
            of Medicine, One Gustave L. Levy Place Box 1498, New York, NY 10029,
            USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: HGAP v. 2.3.0
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 190.163959398137x
            Sequencing Technology             :: PacBio
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/11/2020 12:46:26
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
            Genes (total)                     :: 2,965
            CDSs (total)                      :: 2,883
            Genes (coding)                    :: 2,780
            CDSs (with protein)               :: 2,780
            Genes (RNA)                       :: 82
            rRNAs                             :: 7, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 59
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 103
            CDSs (without protein)            :: 103
            Pseudo Genes (ambiguous residues) :: 0 of 103
            Pseudo Genes (frameshifted)       :: 63 of 103
            Pseudo Genes (incomplete)         :: 31 of 103
            Pseudo Genes (internal stop)      :: 27 of 103
            Pseudo Genes (multiple problems)  :: 18 of 103
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..2461
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /strain="pt214"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /db_xref="taxon:1280"
                     /plasmid="pER05716.3A.4"
                     /geo_loc_name="USA:New York City"
                     /lat_lon="40.7903114 N 73.9528738 W"
                     /collection_date="2016"
                     /collected_by="Mount Sinai Hospital"
     gene            18..2441
                     /locus_tag="FPO77_14360"
                     /pseudo=""
     CDS             18..2441
                     /locus_tag="FPO77_14360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500668.1"
                     /note="frameshifted; incomplete; partial on complete
                     genome; missing N-terminus and C-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan DD-metalloendopeptidase family
                     protein"
                     /name="peptidoglycan DD-metalloendopeptidase family
                     protein"
ORIGIN
        1 ttaactggtc caattgtatc gtgttaggtg tactggctgg tttagcagtc gcatttacaa
       61 tagcttataa gaaatctgaa acattcagaa attttgttaa atggtgcaat taacagtgtt
      121 aaacaaacgt ttagtaattt cattcaattt atccaacctt tcattgattc cgttaaaaac
      181 gtctttaaac aagcggtttc agcaatcgtt gatttcgcta aagatatttg gagtcaaatt
      241 aatggattct ttaatgaaaa cggaattttc tattgttcaa gcgcttcaaa atatatgcaa
      301 ttttatcaaa gctatatttg aatttatctt aaaatttgta attaaaccaa tcatgtttgc
      361 gatttggcaa gtgatgcaat ttatttggcc ggcggttaaa gccttgattg tcagtacttg
      421 ggagaatata aaaggagtaa tacaaggtgc tttaaatatc atacttggct ttatcaagtt
      481 cttttcaagt ttattcactg gtaattggcg aggtgtttgg gacggtattg tgatgatact
      541 aaaaggcact gtgcagttaa tttggaattt aatacaactg tggtttgtag gtaagattct
      601 aggtgttgtt agatactttg gtggattgct taaaggttta atatccggta tctggggtgt
      661 tatcaaaggt atttcacaaa atcattatct gcaatttgga atgcaacgaa aagtattttc
      721 ggtttcttat acaatagtgt taaatctatt ttcactaata tgaaaaactg gttatctagt
      781 acgtggaata atatcaaaag caataccgtc ggcaaggctc attcgttatt tacgggtgta
      841 aggtctaaat tcacaagttt atggaatgcg acgaaagata tatttactaa gttaagaaat
      901 tggatgtcaa acatctggaa ctctattaaa gataacacgg taggtatagc tggtcgtttg
      961 tgggataaag tacgtaatat cttcggaaac atgcgtgacg gtttaaaatc tatcattggt
     1021 aaaattaaag atcatatcgg cggtatggta gatgctatta aaaaaggact taataaatta
     1081 attgaaggct taaactgggt cggtggtaag ttaggtatgg atgaaatacc taggttacac
     1141 actggtacag agcacacaca tactactaca agattagtta agaacggtaa gattgcacgt
     1201 gatacattcg ctacagttgg ggataaagga cgtggaaatg gtccaaatgg ttttagaaat
     1261 gaaatgattg aattccctaa tggtaaacgt gtaatcacac ctaatacaga cactactgct
     1321 tatttaccta aaggctcaaa agtatacaac ggtgcacaaa cttattcaat gttaaacgga
     1381 acgcttccga gatttcattt cggtactact atgtggaaag atattaaatc tagtgcatca
     1441 tcggcattta actggacaaa agatcaaata ggtaaaggta ccaaatggct tggcgataaa
     1501 gttggcgatg ttttagattt tatggaaaat ccaggcaaac ttttaaatta tatacttgaa
     1561 gcttttggaa ttgatttcaa ttctttaact aaaggtatgg gaattgcagg cgacataaca
     1621 aaagctgcat ggtctaagat taagaaaagt gctactgatt ggataaaaga aaatttagaa
     1681 gctatgggcg gtggcgattt agtcggtgga atattagacc ctgacaaaat taattatcat
     1741 tatggacgta ccgcagctta taccgctgca actggaagac catttcatga aggtgtcgat
     1801 tttccatttg tatatcaaga agttagaacg ccgatgggtg gcagacttac aagaatgcca
     1861 tttatgtctg gtggttatgg taattatgta aaaattacta gtggagttat cgatatgcta
     1921 tttgcgcatt tgaaaaactt tagcaaatca ccacctagtg gcacgatggt aaagcccggt
     1981 gatgttgttg gtttaactgg taataccgga tttagtacag gaccacattt acattttgaa
     2041 atgaggagaa atggacgaca ttttgaccct gaaccatatt taaggaatgc taagaaaaaa
     2101 ggtaggttat caattggtgg cggtggcgct acttctggaa gtggtgcaac ttatgccagc
     2161 cgagtaatcc gacaagcaca aagtatttta ggaggacgtt ataaaggtaa gtggattcat
     2221 gaccagatga tgcgagttgc aaagcgcgaa agtaactatc aatcaaatgc agtgaataat
     2281 tgggacatta atgctcaaag aggagacccg tctagagatt attccaaatt atcggctcaa
     2341 cttttagagc taacgctaaa cgagggtaca ctaattataa taatccagta catcaaggta
     2401 tctcagcaat gcagtacatt gttagacgat atggttgggt ggttttaaac gtgctggtga
     2461 t
//
