LOCUS       CP043608                4411 bp    DNA     circular BCT 21-MAR-2022
DEFINITION  Klebsiella pneumoniae strain WCHKP115038 plasmid p3_115038, complete
            sequence.
ACCESSION   CP043608
VERSION     CP043608.1
DBLINK      BioProject: PRJNA353728
            BioSample: SAMN09688152
KEYWORDS    .
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 4411)
  AUTHORS   Hu,Y., Feng,Y. and Zong,Z.
  TITLE     The complete genome of Klebsiella pneumoniae strain WCHKP115038
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4411)
  AUTHORS   Hu,Y., Feng,Y. and Zong,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-SEP-2019) Center of Infectious Diseases, West China
            Hospital, Sichuan University, Guoxuexiang 37, Chengdu, Sichuan
            610041, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.4.7
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 200.0x
            Sequencing Technology :: Illumina HiSeq; Oxford Nanopore MiniION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/04/2019 17:28:40
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 5,932
            CDSs (total)                      :: 5,810
            Genes (coding)                    :: 5,643
            CDSs (with protein)               :: 5,643
            Genes (RNA)                       :: 122
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 10
            Pseudo Genes (total)              :: 167
            CDSs (without protein)            :: 167
            Pseudo Genes (ambiguous residues) :: 0 of 167
            Pseudo Genes (frameshifted)       :: 51 of 167
            Pseudo Genes (incomplete)         :: 113 of 167
            Pseudo Genes (internal stop)      :: 30 of 167
            Pseudo Genes (multiple problems)  :: 23 of 167
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..4411
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="WCHKP115038"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="p3_115038"
                     /geo_loc_name="China: Chengdu, Sichuan"
                     /collection_date="2018"
     gene            join(3605..4411,1..690)
                     /locus_tag="DVJ44_29640"
     CDS             join(3605..4411,1..690)
                     /locus_tag="DVJ44_29640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000678150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /protein_id="UNM54916.1"
                     /translation="MKGSVAKTGKSFKNRVDYILKDDHDFICSNMASDYNNVSDLTDEF
                     KAVSSFRQDIKKPVFHAFLSLPKNEHLTDEQWQEIAKDYLKEMNINIEKHQYICVRHND
                     TDQDHIHIVANRVGLDGSVWLGQHSAFNTIAACERLEIKHNLTITQGLKGQKSDVSAPT
                     KNEIEQALRTGEKPARIVLQNALQAAMVGKPDLETFIDRLQAVGIDPAFNVASTGNVAG
                     VSFGIKNNEKNIYFKGSQLGKKYSWNTIKGKVKYDKNRDDELIRRFAARKTDDENSIGR
                     SPIEPNINDDRTIIRNDDDTIGIGQYSIKPDTTDTYESKQLVRSNNHSFKLSEKYNRPT
                     DPKVRRTTQKAAQILNRVKKQYNKKSIKPYNQGGINSWRDKSDSGSISRILDHAETANA
                     ATNNFRLKGRGNINSRATKIEEIRSRLGIEKPVIQPKNKEKIVKEEIKKKPLGLSMNEN
                     RFKSKLKETLKKEKPRNETTPTQLQQEDDQHLKPRGFKPR"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            complement(699..974)
                     /locus_tag="DVJ44_29645"
     CDS             complement(699..974)
                     /locus_tag="DVJ44_29645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000125721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH domain-containing protein"
                     /protein_id="UNM54917.1"
                     /translation="MTALHTVKRNKTAKEMAQRLNISDRTVRKLIALPREDYEKEAKQR
                     RLKAFVLREAGFKWSEVGEKLGTTKHGAIALYKRYQQIDAPTTKEA"
                     /name="HTH domain-containing protein"
     gene            complement(978..1844)
                     /locus_tag="DVJ44_29650"
     CDS             complement(978..1844)
                     /locus_tag="DVJ44_29650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000481810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="UNM54918.1"
                     /translation="MFNIENNREILKSQIPLKPYATNDLDFGLTIQNKNKALDMLYLQV
                     NHPLYLHTMVFDLDKENCFYEFENAHLPIPSFITKSPDSGRCHYGYMLNAPISSTEKSR
                     QKPVKFARALYYNMATRLGADLGYAGLITKNPLHSHWSPFWSGADLYELNDLADCFDDL
                     EDPKKRENTELAFGRNVEMFDTQRQWAYKNVLKYKNESSFDAFYKELLLKCETFNSFAN
                     YNNLLPYKELVSTAKSIAKFCWKEFSNEKLHDIQSKKQKARRSKRTEKQKLHTKTLLEK
                     AIMINEE"
                     /name="hypothetical protein"
     gene            2138..2362
                     /locus_tag="DVJ44_29655"
     CDS             2138..2362
                     /locus_tag="DVJ44_29655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016241877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="UNM54919.1"
                     /translation="MHEQKDNKRRLGFMIGKSNATLPADEQTEAELDQEVLKLFYPNQC
                     TKDTIERSEAGTDVFTASGSDDLFKKLKL"
                     /name="hypothetical protein"
     gene            2990..3250
                     /locus_tag="DVJ44_29660"
     CDS             2990..3250
                     /locus_tag="DVJ44_29660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000564493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="UNM54920.1"
                     /translation="MNENDIDQSLLELLARYFYYIDPNEENTAFLEANKDEQDLCYFVA
                     YRYIKENKTQDLIGALKDQKDEDYIKAMKDYVYGGGKYGYR"
                     /name="hypothetical protein"
     gene            3237..3608
                     /gene="mobC"
                     /locus_tag="DVJ44_29665"
     CDS             3237..3608
                     /gene="mobC"
                     /locus_tag="DVJ44_29665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000379199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="plasmid mobilization relaxosome protein MobC"
                     /protein_id="UNM54921.1"
                     /translation="MDTDRKRGRIGLNHEVRRDISIQFRVNKAEFDYLKELVEASGLER
                     GHYIRKEILNSEPVIKRKMPEFEQSLYREIQQQGNNINQIAKKLNTNEDFKQSLAAEAN
                     FAIKQLMKRILKACEVYTV"
                     /name="mobC"
ORIGIN
        1 gcaagaaaaa cagatgacga aaatagtatt ggacgatcac ctattgaacc aaatatcaat
       61 gacgatagaa ccattatcag aaacgatgat gatactatcg gaatcggtca gtacagcatt
      121 aaaccagaca caacagacac ttacgagagt aaacaactcg ttagaagcaa caaccacagc
      181 tttaaactca gcgaaaaata taatagacca acagacccaa aagttagaag aacaacacaa
      241 aaagctgcac aaatactcaa cagagttaaa aaacaataca ataaaaaatc aatcaagcct
      301 tataatcaag gtggcatcaa tagttggcgt gataaatctg atagcggttc tatcagtagg
      361 atacttgatc atgcagaaac agccaacgca gccacgaata actttagact caaaggccgt
      421 ggcaacatca atagtagagc aactaagatc gaagaaataa gaagtagact tggtatagaa
      481 aaaccagtta ttcagccaaa gaataaagaa aaaatagtta aagaagaaat aaagaaaaaa
      541 cctttaggtt tgagtatgaa tgaaaataga tttaaatcga agttaaaaga aacccttaaa
      601 aaagaaaaac caagaaatga aacaacacca acacaactac agcaggaaga cgatcagcat
      661 ttaaaaccaa gaggttttaa accgcgataa aagaggcttt aagcctcttt tgttgttggt
      721 gcgtctattt gttgataacg tttataaaga gctatagccc cgtgttttgt agttcccagc
      781 ttttccccaa cctctgacca tttaaagccc gcttcacgta atacaaaggc ttttaatcgt
      841 ctttgttttg cttctttctc atagtcttca cgaggtaaag caatcaactt tctgacggtt
      901 ctatcactga tatttaatct ttgagccatt tcttttgctg ttttattcct ttttactgta
      961 tgtaatgccg tcatatttta ctcctcgtta atcattattg ctttttctaa aagtgttttt
     1021 gtatgtagct tttgtttttc tgttctttta gatcttcttg ctttctgttt tttactctga
     1081 atatcatgaa gtttttcgtt gctaaactct ttccaacaaa acttagctat actttttgcc
     1141 gttgatacaa gttctttgta aggtaataga ttattatagt tagcaaagct attgaatgtt
     1201 tcgcatttca ataataactc tttataaaaa gcatcgaatg agctttcatt cttatatttt
     1261 agcacatttt tataagccca ttgcctttga gtatcgaaca tctcaacatt acgaccaaaa
     1321 gcaagttctg tattttctcg ctttttaggg tcttctaaat catcaaaaca atcagctaaa
     1381 tcattaagtt cgtataaatc agcaccagac cagaacggcg accaatggct atgcagtggg
     1441 tttttagtaa tcagtcccgc atagccaaga tcagcaccaa gacgagtagc catattgtaa
     1501 tataatgctc tggcaaactt gacaggcttc tgtctgcttt tctctgttga tgagatcgga
     1561 gcattaagca tataaccgta atgacatcta ccagagtctg gtgattttgt tataaaagac
     1621 gggatgggca aatgagcatt ttcaaactcg taaaagcagt tttctttgtc taaatcaaat
     1681 accattgtat gaaggtataa gggatgattt acttgtaaat aaagcatatc taaagcttta
     1741 ttcttatttt gaatagtcaa tccaaaatca agatcattag tagcatatgg ctttaaaggt
     1801 atttgacttt ttaatatctc tctgttattt tctatattga acatttagca gtatcctttc
     1861 tgtaatgccc cgttctctca ctgtcgccaa actaatcgag aacgcgggct tttcttttat
     1921 ttataatctc ttacagtttt actatatcaa aaaaagttgt caatagatcc gtcaaaaaaa
     1981 gttgttaagt aggaagtcta ccaatatcag gtattagacg gagttttggg gacactacac
     2041 cacagcgaag cacaggccga aggctatggc agagtaagtc acactgtaac gtatactaaa
     2101 ctctatgcag gatctggctg tgctggggag gtaagtcatg catgaacaga aggacaacaa
     2161 acggcggtta ggttttatga ttggtaagag caatgcaaca ttgccagcag acgaacaaac
     2221 agaagcagag cttgatcagg aagtcctgaa gctgttttat cctaatcaat gcactaaaga
     2281 caccatagaa cgctcagaag ccggtacaga cgttttcacg gcctccggtt ctgatgacct
     2341 gttcaaaaaa ctgaagctgt agggtagggg agagctggcc atcttcacca gttggaacaa
     2401 accaaacccc ggacacgatg aaaaggccaa ccctcgatgc agtatatact aatatatact
     2461 atagtctgtt gattttatga gcattttaaa cccatagacg ccagcaacag cagaaaagca
     2521 agttttctac tgttctgtcg ccgccgatca aaccccccat tccttaaaat ctgactacca
     2581 agaggtcacg aactttgtca gatttcacgt agcagcagca ttttttacgc aaagctacct
     2641 attacgcaca gctacccatc aagacaatat attatttaca ctatttttta tttgcatttt
     2701 atttgttgtg cagggtattt atttatgtag ccgctatatt gacaaacttt ttagatcagt
     2761 tatttattta aatatagatt gagttcagct ttatttttgt ttttcggaaa ctgaggcaag
     2821 gtgtaatccc gtagccggta ttatacccaa cctttcaggt tgccccctct cacttcgttc
     2881 ggagggttgt taaaagatct acccttccgc ttattcccct atcaagggga agcggtaaaa
     2941 tccggtagtt ttacattgaa tgttataaat atatatagga gtgtttaaaa tgaatgagaa
     3001 tgatatagat cagtccttgc tagaactatt agcaagatat ttttattata tagacccaaa
     3061 tgaagaaaat acagcatttc ttgaagcaaa taaagatgaa caagatttat gttattttgt
     3121 agcttatcgc tatattaaag aaaataaaac tcaagatctt attggtgctt tgaaagatca
     3181 aaaagatgaa gattatatca aagcaatgaa agattatgtt tatggaggtg gtaaatatgg
     3241 atacagatag aaaaagaggg cgtataggat taaatcacga agtacgtaga gatatatcta
     3301 tacagtttag agtaaacaaa gcagagtttg attatttaaa agagcttgtg gaagcatcag
     3361 ggcttgaaag aggtcattac atccgaaaag agattttaaa ctctgaaccc gttataaaaa
     3421 ggaaaatgcc tgagtttgag caatcattat acagagaaat acaacagcaa ggtaataata
     3481 taaatcagat tgctaaaaag ctaaatacga atgaagactt taaacaatct ttagccgcag
     3541 aagctaactt tgccataaag caacttatga aaagaatatt aaaagcttgc gaggtttata
     3601 cagtatgaaa ggaagcgtag ctaagacggg taagtctttt aaaaatagag ttgattacat
     3661 tcttaaagat gaccacgatt ttatatgtag caatatggca agtgattata ataatgttag
     3721 tgatttaact gatgagttta aagctgtaag cagttttagg caagatataa aaaaaccagt
     3781 ttttcacgct tttttatctc ttcccaagaa tgaacattta acagatgaac aatggcaaga
     3841 gatagcaaaa gactatttga aagaaatgaa tattaatata gaaaaacatc aatatatttg
     3901 tgtgcgtcat aacgatacag atcaagacca tatccatata gtagcaaata gagtcggttt
     3961 agacggttca gtatggcttg ggcagcactc agcatttaac acaatagcag cttgtgaacg
     4021 tcttgagata aagcacaact taaccattac acaggggctt aaaggtcaaa aatcagacgt
     4081 atcagcacca accaagaacg agatcgagca agccctccgc actggtgaaa aaccagctcg
     4141 tatcgtgcta cagaacgcat tacaggcggc tatggtagga aaaccagacc ttgagacatt
     4201 catagacaga ctgcaggctg taggcatcga tccggccttc aacgttgcaa gcactggcaa
     4261 cgtcgccgga gtgtcgtttg gtatcaaaaa taatgaaaaa aatatttatt ttaaaggctc
     4321 acagttaggt aaaaaataca gttggaacac tattaaaggt aaggtgaaat atgacaaaaa
     4381 tagagatgat gaactcatta gaagattcgc a
//
