LOCUS       CP049578                1025 bp    DNA     circular BCT 24-SEP-2020
DEFINITION  Staphylococcus aureus strain pt174 plasmid pER04882.3A.3, complete
            sequence.
ACCESSION   CP049578
VERSION     CP049578.1
DBLINK      BioProject: PRJNA470993
            BioSample: SAMN12330991
KEYWORDS    .
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus.
REFERENCE   1  (bases 1 to 1025)
  AUTHORS   Caban,A.B., Pak,T., Kumaresh,A., Dupper,A., Chacko,K.,
            Sullivan,M.J., Altman,D.R. and van Bakel,H.
  TITLE     PathoSPOT genomic surveillance reveals prolonged under the radar
            outbreaks of nosocomial methicillin resistant S. aureus bloodstream
            infections
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1025)
  AUTHORS   Caban,A.B., Pak,T., Kumaresh,A., Dupper,A., Chacko,K.,
            Sullivan,M.J., Altman,D.R. and van Bakel,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-FEB-2020) Genetics and Genomic Sciences, Icahn School
            of Medicine, One Gustave L. Levy Place Box 1498, New York, NY 10029,
            USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: HGAP v. 2.3.0
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 194.377495910461x
            Sequencing Technology             :: PacBio
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 02/28/2020 17:04:21
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
            Genes (total)                     :: 2,974
            CDSs (total)                      :: 2,892
            Genes (coding)                    :: 2,790
            CDSs (with protein)               :: 2,790
            Genes (RNA)                       :: 82
            rRNAs                             :: 7, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 59
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 73 of 102
            Pseudo Genes (incomplete)         :: 32 of 102
            Pseudo Genes (internal stop)      :: 17 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..1025
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /strain="pt174"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /db_xref="taxon:1280"
                     /plasmid="pER04882.3A.3"
                     /geo_loc_name="USA:New York City"
                     /lat_lon="40.7903114 N 73.9528738 W"
                     /collection_date="2016"
                     /collected_by="Mount Sinai Hospital"
     gene            210..789
                     /locus_tag="FPO37_14870"
                     /pseudo=""
     CDS             210..789
                     /locus_tag="FPO37_14870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000991705.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /name="hypothetical protein"
ORIGIN
        1 aaattaatgt gaaaaccaat gaataaataa aactttctaa aaagtcaaaa ggattatcaa
       61 ataaaatcga attaacaaaa ttaaaaatta aaaatacaga taataaaata atcaaaaagt
      121 aaaaaaactt attcatatta aactcctttg tttttatatg ttaatattat attgaattca
      181 tttaaataac aaaacaaggg gcatttacaa tgaatgcaat tcaaaacagt atatcactaa
      241 gaaagatttt agtagtatct ttaagtattt taaccatact ttcaatggtc ttggatttta
      301 atttcaaaga agctcaagcc aaaacaaaaa taacattgca gataaaaacg ttgaaacttt
      361 aaacgaaaaa gaaattgaaa aagaactaaa atacatatat ggcaaaatta ttattttaga
      421 taaagacgga acagctaaag atgttaatct agaaaatgcc aaatctcgat atggatatgt
      481 tcctgaagga ttccaaaaac taaaaaacga catagagaat aaaaagaaaa ctagttcaat
      541 atcacctaga gcagttggtg ggaactacaa aaatagcggt gactgtttct attctgaagt
      601 tttaaactca tatggagaac ttttaactgg aaacataatc acagcagttt ttgaagatgt
      661 taaagccaaa aacttaaagg gcgtagcaaa aaaattagct aaaattggat aaaaggaaac
      721 ctagctggaa tcgcagctac tatggtttcg aaggatgtac aatgtaatct taaatacggg
      781 ttactttaga tactatttat tccaattgct ttattgacgt tgagcctcgg aacccttaac
      841 aatcccaaaa cttgtcgaat ggtcggctta atagctcacg ctatgccgac attcgtctgc
      901 aagtttagtt aagggttctt ctcaacatca ataaattttc tcggcataaa tgcgtcgtct
      961 attttttatt atcttcatga taatcatatt tttcttccat ctcgtcaaaa gcatcatctt
     1021 tatag
//
