LOCUS       CP043376                5541 bp    DNA     circular BCT 14-MAR-2022
DEFINITION  Klebsiella pneumoniae strain WCHKP090249 plasmid p1_090249, complete
            sequence.
ACCESSION   CP043376
VERSION     CP043376.1
DBLINK      BioProject: PRJNA353728
            BioSample: SAMN12623216
KEYWORDS    .
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 5541)
  AUTHORS   Wei,L., Hu,Y., Feng,Y. and Zong,Z.
  TITLE     The complete genome of Klebsiella pneumoniae strain WCHKP090249
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5541)
  AUTHORS   Wei,L., Hu,Y., Feng,Y. and Zong,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-AUG-2019) Center of Infectious Diseases, West China
            Hospital, Sichuan University, Guoxuexiang 37, Chengdu, Sichuan
            610041, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.4.7
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 200.0x
            Sequencing Technology :: Illumina HiSeq; Oxford Nanopore MiniION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/27/2019 15:03:25
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 5,812
            CDSs (total)                      :: 5,690
            Genes (coding)                    :: 5,515
            CDSs (with protein)               :: 5,515
            Genes (RNA)                       :: 122
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 11
            Pseudo Genes (total)              :: 175
            CDSs (without protein)            :: 175
            Pseudo Genes (ambiguous residues) :: 0 of 175
            Pseudo Genes (frameshifted)       :: 74 of 175
            Pseudo Genes (incomplete)         :: 101 of 175
            Pseudo Genes (internal stop)      :: 46 of 175
            Pseudo Genes (multiple problems)  :: 40 of 175
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..5541
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="WCHKP090249"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="p1_090249"
                     /geo_loc_name="China: Chengdu, Sichuan"
                     /collection_date="2018-05"
     gene            complement(join(5466..5541,1..1766))
                     /locus_tag="FYG04_28985"
     CDS             complement(join(5466..5541,1..1766))
                     /locus_tag="FYG04_28985"
                     /inference="COORDINATES: protein motif:HMM:PF02534.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV secretion system DNA-binding
                     domain-containig protein"
                     /protein_id="UNC85213.1"
                     /translation="METFNYLINIVFSSLVTIYFFLVPFGGFLSVFLGLIYLTANLEKR
                     QKLQSLGLLSLVIGLINPLGYFWIPLLRSYVYSVDYELLFPLGFLALTLGSAFLGFAAW
                     LGWTRYCVPFINKYLHQFTRRTELERNRKTDVREIEKFLPTAKLDYNPDKWLSVDPKKT
                     GLFAGINELGKPIFIPYEKWRSAHVQIVGTSGFGKGVATGILLSQAMRAGETVIVFDPK
                     NDEWAPHVLRQSAEQAEVPFYLVDLESDFGQLDLLAGATAFEIEELLSAGFSLGDSGDI
                     ADHYRLKDRAAIRNISQLVNAGARTVADLAYSELANSYEKECEGAIFKLRELALCRAIS
                     GVGGIDMKTVVKNGGCLYIIGSMDNSRLMMAQKMLLVRLQQIVKKRDRITETPRPVCAF
                     LDEVKYLLSRKSLEGLGAARDKGLHFVLTHQSLGDLKDCPRDLNPEAVVGAIVENCSIR
                     IAYRVQNPDTALWLAKMTGEIQVDDETRRVERNAGGAELLSHERTIRQSTRNLIDTNML
                     LNLPGRTAVVFGSGQPQFAHICPILAEKKPLTVYVAPEPVVPVVEPLIPAPAVTTVPVE
                     KNSKPKPQPKKTVPIETRNYEDDDMHDYLQEYNNADF"
                     /name="type IV secretion system DNA-binding
                     domain-containig protein"
     gene            2725..3159
                     /locus_tag="FYG04_28990"
     CDS             2725..3159
                     /locus_tag="FYG04_28990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001233485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="UNC85214.1"
                     /translation="MKRVGQIDLDTGEEIGSFVAVIRPKQKSTFQRHFTMNQAALLTIA
                     NELNHEQMRVLMALLAELDYENYIQVAQTDISVALQMQKTNVSRAIKNLLEFGIILEGP
                     RIGRSKTYRLNPQFGWKGTVSNHKKALKNGLSVIQGGRAV"
                     /name="hypothetical protein"
     gene            complement(3228..3509)
                     /locus_tag="FYG04_28995"
     CDS             complement(3228..3509)
                     /locus_tag="FYG04_28995"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="UNC85209.1"
                     /translation="MKKAIFSLIVTLGLTACAGKPTGDITLLSDPNGGNEVKTYRMGYT
                     CYVHYNPQNYRSADVLRGVDTCGEMVGATNSEKFLKYRADVESKLSNS"
                     /name="hypothetical protein"
     gene            complement(3520..4416)
                     /locus_tag="FYG04_29000"
     CDS             complement(3520..4416)
                     /locus_tag="FYG04_29000"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="UNC85210.1"
                     /translation="MKNKFLYVALAASITAGCDQSSPAGASVSSGESSTQEQTQQVQRN
                     KQISTGQGANNITETAAFPLIQRAIADIYPNLPYEVGVNFCGPAREGKKIEEVTESLKS
                     EIGATEYSEYLKLVDGVTNINLACAVSLVRFSVNPINGWVIGQTYTDQAKVLLAVSIAS
                     SKVLSPIAVEISKKPGMNEKELTSLIQNRFMDDNEAVFYEMRNELQKNRNYVIDATGVK
                     GIHFTTSDGYDVIGNGNGVTVSNYGTTWYGSGYIEGNFYKVSTISSRAINMTKDNTITS
                     GSSISSGESSSADISTK"
                     /name="hypothetical protein"
     gene            complement(4419..4748)
                     /locus_tag="FYG04_29005"
     CDS             complement(4419..4748)
                     /locus_tag="FYG04_29005"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="UNC85211.1"
                     /translation="MPSPLAIMAVIAPSALLGAFLFFFVYDEHSTKNDIQRDKHQLETM
                     KFDRDFSNAWNGDSVTPPKENDIASMEEKIKMKEEKAKKEKEERERRIKKIQNDVEHTI
                     AKSGE"
                     /name="hypothetical protein"
     gene            complement(4748..5521)
                     /locus_tag="FYG04_29010"
     CDS             complement(4748..5521)
                     /locus_tag="FYG04_29010"
                     /inference="COORDINATES: protein motif:HMM:PF13814.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="UNC85212.1"
                     /translation="MRTMICTTIYRNITMLISDPTERRLASESKRLKILKFLRDEIWSS
                     ANVLAAVAGLQSAQAIHKTLTQLERDGMVRRHLFPIAGRVTKTIWGITPHGLAHAWSDD
                     EQYEDRPRFEPSKLVLARVPHQLDMQEARLKAEASGWGEWVRGERLGFKPAIRPDAMTV
                     SPKGLKVAVELERTIKTKLRYQVIIREHLRAIRTGQWQVVVYITPDGMPLRLKRIFDSI
                     DYVSINGQHEILSDKHRNLFRFISLSDWPSMEKSI"
                     /name="hypothetical protein"
ORIGIN
        1 actgtttttt taggttgagg tttaggtttc gaattctttt ccaccggtac agtggttaca
       61 gctggggcag ggattagtgg ctcgactacc ggcacaaccg gttcaggtgc tacgtaaact
      121 gtcagaggtt ttttttcggc cagaatcggg caaatatgcg cgaattgggg ttgaccagag
      181 ccaaaaacca cagcggttct gccaggtaga tttaacagca tgtttgtatc gatcaggttc
      241 cgggttgact gcctgatagt gcgttcgtgg ctgagcagct cagctccgcc cgcgttccgc
      301 tcaacccgcc gcgtttcatc atcaacctga atttcaccag tcattttagc cagccagagc
      361 gccgtatcag ggttttgaac tctgtaggca atacgaatcg agcagttttc aacaatggcc
      421 cctacaacag cctcagggtt caaatcccgg gggcagtctt tcaggtcgcc gagtgattga
      481 tgagtaagga caaaatgcag ccccttatcc cgggcagcgc ctaggccctc cagagatttt
      541 ctggacagaa ggtacttaac ctcatccaga aaagcacaga caggccgcgg tgtttctgta
      601 atccggtcgc gttttttaac gatctgttgc aggcgcacca acagcatttt ttgggccatc
      661 atcagtcggg aattgtccat cgagccgatg atgtacaggc accctccgtt tttaacaacc
      721 gtcttcatgt caataccacc aacaccagaa atggcgcggc atagagccag ttcacgcagt
      781 ttgaaaatcg cgccctcgca ttctttttcg tatgagtttg ctagctcgct gtaggccaaa
      841 tcagccacag ttcgcgcgcc ggcgttaacc agctgcgaaa tgttccggat agcagcgcga
      901 tctttcagcc tgtagtggtc ggcaatatcc ccggaatccc cgagggagaa cccggcagaa
      961 agcagttctt caatttcaaa tgcagtagcc ccggccagca ggtccagttg gccgaaatcg
     1021 gactccagat caaccaggta gaacggcact tcagcctgtt cggcggactg cctcaaaacg
     1081 tggggtgccc attcgtcgtt tttagggtca aaaacaataa cagtttcccc tgcccgcata
     1141 gcctgcgaca gcaaaatccc agttgccacc cctttaccaa acccggacgt accaacaatc
     1201 tggacgtggg cggaacgcca tttctcgtag gggatgaaaa ttggtttacc cagctcatta
     1261 atcccggcaa acaggcctgt ttttttagga tctacagaga gccatttatc cgggttgtag
     1321 tccaattttg cagtaggtag aaatttttca atctcgcgaa cgtcggtttt tcggttacgc
     1381 tccagttcag tccgccgggt gaactggtgc aaatatttgt tgatgaacgg gacacaatac
     1441 ctagtccatc ccagccatgc tgcgaacccc agaaatgcag atcccagagt taacgccaga
     1501 aacccaaggg gaaacagcag ctcataatca acgctgtaga cataagatcg cagcaacggt
     1561 atccagaaat agcctagcgg gttaattaat ccgattacca gagacagcag acccagagac
     1621 tgcaattttt gccgtttttc caggttggca gttaggtaaa ttagccccaa aaaaacgctc
     1681 aaaaaaccac caaatgggac caaaaaaaag taaatagtga ccaatgaaga aaaaactata
     1741 tttatcagat agttaaatgt ttccattgtt taaatcatcc agaggcatca acgagaaaaa
     1801 aggatgccct ggtgctgatc atctgtccag ttaaaattcg tacaggacca gaaagcgggg
     1861 gagcgtagcg aggggcggca gcccccactg gtgcctatgg tgcaagagcc aggcggctcg
     1921 aagcacaacc ggcgttccac cgtcccccgg acggtagccg gttgcatggg ggggccgacc
     1981 accaaaaatg gccccagcca ttttagcgct gcccacagcg cggtggtgag ttgggggcgt
     2041 agcccgccgt cagaggagcg cgagcgacgc ttgaccccgg ggattaacca gactcgttca
     2101 gaggctaggt gaatttccgg ggtcaagcgt agcgagacgg ccccgggtga atggtgctga
     2161 ttgtgagggc ctccccgaac aatcagtgcc agagggcgaa gccctccaga tgtgagcggc
     2221 gtccagccga tcgcgtctgg ttgtcttttc tggttgatag cgaatgtcca agagcatcaa
     2281 ccagaggagt tgccagcaac tccggcagtt aaaagcgctg ctcaggcagg tggatggctc
     2341 actgcgtgaa ccctccaccc ctgtaaagcg tgcttttcgg tgcagtcgtc aacgactaaa
     2401 tcggaaccca ccgcaaagcg gcgggtcccc acgatttagc cattgacgaa tttagttggg
     2461 agacaaaacg gcagaggagg aaccgctcgc cgcagccgaa cgaccgagcg tagcgagtta
     2521 gtgagcgagg aagcggaatt tcacctgtcc gggcataaga atcaatacgc tctgatgcct
     2581 aaaaatggcc gtgtgcgtgt gcgcacgtat ataagataca gaaggggcta tccgggaagc
     2641 cgcgccaatg ctggattttt tttgacaata gttatctctc aagataactt agttatctct
     2701 caagataact atcagggtag attcatgaaa agggtgggac agatcgatct cgatacaggt
     2761 gaggagatcg ggtcattcgt tgcagtaatc agacctaagc aaaaatcgac atttcagagg
     2821 cattttacga tgaatcaagc cgccctcctg accattgcaa acgagctgaa ccatgagcaa
     2881 atgcgcgttt taatggcact gttagccgag ctcgattacg aaaactacat acaggtagcc
     2941 caaacagata tctcagtagc gctccagatg cagaagacca acgttagccg agcgattaaa
     3001 aaccttctgg agtttggcat catccttgag gggcctagga tcggacgttc aaaaacatat
     3061 cggctaaacc ctcagttcgg ttggaaaggg actgtgagta atcacaaaaa ggccctcaaa
     3121 aacggcctga gcgtcattca gggcggccgg gcggtataat ccatggtagg agtcaccaga
     3181 gggccttaaa acgattctag ggccctctga ggcgttttta gccgctatca ggagttgctc
     3241 agtttagatt ccacatcggc cctgtatttc aggaattttt ccgagttagt ggcaccaacc
     3301 atctccccgc aggtgtccac accgcgcaga acgtccgctg aacggtagtt ctgtgggtta
     3361 tagtgaacgt aacaggtgta ccccatgcgg taggttttaa cctcattccc gccgttaggg
     3421 tcagaaagta acgtaatatc cccggtaggt tttccggcgc aggcagttaa acccagagtt
     3481 acaatcagag aaaatatagc ttttttcatt tcctaatcct tatttagtgc ttatatctgc
     3541 ggatgagctt tctccgctgg aaatagaact tccagaggtg attgtgttgt cttttgtcat
     3601 gtttattgcc ctgctactga tagtggaaac tttatagaag ttcccttcta tatatccgct
     3661 cccataccag gtggtgccat agttagaaac tgtcacacca ttgccgttac caatcacatc
     3721 atatccatca gaagttgtga aatgaatccc ctttacacca gttgcatcta ttacataatt
     3781 tctgtttttc tgtaactcat tacgcatttc ataaaaaaca gcttcattat catccataaa
     3841 cctgttttga attaatgacg ttaattcttt ttcattcatg cccggttttt ttgaaatttc
     3901 tacagctatc ggagatagta ccttggagga tgcgatagag actgcaagta aaacctttgc
     3961 ttggtcagta tatgtctggc cgatgaccca tccatttata gggttaacag aaaatctaac
     4021 caaagaaact gcacaggcaa gatttatatt ggttacaccg tcgactagtt tcaaatattc
     4081 agagtattca gtagcgccaa tctcactctt taatgattcg gtaacctctt caattttctt
     4141 tccttcccgc gcaggaccac aaaaattaac cccaacctca taagggaggt tggggtagat
     4201 atcagcaatt gcccgttgaa tcaaggggaa agcagcagtt tcggtaatat tgttagcgcc
     4261 ctgccccgta gatatctgtt tgtttcgctg aacctgttgc gtttgttcct gcgtgctgct
     4321 ctcccccgag ctgacgctag ctccagctgg agaactctga tcgcagccag cagtaataga
     4381 cgcagcaagt gctacataca aaaatttatt tttcatcttt actccccaga ttttgctatt
     4441 gtgtgctcaa cgtcgttctg aattttttta attctacgtt ctctttcttc tttttctttt
     4501 tttgctttct cctccttcat ttttattttt tcttccatgc tggcgatgtc attttctttt
     4561 ggtggtgtga cgctgtcacc attccatgca ttagagaaat cgcggtcgaa tttcatggtt
     4621 tcgagttggt gcttgtctcg ctgtatatcg ttctttgtac tgtgttcgtc atagacgaag
     4681 aaaaacaaaa acgcccccag aagcgcggag ggtgcaatta cagccatgat tgctaatgga
     4741 ctcggcatta aatagatttc tccatgctgg gccagtctga aaggctaatg aatctgaata
     4801 gattccggtg tttgtcagat aagatctcat gctgaccatt aatagaaaca taatcaatag
     4861 agtcaaaaat tcgttttaga cgcaggggca ttccatcagg agtaatgtat acaacaacct
     4921 gccactgacc tgtcctgata gccctgaggt gctccctaat aatgacctga tagcgcagct
     4981 tagttttgat tgtcctctcc agctctaccg cgacctttag cccttttggg cttacagtca
     5041 ttgcgtcagg gcgaatagcc ggtttaaacc caaggcgctc ccctctcacc cactcacccc
     5101 agccgctagc ctcagccttt aacctggcct cttgcatgtc taactggtgc ggaacccgcg
     5161 ccagaaccag ttttgatggt tcgaatcgtg gtcggtcttc gtactgctca tcatcactcc
     5221 acgcatgggc tagcccgtgc ggagtgattc cccagattgt tttagttaca cggccagcta
     5281 tcgggaagag gtgccgtctg accattccgt ccctctccag ctgcgtgagc gttttatgga
     5341 ttgcctgagc actttgtagt ccagctacag cagcgaggac gttggcagaa ctccagattt
     5401 catccctgag aaatttaaga attttcagtc gcttactttc agacgcaagg cggcgctctg
     5461 tcggatcaga aatcagcatt gttatattcc tgtagatagt cgtgcatatc atcgtcctca
     5521 tagttccgag tttctatcgg c
//
