LOCUS       CP043607                5596 bp    DNA     circular BCT 21-MAR-2022
DEFINITION  Klebsiella pneumoniae strain WCHKP115038 plasmid p2_115038, complete
            sequence.
ACCESSION   CP043607
VERSION     CP043607.1
DBLINK      BioProject: PRJNA353728
            BioSample: SAMN09688152
KEYWORDS    .
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 5596)
  AUTHORS   Hu,Y., Feng,Y. and Zong,Z.
  TITLE     The complete genome of Klebsiella pneumoniae strain WCHKP115038
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5596)
  AUTHORS   Hu,Y., Feng,Y. and Zong,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-SEP-2019) Center of Infectious Diseases, West China
            Hospital, Sichuan University, Guoxuexiang 37, Chengdu, Sichuan
            610041, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.4.7
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 200.0x
            Sequencing Technology :: Illumina HiSeq; Oxford Nanopore MiniION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/04/2019 17:28:40
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 5,932
            CDSs (total)                      :: 5,810
            Genes (coding)                    :: 5,643
            CDSs (with protein)               :: 5,643
            Genes (RNA)                       :: 122
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 10
            Pseudo Genes (total)              :: 167
            CDSs (without protein)            :: 167
            Pseudo Genes (ambiguous residues) :: 0 of 167
            Pseudo Genes (frameshifted)       :: 51 of 167
            Pseudo Genes (incomplete)         :: 113 of 167
            Pseudo Genes (internal stop)      :: 30 of 167
            Pseudo Genes (multiple problems)  :: 23 of 167
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..5596
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="WCHKP115038"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="p2_115038"
                     /geo_loc_name="China: Chengdu, Sichuan"
                     /collection_date="2018"
     gene            complement(join(5174..5596,1..87))
                     /locus_tag="DVJ44_29590"
                     /pseudo=""
     CDS             complement(join(5174..5596,1..87))
                     /locus_tag="DVJ44_29590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020325392.1"
                     /note="incomplete; partial on complete genome; missing
                     N-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="mobilization protein"
                     /name="mobilization protein"
     gene            complement(62..607)
                     /locus_tag="DVJ44_29595"
                     /pseudo=""
     CDS             complement(62..607)
                     /locus_tag="DVJ44_29595"
                     /inference="COORDINATES: protein motif:HMM:PF03432.12"
                     /note="incomplete; partial on complete genome; missing
                     N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilisation nuclease domain-containing
                     protein"
                     /name="relaxase/mobilisation nuclease domain-containing
                     protein"
     gene            complement(765..1109)
                     /locus_tag="DVJ44_29600"
     CDS             complement(765..1109)
                     /locus_tag="DVJ44_29600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006122514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="UNM54910.1"
                     /translation="MAVKRTRFLGIRVTDGEYQQLLERCNGRQLAVWMRETCLDTRPAR
                     SLRLPSIDPVLLRQLAGMGNNLNQIARKINGGQWSGADRVQVVAALMAIDAELERLRHA
                     VLEKGADDDR"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            complement(1460..1690)
                     /locus_tag="DVJ44_29605"
                     /pseudo=""
     CDS             complement(1460..1690)
                     /locus_tag="DVJ44_29605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001347451.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /name="hypothetical protein"
     gene            2378..2757
                     /locus_tag="DVJ44_29610"
                     /pseudo=""
     CDS             2378..2757
                     /locus_tag="DVJ44_29610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004198370.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /name="hypothetical protein"
     gene            2783..3328
                     /locus_tag="DVJ44_29615"
     CDS             2783..3328
                     /locus_tag="DVJ44_29615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004197758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="UNM54911.1"
                     /translation="MFFKRYLTEKEIYKAALPIVRLQGRVNTSLRFLSKYSDVNKNGLI
                     ALHLNLLHFISYNIHGVESLKITQAGINKAVQQSPHADEIKNIAQAIGRKGPEYIEGLI
                     RNPWGKKNDNPLIFIMSIEESIKETLNSGYMLYRVAPITEGEAAAFMDVLKQLLLFEDN
                     FRLFGRDLVYKIEKLKIR"
                     /name="hypothetical protein"
     gene            3394..3744
                     /locus_tag="DVJ44_29620"
     CDS             3394..3744
                     /locus_tag="DVJ44_29620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004197756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="UNM54912.1"
                     /translation="MYWLIAFLAFIFPGRSFADGYTAYYRCNGTQEASLTVKDNKLSMV
                     VGLSKFNRQLDTYRFKEKGIEVVMQRAASDDNSEAIMSFIMPDVNNMTLLVKNNGYIIV
                     KTTCWLTKTDKQ"
                     /name="hypothetical protein"
     gene            complement(3814..4080)
                     /locus_tag="DVJ44_29625"
     CDS             complement(3814..4080)
                     /locus_tag="DVJ44_29625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000262326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="UNM54913.1"
                     /translation="MVWTINYSDRALKSLRKMDKQNARRIVDFMSLRIAVAADPRQSGK
                     PLKGELGEFWRYRVGDYRVLCEIRDDELVILAATIGHRREVYD"
                     /name="type II toxin-antitoxin system RelE/ParE family
                     toxin"
     gene            complement(4064..4288)
                     /locus_tag="DVJ44_29630"
     CDS             complement(4064..4288)
                     /locus_tag="DVJ44_29630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000879771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TraY domain-containing protein"
                     /protein_id="UNM54914.1"
                     /translation="MLAIRLSDEIESRLDSLAKQTGRTKTFYAREAILAHLEDLEDYYL
                     SAETAARVRRGDEAVHSSEDVRKSLGLDD"
                     /name="TraY domain-containing protein"
     gene            complement(4955..5167)
                     /gene="mbeD"
                     /locus_tag="DVJ44_29635"
     CDS             complement(4955..5167)
                     /gene="mbeD"
                     /locus_tag="DVJ44_29635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="UNM54915.1"
                     /translation="MTELEKQLLSALEQLQQDYSKRLDEWESAFGEWRKMSGLMQRENA
                     ALSERVTRLSQQVERLSGQLQRLSR"
                     /name="mbeD"
     Typing          complement(1362..1438)
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="91.25"
                     /coverage="98.0"
                     /evalue="1.04e-21"
     Typing          1627..2024
                     /name="rep_cluster_2370"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="89.526"
                     /coverage="91.0"
                     /evalue="3.03e-139"
     Typing          complement(3..775)
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="99.0"
                     /evalue="2.19e-168"
     Typing          complement(4840..5594)
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="99.603"
                     /coverage="99.0"
                     /evalue="6.19e-139"
ORIGIN
        1 tgcggctttc agcatttcgc cggtactctg ctgctgcgct ttcgatttct gctctaagtc
       61 cttcgccagc gttaaaagac tgttcataga tggctccctt aagtcggatg tttcgccctc
      121 cgtccgggtc ggcaatgctg atgctgctct ttgtggtgcg cacgacctca aaacctgcgc
      181 tttccagcgc ctcagtgacg tcctgacgcg ttttaagctc ccctgacgag gcgagggcca
      241 gtaagccccg cgtaatagcc tctgcggctt cctgcttcgt tttgggtaac gaagatggcg
      301 tcaccagcgc gcgccggttc tccggtgcgt tcgggtcgtg cagccccagt cgcccgttca
      361 ccacggtctg ccacgcatcg atgcgcggac ggtctgcccg gtcgtagtac ggctggagac
      421 gcctgccggt cagcagttcc gtgttcggta ccagaaaatt cagttccagc cgccccttgt
      481 cccggtgttc aacccacagc acgctgtact ggtctttatc gagtccgggc atcagaaccc
      541 gctcgaagct cgccatcagc ttttcacgct ggccgggcgg taaatcctgt tcagcaaaag
      601 acaggacgcc ggaggtgtac tttttggcgt agggcgaggc gtcgataagc tcccggacct
      661 cctccggctt tccctgcagg acgatggccc cgtcgcgctg gcggtctttc cccagcagat
      721 aatccaccgg cccggcaccg ccgcctcgcc ctcgcggatg aaacttaacg atcatcgtct
      781 gccccctttt ccagcacggc atgccgcagc cgctcgagtt cggcatcaat ggccatcagc
      841 gcggccacca cctgaacccg gtcagcgcct gaccactggc cgccgttaat tttccgggcg
      901 atctggttga ggttgttccc catcccggca agctggcgca gcaaaaccgg atcgatggac
      961 ggcagccgca acgaccgcgc cgggcgcgta tcgagacagg tttcccgcat ccacaccgcc
     1021 agttgccttc cattgcagcg ctccagcagc tgctggtact ccccatcggt cacccggata
     1081 cctaaaaaac gggtacgctt aaccgccatc ctctcctccg atatccgcaa aatgtgaccg
     1141 ggctgaacgc tcaagctctg ccatctgctc ccggcggtaa tcttcctcct gtgcctgacg
     1201 catcagattt gccatcactg ccggatgcca ggatcttttt tttacgacga gcggcttctt
     1261 cttcggcttc tgcattatcc ctccttcgca aacgccggac ggcacggaaa agttttccgg
     1321 gtcgctccgg cgttggacaa gcgccagcgc gtcagtggtg ttagcgggtt tcggggcgca
     1381 gccctgaacc agtcacagcg tttacgctgt gtatactggc ttactatgtt ggcatgagag
     1441 cacgattcat gaaagtgcct catgtggcag gtgtgatatg tggctcagga gcgtccgcaa
     1501 taccatgcac ggacagatga aatgacgcct cctcgctcac tcggtagctg cgctcctgcc
     1561 gttcggctgc ggcgggcgtg accgactcac ggataacggg ataaagcaaa ggcgctcaaa
     1621 tcagaaaggg ccggagaaaa ggatgcggcg ttgccgtttt tccataggct ccgcctcccc
     1681 tgacgagcat cacagaaatg gacgctcaag tcagaggagg acgaaacccg acaggactta
     1741 aagatgccgg tgatttctct ccggcggctc cctcgtgcgc tctcctgttc cgaccctgcc
     1801 gtttaccgga tacctgttcc gcctttttcc ctttcgggaa gcgtggcgct ttctcatagc
     1861 tcacgctgct ggtatctcgg ctcggtttag gtcgttcgct ccaagctggg ctgtatgcac
     1921 gaaccccccg ttcagcccga ctgctgcgcc ctttccggta actatcatct tgagtccaac
     1981 ccggacggac acgcaaaaac gccactggca gcagccattg gtaactggat atatacgaga
     2041 gagatattga gaggtcttga agtgggtgcc taactgcggc tacactgaaa gaacagtttt
     2101 ggtatctgcg gtctcgtata cccagttacc cggttaagca gttccccaac tgacttaacc
     2161 ttcgatcaaa ccgcctcccc aggcggtttt ttcgtttaca gtgcaagaga ttacgcgcag
     2221 aaaaaaagga tctcaagaag atcctttaaa tgatcgtcag ttctgttatc cccggagctc
     2281 catccatccc acggaaaaac acccgccact gatgccctca gcgcactgca catcatgtac
     2341 aaaccactcc ctccctcctt ttttattgcg tttcttaatg cgcaatggta gctttgtgcg
     2401 caacaaaaaa cgcaatagca agggggggta atgagagaaa gaacaaatat catgctagat
     2461 ataggattaa agcaatcctt acaacggctt tcgaataaaa ccaaaatgag tctaagtgat
     2521 cttattaacc agagattatc aggttcactt tcagttgaag aacgcattgg cgaaaagcct
     2581 gaatggatga gaaaccttga tccctatctc gccaatcact tttcaaatat tgagttaccg
     2641 ctcccttcac cattaaaaga ataccaagaa aaaatggatg agatagattc aattattaat
     2701 gacatgatgg ttctaaagga atatttcaga gctaagtttt acgacgaaat aaaataggca
     2761 cgctatacgg aggcggagaa ttatgttttt taaacggtat ttaacggaga aggaaatata
     2821 caaggcagca ctcccaattg ttaggcttca agggagagtt aacacttcat tacgtttttt
     2881 atccaaatac tcagatgtaa acaaaaatgg attaattgca ttgcatctta atttattaca
     2941 ttttatctca tacaacatac acggtgtaga gtctctgaaa atcactcaag caggcataaa
     3001 caaagctgta caacaaagcc ctcacgcaga tgaaataaaa aatattgcgc aggcaatagg
     3061 acgcaaagga cctgagtaca tcgaaggatt aattagaaac ccatggggga agaaaaatga
     3121 taatccacta atatttataa tgagcattga agaaagtata aaagaaaccc ttaactcagg
     3181 ttatatgtta tatagagtag ctcccataac tgagggtgaa gcagctgctt tcatggatgt
     3241 tcttaaacaa ttattattat ttgaggataa ttttcgcctt tttggtagag acttggttta
     3301 taaaatagaa aaattaaaaa tcagataaca aagtatggtg aacgaaaaat gaaagagagg
     3361 atagtgaaat gtgtaatacc aagattctca actatgtatt ggttaattgc gttcctagca
     3421 tttatattcc ccggtcgatc ttttgctgac ggttacaccg cttactaccg atgtaatggt
     3481 actcaggaag catctcttac tgttaaagat aacaaactaa gtatggttgt aggtctttct
     3541 aagtttaata ggcaactgga tacttataga ttcaaagaaa agggaatcga agtagtaatg
     3601 cagagagctg cttctgatga taactctgag gccataatgt cttttattat gcctgacgtt
     3661 aacaatatga ccttattagt taaaaataac ggctacatta tcgttaagac aacctgctgg
     3721 ttaactaaaa ccgacaaaca gtagaacacg tagttagtcg agtatttacc ataatacctg
     3781 ttgtcggcat caaaaaagcc cgcatagcgg gcttcagtcg taaacttcgc ggcgatgtcc
     3841 aatcgtggcg gcaaggataa caagctcgtc atctcggatc tcacacagaa cgcgataatc
     3901 tcccacccga tagcgccaga actcgcccag ctcacctttg agcggcttcc ctgactggcg
     3961 aggatcggca gcaactgcaa tgcgtaaact cataaaatcc acaatccgtc gtgcgttctg
     4021 tttgtccatc ttgcgtaacg atttgagcgc ccgatcggaa tagttaatcg tccagaccaa
     4081 gtgacttcct cacgtcttca gacgaatgca ctgcttcatc accacggcga acgcgtgcag
     4141 cagtttctgc tgaaagataa taatcctcca ggtcttccag atgcgccagt attgcttccc
     4201 gcgcataaaa cgtctttgtt ctgccggttt gcttcgccag cgagtccaga cgggactcaa
     4261 tctcatcaga taaccggata gcaagcatat aaacctcccg aacaccattt gctatacatg
     4321 tatatcaaca gtaccacaat caacctaaaa gaacaaaaaa taatcttgtt agcccctctt
     4381 gataatccgt aacgcggtca atatatctag cttgagggct ttcctcttaa ctattgaaag
     4441 gataacgatt atgggtctta agccgggtcc gaaacgaatt gccgattcaa caggggaacc
     4501 tgataaacgc cagcgtgaca ataaaaaaac gccgggaaat actgacaaat tgaaacccag
     4561 caaatcttca aaaaaataag tcagtagtta aaagccctcc ggggcttttt tgtatctgcc
     4621 gttcacgctg attaaacata acacccgttg cccgcaccgc cccggacggg ttcgccgcga
     4681 acggggtggc agtcaggtaa aaccggcaac aaaccacccg ataaaccgcc ccgttcgcga
     4741 cagataaatt ttacctggct gcatagccat gcagccaggt gaatgacatc cggtttcagc
     4801 gtaaatgccc gatgagaacc ctgttttcct gcatttcagc ccagcgacgg accgtcatag
     4861 cttcgctgcc gggaacgcgc ttccgtcagt tccttttcgt gctgccgttg ctcgtgcgcc
     4921 cgttctgcgg ccacggccat ctcatgacgc tgcactaccg gctcaaacgc tgcagttgcc
     4981 cgctcaagcg ttccacctgc tgactcaagc gcgtcacgcg ctcgctcagc gccgcgttct
     5041 cccgttgcat aagccctgac attttccgcc attccccgaa ggcgctctcc cactcgtcca
     5101 gccttttcga gtagtcctgc tgtagctgct ctaatgcgct cagcaactgt ttttccagct
     5161 cggtcatcgg cacttactcc ttcaccagtc tcagcgcgtt ctgcttcgac cgcccgttcc
     5221 cgaccgtcca gctctgcgtc ctgtctacgg ccgtcccctt cggcagcacc agaaaacgtc
     5281 cgttgctgtc ttccaggtac gtcacgcccc aggtcttcgc gttcagcttc gacagcgctg
     5341 cgttctgccg gtcgatttcg gccagatttg acgctatcaa gctcccctga taccacaaca
     5401 ccccgctcag gctggcgaac agcagtcctg acaccatcgt gatggtcagc catgtccgcc
     5461 cgaccatacg catcacgctc aggcggttcg actgcatggc cgcgctcata ccctgctcgt
     5521 gggcgcggat ggcggcgctg attctcttcc cgctttcgct cagttccgct ctgacagact
     5581 tctcgtgctc gctgaa
//
