LOCUS       CP043377                4411 bp    DNA     circular BCT 14-MAR-2022
DEFINITION  Klebsiella pneumoniae strain WCHKP090249 plasmid p2_090249, complete
            sequence.
ACCESSION   CP043377
VERSION     CP043377.1
DBLINK      BioProject: PRJNA353728
            BioSample: SAMN12623216
KEYWORDS    .
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 4411)
  AUTHORS   Wei,L., Hu,Y., Feng,Y. and Zong,Z.
  TITLE     The complete genome of Klebsiella pneumoniae strain WCHKP090249
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4411)
  AUTHORS   Wei,L., Hu,Y., Feng,Y. and Zong,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-AUG-2019) Center of Infectious Diseases, West China
            Hospital, Sichuan University, Guoxuexiang 37, Chengdu, Sichuan
            610041, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.4.7
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 200.0x
            Sequencing Technology :: Illumina HiSeq; Oxford Nanopore MiniION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/27/2019 15:03:25
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 5,812
            CDSs (total)                      :: 5,690
            Genes (coding)                    :: 5,515
            CDSs (with protein)               :: 5,515
            Genes (RNA)                       :: 122
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 11
            Pseudo Genes (total)              :: 175
            CDSs (without protein)            :: 175
            Pseudo Genes (ambiguous residues) :: 0 of 175
            Pseudo Genes (frameshifted)       :: 74 of 175
            Pseudo Genes (incomplete)         :: 101 of 175
            Pseudo Genes (internal stop)      :: 46 of 175
            Pseudo Genes (multiple problems)  :: 40 of 175
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..4411
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="WCHKP090249"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="p2_090249"
                     /geo_loc_name="China: Chengdu, Sichuan"
                     /collection_date="2018-05"
     gene            97..594
                     /locus_tag="FYG04_29015"
     CDS             97..594
                     /locus_tag="FYG04_29015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020325392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mobilization protein"
                     /protein_id="UNC85215.1"
                     /translation="MSSLLTASRDFEEKSKAQQQLTEERLKAAFSKHENVVKSELNASA
                     KRINDAISAHEQGMNAAMQSNRLSVLRMVGRTWLTITMVSGLLFASLSGVLWYQGNRIA
                     ANLAEIRQQRDTLSKLQMQTWGVTYLENRNGRFLVLPEGMKAETGRTVDNKTRNAVKLV
                     RE"
                     /name="mobilization protein"
     gene            601..816
                     /gene="mbeD"
                     /locus_tag="FYG04_29020"
     CDS             601..816
                     /gene="mbeD"
                     /locus_tag="FYG04_29020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015328239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="UNC85216.1"
                     /translation="MTELEKQLLSALEQLQQDYSRRLDEWESAFEEWRKMSGLMQRENA
                     ALSERVSGLSRQVQSLSEQLRRLSTG"
                     /name="mbeD"
     gene            1321..1692
                     /locus_tag="FYG04_29025"
     CDS             1321..1692
                     /locus_tag="FYG04_29025"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="UNC85217.1"
                     /translation="MSKKNDLNLSESTLESLREYVDDFGMTVDDVVLKLINENKSLKES
                     LGQDFVLSGEKEAHHFKDYVIHKLPKGKILVTHNGLKASNMKKILIEAGRELGMDENEL
                     NPDFTTYEIGRFLFKHLHA"
                     /name="hypothetical protein"
     gene            complement(1789..2214)
                     /locus_tag="FYG04_29030"
     CDS             complement(1789..2214)
                     /locus_tag="FYG04_29030"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="UNC85218.1"
                     /translation="MSFQQVLNEVKVISSNGDTSLAITRYDQQGLNRFLLRDLSHQTET
                     RSNYVNNLEQLCQQAKCNRVILNVNEISESFYMKLITFCNFTLLDAKQDMQHLNGFNYF
                     IVLNSFDENSGHTVWAPSYSPNCVTERDLDEYDPDRW"
                     /name="hypothetical protein"
     gene            complement(2227..2481)
                     /locus_tag="FYG04_29035"
     CDS             complement(2227..2481)
                     /locus_tag="FYG04_29035"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="UNC85219.1"
                     /translation="MNITINTPSVKTILDVQCDHCNFTGTIDYEAPRISKLTVGGKITF
                     DNALCPQCKTGEIFAPGGQYVRDDATGRMNRTGDANISL"
                     /name="hypothetical protein"
     gene            complement(2736..2869)
                     /locus_tag="FYG04_29040"
                     /pseudo=""
     CDS             complement(2736..2869)
                     /locus_tag="FYG04_29040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001326446.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /name="replication initiation protein"
     gene            complement(2894..3136)
                     /locus_tag="FYG04_29045"
                     /pseudo=""
     CDS             complement(2894..3136)
                     /locus_tag="FYG04_29045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012579059.1"
                     /note="incomplete; partial on complete genome; missing
                     N-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /name="hypothetical protein"
     gene            3056..3301
                     /locus_tag="FYG04_29050"
     CDS             3056..3301
                     /locus_tag="FYG04_29050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001682433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="UNC85222.1"
                     /translation="MSIRFCDARQGGGAYGKTAAPRPFLFLAFTAYVSAFLRVPVTPAA
                     AERQERQRPSERGGVISPAQPLSVLRPAAACHTCHI"
                     /name="hypothetical protein"
     gene            complement(3283..3468)
                     /locus_tag="FYG04_29055"
     CDS             complement(3283..3468)
                     /locus_tag="FYG04_29055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014541879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="UNC85220.1"
                     /translation="MTDGKAFPGRRGVGQAAGASVAFSGFRGAALNQSRSASGVYTGLL
                     CWHWYGYQRKCYIWQV"
                     /name="hypothetical protein"
     gene            3489..3830
                     /locus_tag="FYG04_29060"
     CDS             3489..3830
                     /locus_tag="FYG04_29060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006122514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="UNC85221.1"
                     /translation="MADKRNKMLTMWVTEDEHRRLLERCDGKQLAAWMRQTCLDEKPTR
                     AGRLPSISPALLRQLAGMGNNLNQIARKVNAGGAGHDRVQIVAALMAIDAGLERLRHAV
                     LEKGPDDDC"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            3769..4365
                     /locus_tag="FYG04_29065"
                     /pseudo=""
     CDS             3769..4365
                     /locus_tag="FYG04_29065"
                     /inference="COORDINATES: protein motif:HMM:PF03432.12"
                     /note="incomplete; partial on complete genome; missing
                     C-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilisation nuclease domain-containing
                     protein"
                     /name="relaxase/mobilisation nuclease domain-containing
                     protein"
     Typing          3220..3395
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="82.32"
                     /coverage="100.0"
                     /evalue="5.910000000000001e-33"
     Typing          complement(2758..3274)
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="90.962"
                     /coverage="99.0"
                     /evalue="0.0"
     Typing          4..932
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="99.355"
                     /coverage="99.0"
                     /evalue="0.0"
     Typing          3821..4410
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="99.0"
                     /evalue="1.13e-125"
ORIGIN
        1 cagcggccgg ttttgaggtg gtcagaacca caaaaaacag tatcagcatt gccgacccgg
       61 acggggggcg aaatatccga ctgaggggag ccatttatga gcagtctttt aacggcctcg
      121 agggacttcg aggagaaatc gaaagcacag cagcagctta ccgaagagag gctgaaagcc
      181 gcattcagca agcacgagaa cgttgtcaaa tcggaactga acgcaagcgc gaagagaatc
      241 aacgacgcca tcagcgccca cgaacagggg atgaacgcgg cgatgcagtc gaaccggctg
      301 agcgtgctgc gaatggtcgg gcggacgtgg ctgaccatca ccatggtgtc agggctgctg
      361 ttcgccagcc tgagcggggt gctgtggtac caggggaacc ggatagcggc gaacctggcg
      421 gaaatcaggc agcagagaga tacgctgtcg aaactgcaga tgcagacgtg gggcgtgacc
      481 tatctggaga accgcaacgg acggtttctg gtgctgccgg aggggatgaa agccgaaacg
      541 ggccggacgg tggacaacaa gacgcggaac gcggtgaagc tggtacggga gtagagcaga
      601 atgacggaac tggaaaaaca attgctgagc gcgttagagc agctacagca ggactactcg
      661 agaaggctgg acgagtggga gagcgccttc gaggaatggc ggaagatgtc tggtcttatg
      721 caacgggaga acgcggcgct gagcgagcgc gtgtcgggct tgagcaggca ggtgcagagt
      781 ttgagcgagc agctgcgccg gttatcgaca ggctgaatga gattgagcaa cagcgatacg
      841 ggcaaagaac ggaaaaggaa ccagagaaga cagcagatct ggtaccggaa cggcaacgca
      901 cattatctca tggtgacagg gagtatggag actgataaac gcccgtctca ggtggcctga
      961 gcgtgacggg gatcatggcc attttctgcg atttcagcac acagagagtc ttttttaacc
     1021 gaaatcaccg gctatgcagt gatgtgaata agtgatgcat atgcgtaaaa taaatcaggt
     1081 gcgtttctgg tggttttcgg tgtacttgcc accacctttt gcccgtcagc catcagaaac
     1141 gccctgagtg cctccggcgc ggtgcgggta agagatgtta tggtaaatcc agcggtgtag
     1201 ctgttctttt tgaaccagcg atcagtgact tctatgttgc ttgttcaata ctaaaaatat
     1261 gtgtactata ctacttgtgt tgtttttttc ttttctgaca actagcatag tggtgactac
     1321 atgagtaaaa aaaacgattt aaacctcagt gaatcaacgt tagaaagcct cagggagtat
     1381 gtcgatgact tcggcatgac tgttgatgat gttgttctga agttaattaa tgagaataag
     1441 tcattgaagg aatcacttgg acaagacttt gtgttatctg gcgaaaagga agcgcaccac
     1501 tttaaagatt atgtgattca taaactgccc aaaggaaaaa ttctggttac ccataatggg
     1561 cttaaggcca gcaacatgaa gaagatattg attgaggcgg ggagggagct aggcatggat
     1621 gaaaatgaac tcaatccaga tttcacaacc tatgagatag ggcgtttttt gtttaagcac
     1681 ctacatgcgt aacaatcctg cacgcctgaa gggcaggaat cgaacttagc tgcccggatg
     1741 ttatggtaaa tttaggtgct atacggattt tttattaggc gatctgagtt accaacgatc
     1801 tgggtcgtat tcatctaaat cgcgctcagt tacacaattg gggctatacg atggtgccca
     1861 aactgtatgc ccactgtttt catcaaaaga attaagaaca ataaagtaat tgaagccatt
     1921 caaatgttgc atatcttgtt tggcgtctaa cagagtgaaa ttacaaaaag ttattaattt
     1981 catataaaac gactctgaaa tttcattcac gttcaaaata accctgttac attttgcctg
     2041 ctggcataat tgctcaagat tatttacata gttactacga gtctcggtct gatgagataa
     2101 gtcacgtaaa agaaaacggt tcaatccttg ttggtcatat ctggtaatcg ctaggcttgt
     2161 atcaccattg cttgaaataa cctttacctc attcaaaact tgctgaaaac tcatatgata
     2221 agttccttat agactaatgt tcgcatcgcc tgtgcgattc attcttccag tagcatcatc
     2281 tctaacgtat tgaccacctg gagcgaaaat ttcacctgtt ttacattgcg ggcataaagc
     2341 attgtcgaag gttatttttc cgccgacagt aagctttgaa attcgagggg cttcataatc
     2401 aatagtgcca gtgaagttac agtgatcaca ctgtacatca aggatggttt ttactgacgg
     2461 ggtattgata gttatattca ttctcaacaa tccttatcat tacaagtggt tgtgatgact
     2521 ttatcagaga atgcttagct aatgaaaacg aaggatcttc ttgagatcgt gttcctctcg
     2581 tcgtagtctt cattcctgta aacgaaaaaa ccgcccagca aggcggtttt ttcgaaggtt
     2641 cttggagcag caactctttg aaccgaggta actggcttgg aggagcgcag tcaccaaatc
     2701 tgtcctttca gtttagcctt aaccggcgca taacttcaag actcaactcc tctaaatccg
     2761 ttacctgtgg ccgttgccat tggcgctttg tatgtctttc cgggttggac tcaagacgat
     2821 agttaccgga taaggcgcag cggtcggact gaacgggggg ttcgtgcata cagtccagct
     2881 tggagcgaac tgcctacccg gaactgagtg tcaggcgtgg aatgagaaaa acgcggccat
     2941 aacagcggaa tgacaccggt aaaccgaaag gcaggaacag gagagcgcac gagggagcta
     3001 ccagggggaa acgcctggga tctttatagt cctgtcgggt ttcgccacca ctgatttgag
     3061 catcagattc tgtgatgctc gtcagggggg cggagcctat ggaaaaacgg cagcgccgcg
     3121 tccttttctc ttccttgcct tcacggcata tgtctctgca tttctccgcg tgccggttac
     3181 gcccgccgca gccgaacggc aggagcgtca gcgaccgagt gagcgaggag gcgtcatatc
     3241 tcctgcacaa ccattatctg tcttacgccc ggcagctgca tgtcatacct gccatatata
     3301 gcactttcgc tgatacccat accaatgcca acatagtaag ccagtataca ctccgctagc
     3361 gctacgtgac tggttcaggg ctgcgccccg aaacccgcta aaagccactg acgcgcctgc
     3421 ggcttgtcca accccgcgcc gaccgggaaa ggctttcccg tccgtcacgg cgttatcagg
     3481 aggcgattct ggcagataaa cgcaacaaga tgctcacgat gtgggtgacg gaagacgaac
     3541 accggcggtt gcttgagcgg tgcgacggaa aacaactggc ggcgtggatg cgccagacct
     3601 gccttgatga gaaaccgaca cgcgccggca ggcttccctc gatttcgccc gcgctgctgc
     3661 gtcagcttgc tggcatgggc aataacctga accagatcgc ccggaaagtg aacgccggtg
     3721 gtgccggtca tgaccgggtg cagatcgtgg cagcgctgat ggcgatcgat gccggtctgg
     3781 aacggttgcg gcatgccgta ctggaaaaag ggccggacga tgattgttaa attccatccc
     3841 cggggtcgcg gcgggggcgc cggtcctgtg gattatcttc tgggtaaaga ccggcagcgt
     3901 gaaggtgcca gcgtcctgca ggggaagccg gaagaagtcc gggagctgat tgatgcgtcg
     3961 ccgtatgtga aaaaatatac ctcgggggtg ctgtcattcg cggaggcgga cctgccgccg
     4021 ggtcagcgtg aaaaactgat ggccagcttt gagcgggttc tgatgcccgg actcgataaa
     4081 gatcagtaca gcattctgtg ggtggaacac gcagacaagg gtcgtcttga gctgaatttt
     4141 ctgatcccca ataccgaatt actgacgggg aaacgcctcc agccgtatta cgatcgtgcc
     4201 gaccggccgc gcatcgatgc gtggcagaca gtggtcaacg gcaggctggg gctacatgat
     4261 ccgaacgacc cggagaaccg gcgggcgctg gtcacgccgt caggactgcc agaaacgaag
     4321 caggaagccg cagagacgat tacacggggt ttgctgatgt tagcctcatc aggagagctg
     4381 aaaacgcgtg atgacgtcac aggggcgctc a
//
