LOCUS       CP049993                1329 bp    DNA     circular BCT 24-SEP-2020
DEFINITION  Staphylococcus aureus strain pt214 plasmid pER05716.3A.1, complete
            sequence.
ACCESSION   CP049993
VERSION     CP049993.1
DBLINK      BioProject: PRJNA470993
            BioSample: SAMN12331031
KEYWORDS    .
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus.
REFERENCE   1  (bases 1 to 1329)
  AUTHORS   Caban,A.B., Pak,T., Kumaresh,A., Dupper,A., Chacko,K.,
            Sullivan,M.J., Altman,D.R. and van Bakel,H.
  TITLE     PathoSPOT genomic surveillance reveals prolonged under the radar
            outbreaks of nosocomial methicillin resistant S. aureus bloodstream
            infections
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1329)
  AUTHORS   Caban,A.B., Pak,T., Kumaresh,A., Dupper,A., Chacko,K.,
            Sullivan,M.J., Altman,D.R. and van Bakel,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-MAR-2020) Genetics and Genomic Sciences, Icahn School
            of Medicine, One Gustave L. Levy Place Box 1498, New York, NY 10029,
            USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: HGAP v. 2.3.0
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 190.163959398137x
            Sequencing Technology             :: PacBio
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/11/2020 12:46:26
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
            Genes (total)                     :: 2,965
            CDSs (total)                      :: 2,883
            Genes (coding)                    :: 2,780
            CDSs (with protein)               :: 2,780
            Genes (RNA)                       :: 82
            rRNAs                             :: 7, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 59
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 103
            CDSs (without protein)            :: 103
            Pseudo Genes (ambiguous residues) :: 0 of 103
            Pseudo Genes (frameshifted)       :: 63 of 103
            Pseudo Genes (incomplete)         :: 31 of 103
            Pseudo Genes (internal stop)      :: 27 of 103
            Pseudo Genes (multiple problems)  :: 18 of 103
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..1329
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /strain="pt214"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /db_xref="taxon:1280"
                     /plasmid="pER05716.3A.1"
                     /geo_loc_name="USA:New York City"
                     /lat_lon="40.7903114 N 73.9528738 W"
                     /collection_date="2016"
                     /collected_by="Mount Sinai Hospital"
     gene            complement(41..513)
                     /locus_tag="FPO77_00005"
                     /pseudo=""
     CDS             complement(41..513)
                     /locus_tag="FPO77_00005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000582714.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="dUTPase"
                     /name="dUTPase"
     gene            complement(613..720)
                     /locus_tag="FPO77_00010"
     CDS             complement(613..720)
                     /locus_tag="FPO77_00010"
                     /inference="COORDINATES: protein motif:HMM:NF018019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1024 family protein"
                     /protein_id="QOA09550.1"
                     /translation="MLCKIALKEDIYLDEAVGIMTGQVVYKYEEEQEND"
                     /name="DUF1024 family protein"
     gene            complement(680..869)
                     /locus_tag="FPO77_00015"
                     /pseudo=""
     CDS             complement(680..869)
                     /locus_tag="FPO77_00015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001802881.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1024 family protein"
                     /name="DUF1024 family protein"
     gene            complement(853..1244)
                     /locus_tag="FPO77_00020"
                     /pseudo=""
     CDS             complement(853..1244)
                     /locus_tag="FPO77_00020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000219084.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="acetyltransferase"
                     /name="acetyltransferase"
ORIGIN
        1 cgtcctgttg aatctttgaa tgttgtgact aagtattgtg tcacttcccc aaaacctcct
       61 tgactcgatc taagatgtct ttacacgtat cctttcctgc gtctgctgtt ccatcttgtc
      121 tttcatgatt ccttttcatt ttctttttgt atgcgtcaat gagttggtcg atagaatagt
      181 aagtattggc gtacaaaaac ggcattatta aaacttgtac aatgctatta tcaatacctt
      241 tttacaaatt gttctgttag cgtatgcatt acatgaacaa aataaactga atgtagttta
      301 ggtaaagtaa cttcattttc aatcaaaatc aaccataacc tcagtagttt cttccaaatc
      361 ttcttcatca acaatagtca gagttaattg caaactgaaa gctaagtaat cagcaatctc
      421 atctaattgt gtatctagtg gcttacctgg ttgtttcttc caatttttaa aaaactcaag
      481 tgtgttaatc cactctacaa attcaataat catactaagc tactgtgtca tttaaatttc
      541 tagttggtat tctatcgtcg aactcctttt gtatttgtaa ataactcttg taactgatca
      601 attgttaatg tgttagtcat tttcctgttc ctcctcatat ttatagacaa cttgacccgt
      661 cataatccct actgcttcat caagataaat atcttctttg agtgcaatct tgcatagcat
      721 taggtaaacc ctcaagtatt tcatcaaacg cttgtgcttt cttatacacg tcctcaatct
      781 cttttagtaa tcctctgtgt cattgcgtta cacgcactag cacttataac ggactgttct
      841 atttgttcac ggttattcat tagtgtcatc ctccatttgt ccctaaaaat tcgtagaact
      901 catttgttcc gtctaatttg tccattcggt acaatatagc acttgcgttg atttttagct
      961 cccatgttta tagctactgc cttgttcgct ctactctcaa tctgtagttc gttaagtcta
     1021 aaacggtaaa attcgtatct tccaagcaat tcatttttga ctgtgcgcca catgttctcc
     1081 agctcttcgt tacgctctcg taacttcgct atatcctcga taagctcatc tcgttgcttc
     1141 ttgtactcat cacgttcttt taatgctttg tgaagtttat ctaataaatt gtttaagtta
     1201 gtacaaagtt ttttatattg ttcatctgat aaggtgaccg tcatctcata acctccaata
     1261 gcatctcatt ttcaaaaata tttccaacaa tttcaataat atcgtcattt ttcacttagt
     1321 aattcagtt
//
