LOCUS       CP046890                5596 bp    DNA     circular BCT 06-FEB-2023
DEFINITION  Klebsiella pneumoniae strain WCHKP090276 plasmid p3_090276, complete
            sequence.
ACCESSION   CP046890
VERSION     CP046890.1
DBLINK      BioProject: PRJNA353728
            BioSample: SAMN13567230
KEYWORDS    .
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 5596)
  AUTHORS   Wei,L., Liu,Y., Liu,L., Feng,Y. and Zong,Z.
  TITLE     The complete genome of Klebsiella pneumoniae strain WCHKP090276
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5596)
  AUTHORS   Wei,L., Liu,Y., Liu,L., Feng,Y. and Zong,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2019) Center of Infectious Diseases, West China
            Hospital, Sichuan University, Guoxuexiang 37, Chengdu, Sichuan
            610041, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.4.8
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 100.0x
            Sequencing Technology :: Illumina HiSeq; Oxford Nanopore MiniION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 12/16/2019 11:38:46
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 4.10
            Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
            Genes (total)                     :: 5,825
            CDSs (total)                      :: 5,703
            Genes (coding)                    :: 5,590
            CDSs (with protein)               :: 5,590
            Genes (RNA)                       :: 122
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 10
            Pseudo Genes (total)              :: 113
            CDSs (without protein)            :: 113
            Pseudo Genes (ambiguous residues) :: 0 of 113
            Pseudo Genes (frameshifted)       :: 41 of 113
            Pseudo Genes (incomplete)         :: 71 of 113
            Pseudo Genes (internal stop)      :: 20 of 113
            Pseudo Genes (multiple problems)  :: 18 of 113
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..5596
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="WCHKP090276"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="p3_090276"
                     /geo_loc_name="China: Chengdu, Sichuan"
                     /collection_date="2019-03"
     gene            678..1057
                     /locus_tag="GQR74_29085"
                     /pseudo=""
     CDS             678..1057
                     /locus_tag="GQR74_29085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004198370.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /name="hypothetical protein"
     gene            1083..1628
                     /locus_tag="GQR74_29090"
     CDS             1083..1628
                     /locus_tag="GQR74_29090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004197758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WCN56565.1"
                     /translation="MFFKRYLTEKEIYKAALPIVRLQGRVNTSLRFLSKYSDVNKNGLI
                     ALHLNLLHFISYNIHGVESLKITQAGINKAVQQSPHADEIKNIAQAIGRKGPEYIEGLI
                     RNPWGKKNDNPLIFIMSIEESIKETLNSGYMLYRVAPITEGEAAAFMDVLKQLLLFEDN
                     FRLFGRDLVYKIEKLKIR"
                     /name="hypothetical protein"
     gene            1694..2044
                     /locus_tag="GQR74_29095"
     CDS             1694..2044
                     /locus_tag="GQR74_29095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004197756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WCN56566.1"
                     /translation="MYWLIAFLAFIFPGRSFADGYTAYYRCNGTQEASLTVKDNKLSMV
                     VGLSKFNRQLDTYRFKEKGIEVVMQRAASDDNSEAIMSFIMPDVNNMTLLVKNNGYIIV
                     KTTCWLTKTDKQ"
                     /name="hypothetical protein"
     gene            complement(2114..2380)
                     /locus_tag="GQR74_29100"
     CDS             complement(2114..2380)
                     /locus_tag="GQR74_29100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000262326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system mRNA interferase
                     toxin, RelE/StbE family"
                     /protein_id="WCN56567.1"
                     /translation="MVWTINYSDRALKSLRKMDKQNARRIVDFMSLRIAVAADPRQSGK
                     PLKGELGEFWRYRVGDYRVLCEIRDDELVILAATIGHRREVYD"
                     /name="type II toxin-antitoxin system mRNA interferase
                     toxin, RelE/StbE family"
     gene            complement(2364..2588)
                     /locus_tag="GQR74_29105"
     CDS             complement(2364..2588)
                     /locus_tag="GQR74_29105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000879771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TraY domain-containing protein"
                     /protein_id="WCN56568.1"
                     /translation="MLAIRLSDEIESRLDSLAKQTGRTKTFYAREAILAHLEDLEDYYL
                     SAETAARVRRGDEAVHSSEDVRKSLGLDD"
                     /name="TraY domain-containing protein"
     gene            complement(3255..3467)
                     /gene="mbeD"
                     /locus_tag="GQR74_29110"
     CDS             complement(3255..3467)
                     /gene="mbeD"
                     /locus_tag="GQR74_29110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WCN56569.1"
                     /translation="MTELEKQLLSALEQLQQDYSKRLDEWESAFGEWRKMSGLMQRENA
                     ALSERVTRLSQQVERLSGQLQRLSR"
                     /name="mbeD"
     gene            complement(3474..3983)
                     /locus_tag="GQR74_29115"
     CDS             complement(3474..3983)
                     /locus_tag="GQR74_29115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020325392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mobilization protein"
                     /protein_id="WCN56570.1"
                     /translation="MNSLLTLAKDLEQKSKAQQQSTGEMLKAAFSEHEKSVRAELSESG
                     KRISAAIRAHEQGMSAAMQSNRLSVMRMVGRTWLTITMVSGLLFASLSGVLWYQGSLIA
                     SNLAEIDRQNAALSKLNAKTWGVTYLEDSNGRFLVLPKGTAVDRTQSWTVGNGRSKQNA
                     LRLVKE"
                     /name="mobilization protein"
     gene            complement(3958..4722)
                     /locus_tag="GQR74_29120"
                     /pseudo=""
     CDS             complement(3958..4722)
                     /locus_tag="GQR74_29120"
                     /inference="COORDINATES: protein motif:HMM:NF015397.0"
                     /note="incomplete; partial on complete genome; missing
                     C-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            complement(4661..5005)
                     /gene="mobC"
                     /locus_tag="GQR74_29125"
     CDS             complement(4661..5005)
                     /gene="mobC"
                     /locus_tag="GQR74_29125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006122514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="plasmid mobilization relaxosome protein MobC"
                     /protein_id="WCN56571.1"
                     /translation="MAVKRTRFLGIRVTDGEYQQLLERCNGRQLAVWMRETCLDTRPAR
                     SLRLPSIDPVLLRQLAGMGNNLNQIARKINGGQWSGADRVQVVAALMAIDAELERLRHA
                     VLEKGADDDR"
                     /name="mobC"
     Typing          complement(5258..5334)
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="91.25"
                     /coverage="98.0"
                     /evalue="1.04e-21"
     Typing          complement(104..284)
                     /name="ColRNAI_rep_cluster_1857"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="93.956"
                     /coverage="90.0"
                     /evalue="3.08e-71"
     Typing          complement(3140..4671)
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="99.804"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 gacgctcaag tcagaggagg acgaaacccg acaggactta aagatgccgg tgatttctct
       61 ccggcggctc cctcgtgcgc tctcctgttc cgaccctgcc gtttaccgga tacctgttcc
      121 gcctttttcc ctttcgggaa gcgtggcgct ttctcatagc tcacgctgct ggtatctcgg
      181 ctcggtttag gtcgttcgct ccaagctggg ctgtatgcac gaaccccccg ttcagcccga
      241 ctgctgcgcc ctttccggta actatcatct tgagtccaac ccggacggac acgcaaaaac
      301 gccactggca gcagccattg gtaactggat atatacgaga gagatattga gaggtcttga
      361 agtgggtgcc taactgcggc tacactgaaa gaacagtttt ggtatctgcg gtctcgtata
      421 cccagttacc cggttaagca gttccccaac tgacttaacc ttcgatcaaa ccgcctcccc
      481 aggcggtttt ttcgtttaca gtgcaagaga ttacgcgcag aaaaaaagga tctcaagaag
      541 atcctttaaa tgatcgtcag ttctgttatc cccggagctc catccatccc acggaaaaac
      601 acccgccact gatgccctca gcgcactgca catcatgtac aaaccactcc ctccctcctt
      661 ttttattgcg tttcttaatg cgcaatggta gctttgtgcg caacaaaaaa cgcaatagca
      721 agggggggta atgagagaaa gaacaaatat catgctagat ataggattaa agcaatcctt
      781 acaacggctt tcgaataaaa ccaaaatgag tctaagtgat cttattaacc agagattatc
      841 aggttcactt tcagttgaag aacgcattgg cgaaaagcct gaatggatga gaaaccttga
      901 tccctatctc gccaatcact tttcaaatat tgagttaccg ctcccttcac cattaaaaga
      961 ataccaagaa aaaatggatg agatagattc aattattaat gacatgatgg ttctaaagga
     1021 atatttcaga gctaagtttt acgacgaaat aaaataggca cgctatacgg aggcggagaa
     1081 ttatgttttt taaacggtat ttaacggaga aggaaatata caaggcagca ctcccaattg
     1141 ttaggcttca agggagagtt aacacttcat tacgtttttt atccaaatac tcagatgtaa
     1201 acaaaaatgg attaattgca ttgcatctta atttattaca ttttatctca tacaacatac
     1261 acggtgtaga gtctctgaaa atcactcaag caggcataaa caaagctgta caacaaagcc
     1321 ctcacgcaga tgaaataaaa aatattgcgc aggcaatagg acgcaaagga cctgagtaca
     1381 tcgaaggatt aattagaaac ccatggggga agaaaaatga taatccacta atatttataa
     1441 tgagcattga agaaagtata aaagaaaccc ttaactcagg ttatatgtta tatagagtag
     1501 ctcccataac tgagggtgaa gcagctgctt tcatggatgt tcttaaacaa ttattattat
     1561 ttgaggataa ttttcgcctt tttggtagag acttggttta taaaatagaa aaattaaaaa
     1621 tcagataaca aagtatggtg aacgaaaaat gaaagagagg atagtgaaat gtgtaatacc
     1681 aagattctca actatgtatt ggttaattgc gttcctagca tttatattcc ccggtcgatc
     1741 ttttgctgac ggttacaccg cttactaccg atgtaatggt actcaggaag catctcttac
     1801 tgttaaagat aacaaactaa gtatggttgt aggtctttct aagtttaata ggcaactgga
     1861 tacttataga ttcaaagaaa agggaatcga agtagtaatg cagagagctg cttctgatga
     1921 taactctgag gccataatgt cttttattat gcctgacgtt aacaatatga ccttattagt
     1981 taaaaataac ggctacatta tcgttaagac aacctgctgg ttaactaaaa ccgacaaaca
     2041 gtagaacacg tagttagtcg agtatttacc ataatacctg ttgtcggcat caaaaaagcc
     2101 cgcatagcgg gcttcagtcg taaacttcgc ggcgatgtcc aatcgtggcg gcaaggataa
     2161 caagctcgtc atctcggatc tcacacagaa cgcgataatc tcccacccga tagcgccaga
     2221 actcgcccag ctcacctttg agcggcttcc ctgactggcg aggatcggca gcaactgcaa
     2281 tgcgtaaact cataaaatcc acaatccgtc gtgcgttctg tttgtccatc ttgcgtaacg
     2341 atttgagcgc ccgatcggaa tagttaatcg tccagaccaa gtgacttcct cacgtcttca
     2401 gacgaatgca ctgcttcatc accacggcga acgcgtgcag cagtttctgc tgaaagataa
     2461 taatcctcca ggtcttccag atgcgccagt attgcttccc gcgcataaaa cgtctttgtt
     2521 ctgccggttt gcttcgccag cgagtccaga cgggactcaa tctcatcaga taaccggata
     2581 gcaagcatat aaacctcccg aacaccattt gctatacatg tatatcaaca gtaccacaat
     2641 caacctaaaa gaacaaaaaa taatcttgtt agcccctctt gataatccgt aacgcggtca
     2701 atatatctag cttgagggct ttcctcttaa ctattgaaag gataacgatt atgggtctta
     2761 agccgggtcc gaaacgaatt gccgattcaa caggggaacc tgataaacgc cagcgtgaca
     2821 ataaaaaaac gccgggaaat actgacaaat tgaaacccag caaatcttca aaaaaataag
     2881 tcagtagtta aaagccctcc ggggcttttt tgtatctgcc gttcacgctg attaaacata
     2941 acacccgttg cccgcaccgc cccggacggg ttcgccgcga acggggtggc agtcaggtaa
     3001 aaccggcaac aaaccacccg ataaaccgcc ccgttcgcga cagataaatt ttacctggct
     3061 gcatagccat gcagccaggt gaatgacatc cggtttcagc gtaaatgccc gatgagaacc
     3121 ctgttttcct gcatttcagc ccagcgacgg accgtcatag cttcgctgcc gggaacgcgc
     3181 ttccgtcagt tccttttcgt gctgccgttg ctcgtgcgcc cgttctgcgg ccacggccat
     3241 ctcatgacgc tgcactaccg gctcaaacgc tgcagttgcc cgctcaagcg ttccacctgc
     3301 tgactcaagc gcgtcacgcg ctcgctcagc gccgcgttct cccgttgcat aagccctgac
     3361 attttccgcc attccccgaa ggcgctctcc cactcgtcca gccttttcga gtagtcctgc
     3421 tgtagctgct ctaatgcgct cagcaactgt ttttccagct cggtcatcgg cacttactcc
     3481 ttcaccagtc tcagcgcgtt ctgcttcgac cgcccgttcc cgaccgtcca gctctgcgtc
     3541 ctgtctacgg ccgtcccctt cggcagcacc agaaaacgtc cgttgctgtc ttccaggtac
     3601 gtcacgcccc aggtcttcgc gttcagcttc gacagcgctg cgttctgccg gtcgatttcg
     3661 gccagatttg acgctatcaa gctcccctga taccacaaca ccccgctcag gctggcgaac
     3721 agcagtcctg acaccatcgt gatggtcagc catgtccgcc cgaccatacg catcacgctc
     3781 aggcggttcg actgcatggc cgcgctcata ccctgctcgt gggcgcggat ggcggcgctg
     3841 attctcttcc cgctttcgct cagttccgct ctgacagact tctcgtgctc gctgaatgcg
     3901 gctttcagca tttcgccggt actctgctgc tgcgctttcg atttctgctc taagtccttc
     3961 gccagcgtta aaagactgtt catagatggc tcccttaagt cggatgtttc gccctccgtc
     4021 cgggtcggca atgctgatgc tgctctttgt ggtgcgcacg acctcaaaac ctgcgctttc
     4081 cagcgcctca gtgacgtcct gacgcgtttt aagctcccct gacgaggcga gggccagtaa
     4141 gccccgcgta atagcctctg cggcttcctg cttcgttttg ggtaacgaag atggcgtcac
     4201 cagcgcgcgc cggttctccg gtgcgttcgg gtcgtgcagc cccagtcgcc cgttcaccac
     4261 ggtctgccac gcatcgatgc gcggacggtc tgcccggtcg tagtacggct ggagacgcct
     4321 gccggtcagc agttccgtgt tcggtaccag aaaattcagt tccagccgcc ccttgtcccg
     4381 gtgttcaacc cacagcacgc tgtactggtc tttatcgagt ccgggcatca gaacccgctc
     4441 gaagctcgcc atcagctttt cacgctggcc gggcggtaaa tcctgttcag caaaagacag
     4501 gacgccggag gtgtactttt tggcgtaggg cgaggcgtcg ataagctccc ggacctcctc
     4561 cggctttccc tgcaggacga tggccccgtc gcgctggcgg tctttcccca gcagataatc
     4621 caccggcccg gcaccgccgc ctcgccctcg cggatgaaac ttaacgatca tcgtctgccc
     4681 ccttttccag cacggcatgc cgcagccgct cgagttcggc atcaatggcc atcagcgcgg
     4741 ccaccacctg aacccggtca gcgcctgacc actggccgcc gttaattttc cgggcgatct
     4801 ggttgaggtt gttccccatc ccggcaagct ggcgcagcaa aaccggatcg atggacggca
     4861 gccgcaacga ccgcgccggg cgcgtatcga gacaggtttc ccgcatccac accgccagtt
     4921 gccttccatt gcagcgctcc agcagctgct ggtactcccc atcggtcacc cggataccta
     4981 aaaaacgggt acgcttaacc gccatcctct cctccgatat ccgcaaaatg tgaccgggct
     5041 gaacgctcaa gctctgccat ctgctcccgg cggtaatctt cctcctgtgc ctgacgcatc
     5101 agatttgcca tcactgccgg atgccaggat ctttttttta cgacgagcgg cttcttcttc
     5161 ggcttctgca ttatccctcc ttcgcaaacg ccggacggca cggaaaagtt ttccgggtcg
     5221 ctccggcgtt ggacaagcgc cagcgcgtca gtggtgttag cgggtttcgg ggcgcagccc
     5281 tgaaccagtc acagcgttta cgctgtgtat actggcttac tatgttggca tgagagcacg
     5341 attcatgaaa gtgcctcatg tggcaggtgt gatatgtggc tcaggagcgt ccgcaatacc
     5401 atgcacggac agatgaaatg acgcctcctc gctcactcgg tagctgcgct cctgccgttc
     5461 ggctgcggcg ggcgtgaccg actcacggat aacgggataa agcaaaggcg ctcaaatcag
     5521 aaagggccgg agaaaaggat gcggcgttgc cgtttttcca taggctccgc ctcccctgac
     5581 gagcatcaca gaaatg
//
