LOCUS       CP046972                5595 bp    DNA     circular BCT 06-FEB-2023
DEFINITION  Klebsiella pneumoniae strain WCHKP115016 plasmid p4_115016, complete
            sequence.
ACCESSION   CP046972
VERSION     CP046972.1
DBLINK      BioProject: PRJNA353728
            BioSample: SAMN09688132
KEYWORDS    .
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 5595)
  AUTHORS   Hu,Y., Liu,Y., Liu,L., Feng,Y. and Zong,Z.
  TITLE     The complete genome of Klebsiella pneumoniae strain WCHKP115016
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5595)
  AUTHORS   Hu,Y., Liu,Y., Liu,L., Feng,Y. and Zong,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-DEC-2019) Center of Infectious Diseases, West China
            Hospital, Sichuan University, Guoxuexiang 37, Chengdu, Sichuan
            610041, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.4.8
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 100.0x
            Sequencing Technology :: Illumina HiSeq; Oxford Nanopore MiniION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 12/17/2019 14:55:13
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 4.10
            Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
            Genes (total)                     :: 5,698
            CDSs (total)                      :: 5,577
            Genes (coding)                    :: 5,466
            CDSs (with protein)               :: 5,466
            Genes (RNA)                       :: 121
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 10
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 38 of 111
            Pseudo Genes (incomplete)         :: 72 of 111
            Pseudo Genes (internal stop)      :: 16 of 111
            Pseudo Genes (multiple problems)  :: 15 of 111
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..5595
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="WCHKP115016"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="p4_115016"
                     /geo_loc_name="China: Chengdu, Sichuan"
                     /collection_date="2018"
     gene            complement(join(5278..5595,1..228))
                     /locus_tag="DVJ24_28450"
     CDS             complement(join(5278..5595,1..228))
                     /locus_tag="DVJ24_28450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004197758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WCN72480.1"
                     /translation="MFFKRYLTEKEIYKAALPIVRLQGRVNTSLRFLSKYSDVNKNGLI
                     ALHLNLLHFISYNIHGVESLKITQAGINKAVQQSPHADEIKNIAQAIGRKGPEYIEGLI
                     RNPWGKKNDNPLIFIMSIEESIKETLNSGYMLYRVAPITEGEAAAFMDVLKQLLLFEDN
                     FRLFGRDLVYKIEKLKIR"
                     /name="hypothetical protein"
     gene            complement(254..632)
                     /locus_tag="DVJ24_28455"
                     /pseudo=""
     CDS             complement(254..632)
                     /locus_tag="DVJ24_28455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004198370.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /name="hypothetical protein"
     gene            1901..2245
                     /gene="mobC"
                     /locus_tag="DVJ24_28460"
     CDS             1901..2245
                     /gene="mobC"
                     /locus_tag="DVJ24_28460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006122514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="plasmid mobilization relaxosome protein MobC"
                     /protein_id="WCN72481.1"
                     /translation="MAVKRTRFLGIRVTDGEYQQLLERCNGRQLAVWMRETCLDTRPAR
                     SLRLPSIDPVLLRQLAGMGNNLNQIARKINGGQWSGADRVQVVAALMAIDAELERLRHA
                     VLEKGADDDR"
                     /name="mobC"
     gene            2184..2948
                     /locus_tag="DVJ24_28465"
                     /pseudo=""
     CDS             2184..2948
                     /locus_tag="DVJ24_28465"
                     /inference="COORDINATES: protein motif:HMM:NF015397.0"
                     /note="incomplete; partial on complete genome; missing
                     C-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            2923..3432
                     /locus_tag="DVJ24_28470"
     CDS             2923..3432
                     /locus_tag="DVJ24_28470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020325392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mobilization protein"
                     /protein_id="WCN72482.1"
                     /translation="MNSLLTLAKDLEQKSKAQQQSTGEMLKAAFSEHEKSVRAELSESG
                     KRISAAIRAHEQGMSAAMQSNRLSVMRMVGRTWLTITMVSGLLFASLSGVLWYQGSLIA
                     SNLAEIDRQNAALSKLNAKTWGVTYLEDSNGRFLVLPKGTAVDRTQSWTVGNGRSKQNA
                     LRLVKE"
                     /name="mobilization protein"
     gene            3439..3651
                     /gene="mbeD"
                     /locus_tag="DVJ24_28475"
     CDS             3439..3651
                     /gene="mbeD"
                     /locus_tag="DVJ24_28475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WCN72483.1"
                     /translation="MTELEKQLLSALEQLQQDYSKRLDEWESAFGEWRKMSGLMQRENA
                     ALSERVTRLSQQVERLSGQLQRLSR"
                     /name="mbeD"
     gene            4318..4542
                     /locus_tag="DVJ24_28480"
     CDS             4318..4542
                     /locus_tag="DVJ24_28480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000879771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TraY domain-containing protein"
                     /protein_id="WCN72484.1"
                     /translation="MLAIRLSDEIESRLDSLAKQTGRTKTFYAREAILAHLEDLEDYYL
                     SAETAARVRRGDEAVHSSEDVRKSLGLDD"
                     /name="TraY domain-containing protein"
     gene            4526..4792
                     /locus_tag="DVJ24_28485"
     CDS             4526..4792
                     /locus_tag="DVJ24_28485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000262326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system mRNA interferase
                     toxin, RelE/StbE family"
                     /protein_id="WCN72485.1"
                     /translation="MVWTINYSDRALKSLRKMDKQNARRIVDFMSLRIAVAADPRQSGK
                     PLKGELGEFWRYRVGDYRVLCEIRDDELVILAATIGHRREVYD"
                     /name="type II toxin-antitoxin system mRNA interferase
                     toxin, RelE/StbE family"
     gene            complement(4862..5212)
                     /locus_tag="DVJ24_28490"
     CDS             complement(4862..5212)
                     /locus_tag="DVJ24_28490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004197756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WCN72486.1"
                     /translation="MYWLIAFLAFIFPGRSFADGYTAYYRCNGTQEASLTVKDNKLSMV
                     VGLSKFNRQLDTYRFKEKGIEVVMQRAASDDNSEAIMSFIMPDVNNMTLLVKNNGYIIV
                     KTTCWLTKTDKQ"
                     /name="hypothetical protein"
     Typing          1570..1649
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="90.361"
                     /coverage="97.0"
                     /evalue="1.1100000000000001e-21"
     Typing          complement(987..1384)
                     /name="rep_cluster_2370"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="89.526"
                     /coverage="91.0"
                     /evalue="3.03e-139"
     Typing          2236..3767
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="99.804"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 tacagctttg tttatgcctg cttgagtgat tttcagagac tctacaccgt gtatgttgta
       61 tgagataaaa tgtaataaat taagatgcaa tgcaattaat ccatttttgt ttacatctga
      121 gtatttggat aaaaaacgta atgaagtgtt aactctccct tgaagcctaa caattgggag
      181 tgctgccttg tatatttcct tctccgttaa ataccgttta aaaaacataa ttctccgcct
      241 ccgtatagcg tgcctatttt atttcgtcgt aaaacttagc tctgaaatat tcctttagaa
      301 ccatcatgtc attaataatt gaatctatct catccatttt ttcttggtat tcttttaatg
      361 gtgaagggag cggtaactca atatttgaaa agtgattggc gagataggga tcaaggtttc
      421 tcatccattc aggcttttcg ccaatgcgtt cttcaactga aagtgaacct gataatctct
      481 ggttaataag atcacttaga ctcattttgg ttttattcga aagccgttgt aaggattgct
      541 ttaatcctat atctagcatg atatttgttc tttctctcat tacccccctt gctattgcgt
      601 tttttgttgc gcacaaagct accattgcgc attaagaaac gcaataaaaa aggagggagg
      661 gagtggtttg tacatgatgt gcagtgcgct gagggcatca gtggcgggtg tttttccgtg
      721 ggatggatgg agctccgggg ataacagaac tgacgatcat ttaaaggatc ttcttgagat
      781 cctttttttc tgcgcgtaat ctcttgcact gtaaacgaaa aaaccgcctg gggaggcggt
      841 ttgatcgaag gttaagtcag ttggggaact gcttaaccgg gtaactgggt atacgagacc
      901 gcagatacca aaactgttct ttcagtgtag ccgcagttag gcacccactt caagacctct
      961 caatatctct ctcgtatata tccagttacc aatggctgct gccagtggcg tttttgcgtg
     1021 tccgtccggg ttggactcaa gatgatagtt accggaaagg gcgcagcagt cgggctgaac
     1081 ggggggttcg tgcatacagc ccagcttgga gcgaacgacc taaaccgagc cgagatacca
     1141 gcagcgtgag ctatgagaaa gcgccacgct tcccgaaagg gaaaaaggcg gaacaggtat
     1201 ccggtaaacg gcagggtcgg aacaggagag cgcacgaggg agccgccgga gagaaatcac
     1261 cggcatcttt aagtcctgtc gggtttcgtc ctcctctgac ttgagcgtcc atttctgtga
     1321 tgctcgtcag gggaggcgga gcctatggaa aaacggcaac gccgcatcct tttctccggc
     1381 cctttctgat ttgagcgcct ttgctttatc ccgttatccg tgagtcggtc acgcccgccg
     1441 cagccgaacg gcaggagcgc agctaccgag tgagcgagga ggcgtcattt catctgtccg
     1501 tgcatggtat tgcggacgct cctgagccac atatcacacc tgccacatga ggcactttca
     1561 tgaatcgtgc tctcatgcca acatagtaag ccagtataca cagcgtaaac gctgtgactg
     1621 gttcagggct gcgccccgaa acccgctaac accactgacg cgctggcgct tgtccaacgc
     1681 cggagcgacc cggaaaactt ttccgtgccg tccggcgttt gcgaaggagg gataatgcag
     1741 aagccgaaga agaagccgct cgtcgtaaaa aaaagatcct ggcatccggc agtgatggca
     1801 aatctgatgc gtcaggcaca ggaggaagat taccgccggg agcagatggc agagcttgag
     1861 cgttcagccc ggtcacattt tgcggatatc ggaggagagg atggcggtta agcgtacccg
     1921 ttttttaggt atccgggtga ccgatgggga gtaccagcag ctgctggagc gctgcaatgg
     1981 aaggcaactg gcggtgtgga tgcgggaaac ctgtctcgat acgcgcccgg cgcggtcgtt
     2041 gcggctgccg tccatcgatc cggttttgct gcgccagctt gccgggatgg ggaacaacct
     2101 caaccagatc gcccggaaaa ttaacggcgg ccagtggtca ggcgctgacc gggttcaggt
     2161 ggtggccgcg ctgatggcca ttgatgccga actcgagcgg ctgcggcatg ccgtgctgga
     2221 aaagggggca gacgatgatc gttaagtttc atccgcgagg gcgaggcggc ggtgccgggc
     2281 cggtggatta tctgctgggg aaagaccgcc agcgcgacgg ggccatcgtc ctgcagggaa
     2341 agccggagga ggtccgggag cttatcgacg cctcgcccta cgccaaaaag tacacctccg
     2401 gcgtcctgtc ttttgctgaa caggatttac cgcccggcca gcgtgaaaag ctgatggcga
     2461 gcttcgagcg ggttctgatg cccggactcg ataaagacca gtacagcgtg ctgtgggttg
     2521 aacaccggga caaggggcgg ctggaactga attttctggt accgaacacg gaactgctga
     2581 ccggcaggcg tctccagccg tactacgacc gggcagaccg tccgcgcatc gatgcgtggc
     2641 agaccgtggt gaacgggcga ctggggctgc acgacccgaa cgcaccggag aaccggcgcg
     2701 cgctggtgac gccatcttcg ttacccaaaa cgaagcagga agccgcagag gctattacgc
     2761 ggggcttact ggccctcgcc tcgtcagggg agcttaaaac gcgtcaggac gtcactgagg
     2821 cgctggaaag cgcaggtttt gaggtcgtgc gcaccacaaa gagcagcatc agcattgccg
     2881 acccggacgg agggcgaaac atccgactta agggagccat ctatgaacag tcttttaacg
     2941 ctggcgaagg acttagagca gaaatcgaaa gcgcagcagc agagtaccgg cgaaatgctg
     3001 aaagccgcat tcagcgagca cgagaagtct gtcagagcgg aactgagcga aagcgggaag
     3061 agaatcagcg ccgccatccg cgcccacgag cagggtatga gcgcggccat gcagtcgaac
     3121 cgcctgagcg tgatgcgtat ggtcgggcgg acatggctga ccatcacgat ggtgtcagga
     3181 ctgctgttcg ccagcctgag cggggtgttg tggtatcagg ggagcttgat agcgtcaaat
     3241 ctggccgaaa tcgaccggca gaacgcagcg ctgtcgaagc tgaacgcgaa gacctggggc
     3301 gtgacgtacc tggaagacag caacggacgt tttctggtgc tgccgaaggg gacggccgta
     3361 gacaggacgc agagctggac ggtcgggaac gggcggtcga agcagaacgc gctgagactg
     3421 gtgaaggagt aagtgccgat gaccgagctg gaaaaacagt tgctgagcgc attagagcag
     3481 ctacagcagg actactcgaa aaggctggac gagtgggaga gcgccttcgg ggaatggcgg
     3541 aaaatgtcag ggcttatgca acgggagaac gcggcgctga gcgagcgcgt gacgcgcttg
     3601 agtcagcagg tggaacgctt gagcgggcaa ctgcagcgtt tgagccggta gtgcagcgtc
     3661 atgagatggc cgtggccgca gaacgggcgc acgagcaacg gcagcacgaa aaggaactga
     3721 cggaagcgcg ttcccggcag cgaagctatg acggtccgtc gctgggctga aatgcaggaa
     3781 aacagggttc tcatcgggca tttacgctga aaccggatgt cattcacctg gctgcatggc
     3841 tatgcagcca ggtaaaattt atctgtcgcg aacggggcgg tttatcgggt ggtttgttgc
     3901 cggttttacc tgactgccac cccgttcgcg gcgaacccgt ccggggcggt gcgggcaacg
     3961 ggtgttatgt ttaatcagcg tgaacggcag atacaaaaaa gccccggagg gcttttaact
     4021 actgacttat ttttttgaag atttgctggg tttcaatttg tcagtatttc ccggcgtttt
     4081 tttattgtca cgctggcgtt tatcaggttc ccctgttgaa tcggcaattc gtttcggacc
     4141 cggcttaaga cccataatcg ttatcctttc aatagttaag aggaaagccc tcaagctaga
     4201 tatattgacc gcgttacgga ttatcaagag gggctaacaa gattattttt tgttctttta
     4261 ggttgattgt ggtactgttg atatacatgt atagcaaatg gtgttcggga ggtttatatg
     4321 cttgctatcc ggttatctga tgagattgag tcccgtctgg actcgctggc gaagcaaacc
     4381 ggcagaacaa agacgtttta tgcgcgggaa gcaatactgg cgcatctgga agacctggag
     4441 gattattatc tttcagcaga aactgctgca cgcgttcgcc gtggtgatga agcagtgcat
     4501 tcgtctgaag acgtgaggaa gtcacttggt ctggacgatt aactattccg atcgggcgct
     4561 caaatcgtta cgcaagatgg acaaacagaa cgcacgacgg attgtggatt ttatgagttt
     4621 acgcattgca gttgctgccg atcctcgcca gtcagggaag ccgctcaaag gtgagctggg
     4681 cgagttctgg cgctatcggg tgggagatta tcgcgttctg tgtgagatcc gagatgacga
     4741 gcttgttatc cttgccgcca cgattggaca tcgccgcgaa gtttacgact gaagcccgct
     4801 atgcgggctt ttttgatgcc gacaacaggt attatggtaa atactcgact aactacgtgt
     4861 tctactgttt gtcggtttta gttaaccagc aggttgtctt aacgataatg tagccgttat
     4921 ttttaactaa taaggtcata ttgttaacgt caggcataat aaaagacatt atggcctcag
     4981 agttatcatc agaagcagct ctctgcatta ctacttcgat tcccttttct ttgaatctat
     5041 aagtatccag ttgcctatta aacttagaaa gacctacaac catacttagt ttgttatctt
     5101 taacagtaag agatgcttcc tgagtaccat tacatcggta gtaagcggtg taaccgtcag
     5161 caaaagatcg accggggaat ataaatgcta ggaacgcaat taaccaatac atagttgaga
     5221 atcttggtat tacacatttc actatcctct ctttcatttt tcgttcacca tactttgtta
     5281 tctgattttt aatttttcta ttttataaac caagtctcta ccaaaaaggc gaaaattatc
     5341 ctcaaataat aataattgtt taagaacatc catgaaagca gctgcttcac cctcagttat
     5401 gggagctact ctatataaca tataacctga gttaagggtt tcttttatac tttcttcaat
     5461 gctcattata aatattagtg gattatcatt tttcttcccc catgggtttc taattaatcc
     5521 ttcgatgtac tcaggtcctt tgcgtcctat tgcctgcgca atatttttta tttcatctgc
     5581 gtgagggctt tgttg
//
