LOCUS       CP043372                5596 bp    DNA     circular BCT 14-MAR-2022
DEFINITION  Klebsiella pneumoniae strain WCHKP090050 plasmid p2_090050, complete
            sequence.
ACCESSION   CP043372
VERSION     CP043372.1
DBLINK      BioProject: PRJNA353728
            BioSample: SAMN09842417
KEYWORDS    .
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 5596)
  AUTHORS   Wei,L., Long,H., Feng,Y. and Zong,Z.
  TITLE     The complete genome of Klebsiella pneumoniae strain WCHKP090050
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5596)
  AUTHORS   Wei,L., Long,H., Feng,Y. and Zong,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-AUG-2019) Center of Infectious Diseases, West China
            Hospital, Sichuan University, Guoxuexiang 37, Chengdu, Sichuan
            610041, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.4.7
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 200.0x
            Sequencing Technology :: Illumina HiSeq; Oxford Nanopore MiniION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/27/2019 13:20:26
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 5,727
            CDSs (total)                      :: 5,605
            Genes (coding)                    :: 5,460
            CDSs (with protein)               :: 5,460
            Genes (RNA)                       :: 122
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 11
            Pseudo Genes (total)              :: 145
            CDSs (without protein)            :: 145
            Pseudo Genes (ambiguous residues) :: 0 of 145
            Pseudo Genes (frameshifted)       :: 47 of 145
            Pseudo Genes (incomplete)         :: 95 of 145
            Pseudo Genes (internal stop)      :: 26 of 145
            Pseudo Genes (multiple problems)  :: 20 of 145
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..5596
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="WCHKP090050"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="p2_090050"
                     /geo_loc_name="China: Chengdu, Sichuan"
                     /collection_date="2018"
     gene            complement(join(5520..5596,1..148))
                     /locus_tag="D0S94_28595"
     CDS             complement(join(5520..5596,1..148))
                     /locus_tag="D0S94_28595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000879771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TraY domain-containing protein"
                     /protein_id="UNC79641.1"
                     /translation="MLAIRLSDEIESRLDSLAKQTGRTKTFYAREAILAHLEDLEDYYL
                     SAETAARVRRGDEAVHSSEDVRKSLGLDD"
                     /name="TraY domain-containing protein"
     gene            complement(815..1027)
                     /gene="mbeD"
                     /locus_tag="D0S94_28600"
     CDS             complement(815..1027)
                     /gene="mbeD"
                     /locus_tag="D0S94_28600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="UNC79635.1"
                     /translation="MTELEKQLLSALEQLQQDYSKRLDEWESAFGEWRKMSGLMQRENA
                     ALSERVTRLSQQVERLSGQLQRLSR"
                     /name="mbeD"
     gene            complement(1034..1543)
                     /locus_tag="D0S94_28605"
     CDS             complement(1034..1543)
                     /locus_tag="D0S94_28605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020325392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mobilization protein"
                     /protein_id="UNC79636.1"
                     /translation="MNSLLTLAKDLEQKSKAQQQSTGEMLKAAFSEHEKSVRAELSESG
                     KRISAAIRAHEQGMSAAMQSNRLSVMRMVGRTWLTITMVSGLLFASLSGVLWYQGSLIA
                     SNLAEIDRQNAALSKLNAKTWGVTYLEDSNGRFLVLPKGTAVDRTQSWTVGNGRSKQNA
                     LRLVKE"
                     /name="mobilization protein"
     gene            complement(1518..2282)
                     /locus_tag="D0S94_28610"
                     /pseudo=""
     CDS             complement(1518..2282)
                     /locus_tag="D0S94_28610"
                     /inference="COORDINATES: protein motif:HMM:PF03432.12"
                     /note="incomplete; partial on complete genome; missing
                     C-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilisation nuclease domain-containing
                     protein"
                     /name="relaxase/mobilisation nuclease domain-containing
                     protein"
     gene            complement(2221..2565)
                     /locus_tag="D0S94_28615"
     CDS             complement(2221..2565)
                     /locus_tag="D0S94_28615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006122514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="UNC79637.1"
                     /translation="MAVKRTRFLGIRVTDGEYQQLLERCNGRQLAVWMRETCLDTRPAR
                     SLRLPSIDPVLLRQLAGMGNNLNQIARKINGGQWSGADRVQVVAALMAIDAELERLRHA
                     VLEKGADDDR"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            complement(2916..3146)
                     /locus_tag="D0S94_28620"
                     /pseudo=""
     CDS             complement(2916..3146)
                     /locus_tag="D0S94_28620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001347451.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /name="hypothetical protein"
     gene            3834..4213
                     /locus_tag="D0S94_28625"
                     /pseudo=""
     CDS             3834..4213
                     /locus_tag="D0S94_28625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004198370.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /name="hypothetical protein"
     gene            4239..4784
                     /locus_tag="D0S94_28630"
     CDS             4239..4784
                     /locus_tag="D0S94_28630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004197758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="UNC79638.1"
                     /translation="MFFKRYLTEKEIYKAALPIVRLQGRVNTSLRFLSKYSDVNKNGLI
                     ALHLNLLHFISYNIHGVESLKITQAGINKAVQQSPHADEIKNIAQAIGRKGPEYIEGLI
                     RNPWGKKNDNPLIFIMSIEESIKETLNSGYMLYRVAPITEGEAAAFMDVLKQLLLFEDN
                     FRLFGRDLVYKIEKLKIR"
                     /name="hypothetical protein"
     gene            4850..5200
                     /locus_tag="D0S94_28635"
     CDS             4850..5200
                     /locus_tag="D0S94_28635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004197756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="UNC79639.1"
                     /translation="MYWLIAFLAFIFPGRSFADGYTAYYRCNGTQEASLTVKDNKLSMV
                     VGLSKFNRQLDTYRFKEKGIEVVMQRAASDDNSEAIMSFIMPDVNNMTLLVKNNGYIIV
                     KTTCWLTKTDKQ"
                     /name="hypothetical protein"
     gene            complement(5270..5536)
                     /locus_tag="D0S94_28640"
     CDS             complement(5270..5536)
                     /locus_tag="D0S94_28640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000262326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="UNC79640.1"
                     /translation="MVWTINYSDRALKSLRKMDKQNARRIVDFMSLRIAVAADPRQSGK
                     PLKGELGEFWRYRVGDYRVLCEIRDDELVILAATIGHRREVYD"
                     /name="type II toxin-antitoxin system RelE/ParE family
                     toxin"
     Typing          complement(2818..2894)
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="91.25"
                     /coverage="98.0"
                     /evalue="1.04e-21"
     Typing          3083..3480
                     /name="rep_cluster_2370"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="89.526"
                     /coverage="91.0"
                     /evalue="3.03e-139"
     Typing          complement(700..2231)
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="99.804"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 cagtttctgc tgaaagataa taatcctcca ggtcttccag atgcgccagt attgcttccc
       61 gcgcataaaa cgtctttgtt ctgccggttt gcttcgccag cgagtccaga cgggactcaa
      121 tctcatcaga taaccggata gcaagcatat aaacctcccg aacaccattt gctatacatg
      181 tatatcaaca gtaccacaat caacctaaaa gaacaaaaaa taatcttgtt agcccctctt
      241 gataatccgt aacgcggtca atatatctag cttgagggct ttcctcttaa ctattgaaag
      301 gataacgatt atgggtctta agccgggtcc gaaacgaatt gccgattcaa caggggaacc
      361 tgataaacgc cagcgtgaca ataaaaaaac gccgggaaat actgacaaat tgaaacccag
      421 caaatcttca aaaaaataag tcagtagtta aaagccctcc ggggcttttt tgtatctgcc
      481 gttcacgctg attaaacata acacccgttg cccgcaccgc cccggacggg ttcgccgcga
      541 acggggtggc agtcaggtaa aaccggcaac aaaccacccg ataaaccgcc ccgttcgcga
      601 cagataaatt ttacctggct gcatagccat gcagccaggt gaatgacatc cggtttcagc
      661 gtaaatgccc gatgagaacc ctgttttcct gcatttcagc ccagcgacgg accgtcatag
      721 cttcgctgcc gggaacgcgc ttccgtcagt tccttttcgt gctgccgttg ctcgtgcgcc
      781 cgttctgcgg ccacggccat ctcatgacgc tgcactaccg gctcaaacgc tgcagttgcc
      841 cgctcaagcg ttccacctgc tgactcaagc gcgtcacgcg ctcgctcagc gccgcgttct
      901 cccgttgcat aagccctgac attttccgcc attccccgaa ggcgctctcc cactcgtcca
      961 gccttttcga gtagtcctgc tgtagctgct ctaatgcgct cagcaactgt ttttccagct
     1021 cggtcatcgg cacttactcc ttcaccagtc tcagcgcgtt ctgcttcgac cgcccgttcc
     1081 cgaccgtcca gctctgcgtc ctgtctacgg ccgtcccctt cggcagcacc agaaaacgtc
     1141 cgttgctgtc ttccaggtac gtcacgcccc aggtcttcgc gttcagcttc gacagcgctg
     1201 cgttctgccg gtcgatttcg gccagatttg acgctatcaa gctcccctga taccacaaca
     1261 ccccgctcag gctggcgaac agcagtcctg acaccatcgt gatggtcagc catgtccgcc
     1321 cgaccatacg catcacgctc aggcggttcg actgcatggc cgcgctcata ccctgctcgt
     1381 gggcgcggat ggcggcgctg attctcttcc cgctttcgct cagttccgct ctgacagact
     1441 tctcgtgctc gctgaatgcg gctttcagca tttcgccggt actctgctgc tgcgctttcg
     1501 atttctgctc taagtccttc gccagcgtta aaagactgtt catagatggc tcccttaagt
     1561 cggatgtttc gccctccgtc cgggtcggca atgctgatgc tgctctttgt ggtgcgcacg
     1621 acctcaaaac ctgcgctttc cagcgcctca gtgacgtcct gacgcgtttt aagctcccct
     1681 gacgaggcga gggccagtaa gccccgcgta atagcctctg cggcttcctg cttcgttttg
     1741 ggtaacgaag atggcgtcac cagcgcgcgc cggttctccg gtgcgttcgg gtcgtgcagc
     1801 cccagtcgcc cgttcaccac ggtctgccac gcatcgatgc gcggacggtc tgcccggtcg
     1861 tagtacggct ggagacgcct gccggtcagc agttccgtgt tcggtaccag aaaattcagt
     1921 tccagccgcc ccttgtcccg gtgttcaacc cacagcacgc tgtactggtc tttatcgagt
     1981 ccgggcatca gaacccgctc gaagctcgcc atcagctttt cacgctggcc gggcggtaaa
     2041 tcctgttcag caaaagacag gacgccggag gtgtactttt tggcgtaggg cgaggcgtcg
     2101 ataagctccc ggacctcctc cggctttccc tgcaggacga tggccccgtc gcgctggcgg
     2161 tctttcccca gcagataatc caccggcccg gcaccgccgc ctcgccctcg cggatgaaac
     2221 ttaacgatca tcgtctgccc ccttttccag cacggcatgc cgcagccgct cgagttcggc
     2281 atcaatggcc atcagcgcgg ccaccacctg aacccggtca gcgcctgacc actggccgcc
     2341 gttaattttc cgggcgatct ggttgaggtt gttccccatc ccggcaagct ggcgcagcaa
     2401 aaccggatcg atggacggca gccgcaacga ccgcgccggg cgcgtatcga gacaggtttc
     2461 ccgcatccac accgccagtt gccttccatt gcagcgctcc agcagctgct ggtactcccc
     2521 atcggtcacc cggataccta aaaaacgggt acgcttaacc gccatcctct cctccgatat
     2581 ccgcaaaatg tgaccgggct gaacgctcaa gctctgccat ctgctcccgg cggtaatctt
     2641 cctcctgtgc ctgacgcatc agatttgcca tcactgccgg atgccaggat ctttttttta
     2701 cgacgagcgg cttcttcttc ggcttctgca ttatccctcc ttcgcaaacg ccggacggca
     2761 cggaaaagtt ttccgggtcg ctccggcgtt ggacaagcgc cagcgcgtca gtggtgttag
     2821 cgggtttcgg ggcgcagccc tgaaccagtc acagcgttta cgctgtgtat actggcttac
     2881 tatgttggca tgagagcacg attcatgaaa gtgcctcatg tggcaggtgt gatatgtggc
     2941 tcaggagcgt ccgcaatacc atgcacggac agatgaaatg acgcctcctc gctcactcgg
     3001 tagctgcgct cctgccgttc ggctgcggcg ggcgtgaccg actcacggat aacgggataa
     3061 agcaaaggcg ctcaaatcag aaagggccgg agaaaaggat gcggcgttgc cgtttttcca
     3121 taggctccgc ctcccctgac gagcatcaca gaaatggacg ctcaagtcag aggaggacga
     3181 aacccgacag gacttaaaga tgccggtgat ttctctccgg cggctccctc gtgcgctctc
     3241 ctgttccgac cctgccgttt accggatacc tgttccgcct ttttcccttt cgggaagcgt
     3301 ggcgctttct catagctcac gctgctggta tctcggctcg gtttaggtcg ttcgctccaa
     3361 gctgggctgt atgcacgaac cccccgttca gcccgactgc tgcgcccttt ccggtaacta
     3421 tcatcttgag tccaacccgg acggacacgc aaaaacgcca ctggcagcag ccattggtaa
     3481 ctggatatat acgagagaga tattgagagg tcttgaagtg ggtgcctaac tgcggctaca
     3541 ctgaaagaac agttttggta tctgcggtct cgtataccca gttacccggt taagcagttc
     3601 cccaactgac ttaaccttcg atcaaaccgc ctccccaggc ggttttttcg tttacagtgc
     3661 aagagattac gcgcagaaaa aaaggatctc aagaagatcc tttaaatgat cgtcagttct
     3721 gttatccccg gagctccatc catcccacgg aaaaacaccc gccactgatg ccctcagcgc
     3781 actgcacatc atgtacaaac cactccctcc ctcctttttt attgcgtttc ttaatgcgca
     3841 atggtagctt tgtgcgcaac aaaaaacgca atagcaaggg ggggtaatga gagaaagaac
     3901 aaatatcatg ctagatatag gattaaagca atccttacaa cggctttcga ataaaaccaa
     3961 aatgagtcta agtgatctta ttaaccagag attatcaggt tcactttcag ttgaagaacg
     4021 cattggcgaa aagcctgaat ggatgagaaa ccttgatccc tatctcgcca atcacttttc
     4081 aaatattgag ttaccgctcc cttcaccatt aaaagaatac caagaaaaaa tggatgagat
     4141 agattcaatt attaatgaca tgatggttct aaaggaatat ttcagagcta agttttacga
     4201 cgaaataaaa taggcacgct atacggaggc ggagaattat gttttttaaa cggtatttaa
     4261 cggagaagga aatatacaag gcagcactcc caattgttag gcttcaaggg agagttaaca
     4321 cttcattacg ttttttatcc aaatactcag atgtaaacaa aaatggatta attgcattgc
     4381 atcttaattt attacatttt atctcataca acatacacgg tgtagagtct ctgaaaatca
     4441 ctcaagcagg cataaacaaa gctgtacaac aaagccctca cgcagatgaa ataaaaaata
     4501 ttgcgcaggc aataggacgc aaaggacctg agtacatcga aggattaatt agaaacccat
     4561 gggggaagaa aaatgataat ccactaatat ttataatgag cattgaagaa agtataaaag
     4621 aaacccttaa ctcaggttat atgttatata gagtagctcc cataactgag ggtgaagcag
     4681 ctgctttcat ggatgttctt aaacaattat tattatttga ggataatttt cgcctttttg
     4741 gtagagactt ggtttataaa atagaaaaat taaaaatcag ataacaaagt atggtgaacg
     4801 aaaaatgaaa gagaggatag tgaaatgtgt aataccaaga ttctcaacta tgtattggtt
     4861 aattgcgttc ctagcattta tattccccgg tcgatctttt gctgacggtt acaccgctta
     4921 ctaccgatgt aatggtactc aggaagcatc tcttactgtt aaagataaca aactaagtat
     4981 ggttgtaggt ctttctaagt ttaataggca actggatact tatagattca aagaaaaggg
     5041 aatcgaagta gtaatgcaga gagctgcttc tgatgataac tctgaggcca taatgtcttt
     5101 tattatgcct gacgttaaca atatgacctt attagttaaa aataacggct acattatcgt
     5161 taagacaacc tgctggttaa ctaaaaccga caaacagtag aacacgtagt tagtcgagta
     5221 tttaccataa tacctgttgt cggcatcaaa aaagcccgca tagcgggctt cagtcgtaaa
     5281 cttcgcggcg atgtccaatc gtggcggcaa ggataacaag ctcgtcatct cggatctcac
     5341 acagaacgcg ataatctccc acccgatagc gccagaactc gcccagctca cctttgagcg
     5401 gcttccctga ctggcgagga tcggcagcaa ctgcaatgcg taaactcata aaatccacaa
     5461 tccgtcgtgc gttctgtttg tccatcttgc gtaacgattt gagcgcccga tcggaatagt
     5521 taatcgtcca gaccaagtga cttcctcacg tcttcagacg aatgcactgc ttcatcacca
     5581 cggcgaacgc gtgcag
//
