LOCUS       CP046971                6431 bp    DNA     circular BCT 06-FEB-2023
DEFINITION  Klebsiella pneumoniae strain WCHKP115016 plasmid p3_115016, complete
            sequence.
ACCESSION   CP046971
VERSION     CP046971.1
DBLINK      BioProject: PRJNA353728
            BioSample: SAMN09688132
KEYWORDS    .
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 6431)
  AUTHORS   Hu,Y., Liu,Y., Liu,L., Feng,Y. and Zong,Z.
  TITLE     The complete genome of Klebsiella pneumoniae strain WCHKP115016
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 6431)
  AUTHORS   Hu,Y., Liu,Y., Liu,L., Feng,Y. and Zong,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-DEC-2019) Center of Infectious Diseases, West China
            Hospital, Sichuan University, Guoxuexiang 37, Chengdu, Sichuan
            610041, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.4.8
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 100.0x
            Sequencing Technology :: Illumina HiSeq; Oxford Nanopore MiniION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 12/17/2019 14:55:13
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 4.10
            Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
            Genes (total)                     :: 5,698
            CDSs (total)                      :: 5,577
            Genes (coding)                    :: 5,466
            CDSs (with protein)               :: 5,466
            Genes (RNA)                       :: 121
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 10
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 38 of 111
            Pseudo Genes (incomplete)         :: 72 of 111
            Pseudo Genes (internal stop)      :: 16 of 111
            Pseudo Genes (multiple problems)  :: 15 of 111
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..6431
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="WCHKP115016"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="p3_115016"
                     /geo_loc_name="China: Chengdu, Sichuan"
                     /collection_date="2018"
     gene            complement(join(6115..6431,1))
                     /locus_tag="DVJ24_28405"
                     /pseudo=""
     CDS             complement(join(6115..6431,1))
                     /locus_tag="DVJ24_28405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014342204.1"
                     /note="incomplete; partial on complete genome; missing
                     N-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="sodium:proton antiporter"
                     /name="sodium:proton antiporter"
     gene            complement(53..757)
                     /locus_tag="DVJ24_28410"
     CDS             complement(53..757)
                     /locus_tag="DVJ24_28410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_569410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS6-like element IS26 family transposase"
                     /protein_id="WCN72474.1"
                     /translation="MNPFKGRHFQRDIILWAVRWYCKYGISYRELQEMLAERGVNVDHS
                     TIYRWVQRYAPEMEKRLRWYWRNPSDLCPWHMDETYVKVNGRWAYLYRAVDSRGRTVDF
                     YLSSRRNSKAAYRFLGKILNNVKKWQIPRFINTDKAPAYGRALALLKREGRCPSDVEHR
                     QIKYRNNVIECDHGKLKRIIGATLGFKSMKTAYATIKGIEVMRALRKGQASAFYYGDPL
                     GEMRLVSRVFEM"
                     /name="IS6-like element IS26 family transposase"
     gene            822..1412
                     /locus_tag="DVJ24_28415"
                     /pseudo=""
     CDS             822..1412
                     /locus_tag="DVJ24_28415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000198547.1"
                     /note="incomplete; partial on complete genome; missing
                     N-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="IS91 family transposase"
                     /name="IS91 family transposase"
     gene            1868..2572
                     /locus_tag="DVJ24_28420"
     CDS             1868..2572
                     /locus_tag="DVJ24_28420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_569410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS6-like element IS26 family transposase"
                     /protein_id="WCN72475.1"
                     /translation="MNPFKGRHFQRDIILWAVRWYCKYGISYRELQEMLAERGVNVDHS
                     TIYRWVQRYAPEMEKRLRWYWRNPSDLCPWHMDETYVKVNGRWAYLYRAVDSRGRTVDF
                     YLSSRRNSKAAYRFLGKILNNVKKWQIPRFINTDKAPAYGRALALLKREGRCPSDVEHR
                     QIKYRNNVIECDHGKLKRIIGATLGFKSMKTAYATIKGIEVMRALRKGQASAFYYGDPL
                     GEMRLVSRVFEM"
                     /name="IS6-like element IS26 family transposase"
     gene            complement(2623..3240)
                     /locus_tag="DVJ24_28425"
                     /pseudo=""
     CDS             complement(2623..3240)
                     /locus_tag="DVJ24_28425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000947205.1"
                     /note="incomplete; partial on complete genome; missing
                     C-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="IS91 family transposase"
                     /name="IS91 family transposase"
     gene            complement(3250..3438)
                     /locus_tag="DVJ24_28430"
     CDS             complement(3250..3438)
                     /locus_tag="DVJ24_28430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000957857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WCN72476.1"
                     /translation="MLTRKSIDTVLLSVGAEKLSQREWDWMKMLKPMDPPPAMVTTSIL
                     KRRGDTAALTLLQDTGV"
                     /name="hypothetical protein"
     gene            3530..4066
                     /locus_tag="DVJ24_28435"
     CDS             3530..4066
                     /locus_tag="DVJ24_28435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001425784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WCN72479.1"
                     /translation="MCSRQAAVVHLQVRALKDAGVKANRIFTDKASGSSTDREGLDLLR
                     MKVEEGDVILVKKLDRLGRDTADMIQLIKEFDAQGVAVRFIDDGISTDGDMGQMVVTIL
                     SAVAQAERRRILERTNEGRQEAKLKGIKFGRRRTVDRNVVLTLHQKGTGATEIAHQLSI
                     ARSTVYKILEDERAS"
                     /name="helix-turn-helix domain-containing protein"
     gene            4249..5109
                     /locus_tag="DVJ24_28440"
     CDS             4249..5109
                     /locus_tag="DVJ24_28440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_032489893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class A broad-spectrum beta-lactamase TEM-1"
                     /protein_id="WCN72477.1"
                     /translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYI
                     ELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYS
                     PVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRW
                     EPELNEAIPNDERDTTMPAAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA
                     LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGAS
                     LIKHW"
                     /name="class A broad-spectrum beta-lactamase TEM-1"
     gene            5279..6034
                     /locus_tag="DVJ24_28445"
     CDS             5279..6034
                     /locus_tag="DVJ24_28445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012372818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(1405)-N(7))-methyltransferase
                     RmtB1"
                     /protein_id="WCN72478.1"
                     /translation="MNINDALTSILASKKYRALCPDTVRRILTEEWGRHKSPKQTVEAA
                     RTRLHGICGAYVTPESLKAAAAALSAGDVKKALSLHASTKERLAELDTLYDFIFSAETP
                     RRVLDIACGLNPLALYERGIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPP
                     AEAGDLALIFKLLPLLEREQAGSAMALLQSLNTPRMAVSFPTRSLGGRGKGMEANYAAW
                     FEGGLPAEFEIEDKKTIGTELIYLIKKNG"
                     /name="16S rRNA (guanine(1405)-N(7))-methyltransferase
                     RmtB1"
     ARG             5280..6031
                     /name="rmtB1"
                     /gene="rmtB1"
                     /gene_name="16S rRNA (guanine(1405)-N(7))-methyltransferase
                     RmtB1"
                     /tool="amrfinderplus"
                     /drug_class="AMINOGLYCOSIDE"
                     /identity="100.0"
                     /coverage="100.0"
     ARG             4250..5106
                     /name="blaTEM-1"
                     /gene="blaTEM-1"
                     /gene_name="broad-spectrum class A beta-lactamase TEM-1"
                     /tool="amrfinderplus"
                     /drug_class="BETA-LACTAM"
                     /identity="100.0"
                     /coverage="100.0"
     ARG             5280..6034
                     /name="rmtB"
                     /gene="rmtB"
                     /gene_name="16S rRNA methyltransferase (G1405)"
                     /tool="rgi"
                     /drug_class="aminoglycoside antibiotic"
                     /identity="100.0"
                     /coverage="100.0"
ORIGIN
        1 ggcactgttg caaagttagc gatgaggcag ccttttgtct tattcaaagg ccttacattt
       61 caaaaactct gcttaccagg cgcatttcgc ccaggggatc accataataa aatgctgagg
      121 cctggccttt gcgtagtgca cgcatcacct caataccttt gatggtggcg taagccgtct
      181 tcatggattt aaatcccagc gtggcgccga ttatccgttt cagtttgcca tgatcgcatt
      241 caatcacgtt gttccggtac ttaatctgtc ggtgttcaac gtcagacggg caccggcctt
      301 cgcgtttgag cagagcaagc gcgcgaccat aggcgggcgc tttatccgtg ttgatgaatc
      361 gcgggatctg ccacttcttc acgttgttga ggattttacc cagaaaccgg tatgcagctt
      421 tgctgttacg acgggaggag agataaaaat cgacagtgcg gccccggctg tcgacggccc
      481 ggtacagata cgcccagcgg ccattgacct tcacgtaggt ttcatccatg tgccacgggc
      541 aaagatcgga agggttacgc cagtaccagc gcagccgttt ttccatttca ggcgcataac
      601 gctgaaccca gcggtaaatc gtggagtgat cgacattcac tccgcgttca gccagcatct
      661 cctgcagctc acggtaactg atgccgtatt tgcagtacca gcgtacggcc cacagaatga
      721 tgtcacgctg aaaatgccgg cctttgaatg ggttcatgtg cagctccatc agcaaaaggg
      781 gatgataagt ttatcaccac cgactatttg caacagtgcc gtcagagggg atggcaatgc
      841 cggagtcgtt gtcacatatc acgacggaat cacagtggag aagcctggtg ctgaaatccg
      901 gcggaaaata ctggcatgtg tacatgtcga agaagacagc cggagggcgg aatacggcac
      961 gctacctggg tcgttatctg aagaagccac caatagcggc ttcccgactg gctcattaca
     1021 acggaggggc aagcctgagc ttccgttacc tggaccacaa aacgggagaa acggcgacgg
     1081 aaacgctgac acagcgtgag ctggtcgcga ggctgaaaca gcacatcccg gagaagtttt
     1141 ttaagatggt gaggtacttc gggttccttg ccaaccgtgt gtgtggagag aagctgccgc
     1201 aggtgtaccg tgcactgggg atggataaac cggaaccagt ggcgaaagtg tgctatgcac
     1261 aaatggtgaa acagttcctg agtcgtgacc cgttcgaatg cgtgctgtgt ggctgccgga
     1321 tggtataccg ccgggccatt gcggggctga atgtatcagg gctgaagaaa aacgcgcggg
     1381 atatcagtct actgaggtat atgccggcct gacacaggct aagtgtgccc gggaatcggt
     1441 gaaagtataa aaaacagcct gttacggtat aaaaatcgac catacagaga gggaaaccac
     1501 cggagtggtg ggaaaagcag aaaggctcac gtggcataag gcgtggacaa tggtatcgac
     1561 tggtttttca atttcctata cgtcaagaga ctgctgactg gttgagaccc gagcgtaacc
     1621 aaaaagtcgc ataaaaatgt accttaaatc gaatatcgga caactcatgt ctattattac
     1681 aaatttacga tttaatagac atattaatgt aacagtttta cgatgtccga taatttataa
     1741 catttcgtac ggttggaaaa atgttactaa atgcccgtca ggcagggagg ccgatatgcc
     1801 cgttggcact gttgcaaata gtcggtggtg ataaacttat catccccttt tgctgatgga
     1861 gctgcacatg aacccattca aaggccggca ttttcagcgt gacatcattc tgtgggccgt
     1921 acgctggtac tgcaaatacg gcatcagtta ccgtgagctg caggagatgc tggctgaacg
     1981 cggagtgaat gtcgatcact ccacgattta ccgctgggtt cagcgttatg cgcctgaaat
     2041 ggaaaaacgg ctgcgctggt actggcgtaa cccttccgat ctttgcccgt ggcacatgga
     2101 tgaaacctac gtgaaggtca atggccgctg ggcgtatctg taccgggccg tcgacagccg
     2161 gggccgcact gtcgattttt atctctcctc ccgtcgtaac agcaaagctg cataccggtt
     2221 tctgggtaaa atcctcaaca acgtgaagaa gtggcagatc ccgcgattca tcaacacgga
     2281 taaagcgccc gcctatggtc gcgcgcttgc tctgctcaaa cgcgaaggcc ggtgcccgtc
     2341 tgacgttgaa caccgacaga ttaagtaccg gaacaacgtg attgaatgcg atcatggcaa
     2401 actgaaacgg ataatcggcg ccacgctggg atttaaatcc atgaagacgg cttacgccac
     2461 catcaaaggt attgaggtga tgcgtgcact acgcaaaggc caggcctcag cattttatta
     2521 tggtgatccc ctgggcgaaa tgcgcctggt aagcagagtt tttgaaatgt aaggcctttg
     2581 aataagacaa aaggctgcct catcgctaac tttgcaacag tgcccctctg accacgcttt
     2641 cagaagcagc tgccgcatat tccacatcca ccgtgaacgc atcgcgtctt tcaggaagct
     2701 cagctttttc cactgaccat gcttattcag acctccacag gttacagaca catgtacatg
     2761 cggatgccag ttgagacgac ggccatacgt gtggatggcg cagaagatac cgggttccag
     2821 cccccgtttt cgggcggcat acagcagatt ctccaccgcc agacggcaca cgtcattcag
     2881 cagccagcgg ttgctttcga acaccggcca cagcgtgtcc ggcagggtga agaccagatg
     2941 tacccagtcg cagtcaggaa gacgattcag ctgtgttgct gtccacaggt ctgtggcctt
     3001 ctttccgcag gacgggcagg cacggctgcc gcatgagttg gtcaggtact ttacgtgctg
     3061 acagtccggg ttatcacacc cgaactcttt tacacccagt atccgtgtgc cgcaggccag
     3121 cattttggtg acggcttcaa cctcgatatc gcgcagaccg cccgcatcca ggaaggacgt
     3181 ccagcactgg ttggctgtga acagacgttt cagagggcgg ggagtaaaac cggacaacat
     3241 gaggatggat taaaccccgg tatcctgtag cagggtaagg gctgctgtat cgccacggcg
     3301 cttcaggatg gaggtcgtca ccatcgcagg tggtgggtcc atgggtttga gcattttcat
     3361 ccagtcccat tctcgttgtg agagcttctc agcaccaaca gagagcagaa ctgtatcgat
     3421 acttttgcgg gtcaacataa ggggatgagt ccttaataaa acaggtcctc agagcataca
     3481 tattctgcgg ggcgtgcggc aacaacagga cgaaccgggg cggttttcaa tttgcagccg
     3541 ccaggctgcc gtggttcatc ttcaggtcag agcactcaaa gacgcaggtg tgaaagcaaa
     3601 ccgtatattt accgataagg catccggcag ttcaacagac cgggaagggc tggatttgct
     3661 gaggatgaag gtggaggaag gtgatgtcat tctggttaag aagctcgacc gtcttggccg
     3721 cgacactgcc gatatgatcc aactgataaa ggaatttgac gctcagggcg tggcagtccg
     3781 gttcattgat gacgggatca gtaccgacgg tgatatgggg caaatggtgg tcaccatcct
     3841 gtcggctgtg gcacaggctg aacgccggag gatcctagaa cgcacgaatg agggccgaca
     3901 ggaagcaaag ctgaaaggaa tcaaatttgg ccgcaggcgt accgtggaca ggaacgtcgt
     3961 gctgacgctt catcagaagg gcactggtgc aacggaaatt gctcatcagc tcagtattgc
     4021 ccgctccacg gtttataaaa ttcttgaaga cgaaagggcc tcgtgatacg cctattttta
     4081 taggttaatg tcatgataat aatggtttct tagacgtcag gtggcacttt tcggggaaat
     4141 gtgcgcggaa cccctatttg tttatttttc taaatacatt caaatatgta tccgctcatg
     4201 agacaataac cctggtaaat gcttcaataa tattgaaaaa ggaagagtat gagtattcaa
     4261 cattttcgtg tcgcccttat tccctttttt gcggcatttt gccttcctgt ttttgctcac
     4321 ccagaaacgc tggtgaaagt aaaagatgct gaagatcagt tgggtgcacg agtgggttac
     4381 atcgaactgg atctcaacag cggtaagatc cttgagagtt ttcgccccga agaacgtttt
     4441 ccaatgatga gcacttttaa agttctgcta tgtggtgcgg tattatcccg tgttgacgcc
     4501 gggcaagagc aactcggtcg ccgcatacac tattctcaga atgacttggt tgagtactca
     4561 ccagtcacag aaaagcatct tacggatggc atgacagtaa gagaattatg cagtgctgcc
     4621 ataaccatga gtgataacac tgctgccaac ttacttctga caacgatcgg aggaccgaag
     4681 gagctaaccg cttttttgca caacatgggg gatcatgtaa ctcgccttga tcgttgggaa
     4741 ccggagctga atgaagccat accaaacgac gagcgtgaca ccacgatgcc tgcagcaatg
     4801 gcaacaacgt tgcgcaaact attaactggc gaactactta ctctagcttc ccggcaacaa
     4861 ttaatagact ggatggaggc ggataaagtt gcaggaccac ttctgcgctc ggcccttccg
     4921 gctggctggt ttattgctga taaatctgga gccggtgagc gtgggtctcg cggtatcatt
     4981 gcagcactgg ggccagatgg taagccctcc cgtatcgtag ttatctacac gacggggagt
     5041 caggcaacta tggatgaacg aaatagacag atcgctgaga taggtgcctc actgattaag
     5101 cattggtaac tgtcagacca agtttactca tatatacttt agattgattt aaaacttcat
     5161 ttttaattta aaaggatcta ggtgaagatc ctttttgata atctcatgac caaaatccct
     5221 taacgtgagt tttcgttcca ctgagcgtca gaccccgaaa acgatttagg agacaccgat
     5281 gaacatcaac gatgccctca cctccatcct ggcctcaaaa aaataccgcg ccctttgccc
     5341 ggataccgtg cggcgcatcc tgactgagga atgggggcgg cataaatccc ccaaacagac
     5401 cgtagaggct gcacgcaccc ggctgcatgg aatttgcggg gcatatgtca ccccggaatc
     5461 gctcaaggct gctgccgccg cgctttctgc gggcgatgta aaaaaggcat tgtcgctgca
     5521 tgcctccacc aaggagcgac tggccgagct ggataccctg tacgatttta tcttttcagc
     5581 cgaaactccc cgccgcgtgc tggatatcgc ctgcggtctt aaccccttgg cgctatacga
     5641 gcgcggcatt gcatccgtgt ggggctgtga tatccaccag ggattggggg atgtcatcac
     5701 cccctttgct agggaaaaag attgggattt tacctttgcc ctgcaggatg tgctgtgtgc
     5761 gccgcccgcc gaagccggcg acctggcgct gatttttaag cttttgcccc tgctggagcg
     5821 ggagcaggcc ggttctgcca tggcactttt acaatccctc aataccccgc gcatggctgt
     5881 cagctttccc acgcgtagtt taggcgggcg tggaaaaggc atggaggcga actacgccgc
     5941 atggttcgag ggcggcttgc ccgccgagtt tgagattgag gataaaaaga ccatcggaac
     6001 agaacttata tacttgataa aaaagaatgg ataagccaat cagaaggcaa atcatctaaa
     6061 aaagaggaac gaaaaatatt tttcgttcct cttttgttct atcgaacaag cacactacga
     6121 ctgctgtttt tgaagcagcc ttttatagct cagctcgatg cccaacgccc ccagcggcgc
     6181 tgtaagtata atggcaagaa ccgccaccgc aagtatggtt tccccactgc caagccccat
     6241 cgccagcgga atagcgccga ttgcagcctg caccgttgcc ttgggcagat aggcaatcat
     6301 gcagaacagg cgctccttcc gggataggtc tgtacccagc gtactcatcc acacgcccag
     6361 catgcgaaac agcagcgcag ctgtgatcag cagcatgccg cttagcccgg cggagaaaag
     6421 gtaacggatg t
//
