LOCUS       CP043022                5718 bp    DNA     circular BCT 26-AUG-2019
DEFINITION  Escherichia coli strain 397404_gen plasmid unnamed3, complete
            sequence.
ACCESSION   CP043022
VERSION     CP043022.1
DBLINK      BioProject: PRJNA315192
            BioSample: SAMN12598953
KEYWORDS    .
SOURCE      Escherichia coli
  ORGANISM  Escherichia coli
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Escherichia.
REFERENCE   1  (bases 1 to 5718)
  AUTHORS   Greig,D.R., Byrne,L., Kaindama,L., Aird,H., Jorgensen,F., Stoker,K.,
            Reaney,S., Jenkins,C., Dallman,T.J. and Gally,D.L.
  TITLE     Application of short and long-read sequencing during the
            investigation a small cluster of cases of Shiga Toxin-producing
            Escherichia coli O157:H7
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5718)
  AUTHORS   Greig,D.R., Jenkins,C. and Dallman,T.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-AUG-2019) Gastrointestinal Bacteria Reference Unit,
            Public Health England, 61 Colindale Avenue, London, London NW9 5EQ,
            United Kingdom
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method        :: Canu v. 1.6
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 62x
            Sequencing Technology  :: Oxford Nanopore MiniION
            ##Genome-Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..5718
                     /organism="Escherichia coli"
                     /mol_type="genomic DNA"
                     /strain="397404_gen"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:562"
                     /plasmid="unnamed3"
                     /geo_loc_name="United Kingdom"
                     /collection_date="2017"
                     /collected_by="Gastrointestinal Bacteria Reference Unit,
                     Public Health England"
     Typing          2..930
                     /name="rep_cluster_2141"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="91.505"
                     /coverage="100.0"
                     /evalue="0.0"
     Typing          1756..2837
                     /name="MOBQ"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 atgagcgccg tacttcaact cttcagggaa aaattaccgc acaaaccgta ctgtacgaac
       61 gatttcacgt acggcgttcg cattctaccg aaagatatcg ccatccttgc ccgtttcatc
      121 cagcagaacc agccacatgc gcagcactgg ctggcctttg acgttgaccg gacgggggca
      181 gcgatcgact ggagcgaccg gaactgtccg gccccgaaca tcaccgtaaa aaatccacgt
      241 aacgggcacg cgcatctgct ctacgcgctc actcttccgg tgagaaccgc gccggatgca
      301 tcggcttcgg cgctcaaata cgctgccgtg attgagcgtg cgctgtgtga aaaactgggc
      361 gcggatgtga actacagcgg cctgatctgc aaaaatccgt tccaccagga atggcaggtg
      421 gtggaatggc gttgggaact ctataccctc gacgaactgg cggattatct tgatttgagc
      481 gcctcagcgc gccgtcgcgt cgataaagat tacgggatgg ggcgaaactg gtatctgttc
      541 gaaaagggcc gtaaatggtc ttacagggcg attcgtcagg gctggccagc attctcaccg
      601 tggcttgatg cagtgattca gcgtgtcgaa atgtacaacg catcgcttcc cgttccgctt
      661 tctccggctg aatgtcgggc tattggcaag agtattgcga aatacaccta ccgcaaattc
      721 tctcctgaag gcttttccgc ggtacaggct gctcgaggtc gtaagggcgg taatgcaaat
      781 tcatcagaaa atcaggctat taaaggtcag aaatcaaagc gtgtagccgt tgccacatcg
      841 gcacgaactc tgaagccgtg ggtgacgtta gggatcagtc gtgccacata ctatcgaaaa
      901 ctaaaatgtg atccagatct cgcaaaatga gaccagataa caagccttat cagataacag
      961 cgcctgtagg cgtttttttg agcgggtagg tttggggtga tttcccgtgt ttcgtttggc
     1021 aatggtttta gcgtctgtgt gtgagtggtg gttgtgctcg ccgcagtctc aatgaccgag
     1081 cgtagcgagc gaatgagcga ggaagcacca gggaaccgga acgtgaacgg aggctcttac
     1141 gcactgtctt tggtgagtag ctctttcccg cgtttttccc attcctgcca ttttggatgg
     1201 ttgcgcggta gctctgcgat tcctgcgagt gcgcctacca gttcggcagc actaaacttt
     1261 ggttttccgg ttttgctgtc caccagtcct gccacaatca tgaggcctgc ggccttgtag
     1321 agttcatgat cccgcgcctt tcgttccgcc cttgcggctg ccttccgttc tgccgctatt
     1381 attgccgtta ccctggcttt tgctgcggct gctttctctg cggttttttc tgcccgtatc
     1441 agtgcggaca acgttttttc atccgtcgtt gttcggtttt ttttctctgc cagtaacaca
     1501 agtaatcttt gctgctctga cggtgatttc agtccgttga tataggcaat ttttgcactt
     1561 aaccactctt cacgatttgt cattcttacc tctgcacttt tgccgttaat gtgagttgtt
     1621 attgtgcata atatcacctt gtctgcctgc gtgtgagacc ttaaaatcat ccctgattaa
     1681 ttcagggatg cgcacttaga cgtttctctc cttcgtcgag aaacagtgcg ctcctgcgga
     1741 gggcttaacg gcagatggca agctaccatt gtacagttaa aactggagca aaaggcgtag
     1801 ccttaaaaca tgctgattat atttctagat ccggcgaata taagaactac aaatcgcggg
     1861 aggatctgga attttcgtca tccggtaaca tgccatcatg ggcgaagaaa aatcccgcag
     1921 agctatggaa agcagcagat gaatttgaac gaaaaaacgg gacggcatac cgtgaaattg
     1981 agatcgcatt accgcgagaa ctgacacgcg aacaacggat agaacttgtt gaagatttcg
     2041 tgcaaaagga gcttggtgat cgccatgcct atcagtacgc gatccacaat ccgccaggtg
     2101 caatcgacgg aaaggaacaa ccacacgcac atatcatgtt ttgcgagcgg attaatgatg
     2161 gtattgaacg cgatccgcag cagtttttta aacgtgccaa cagcaaatca ccggagcggg
     2221 gaggtgcaaa aaaggcacgc tttggtgaga caccacaaga gcgaaaatca gccttggttg
     2281 cgctacgttc tcactgggct gatgtgcaga atgaacacct tgcgcggcac ggccatcagt
     2341 cgcgcgttga tcatcgttca ctgaaagaac agggtatcaa gcgcacaccg gaagttcatc
     2401 ttggtcccgt tcgtgttgct gttatgaatg ctgatcaggt ttgtgcaatt ctggcacgga
     2461 gaaacgcgga acgggagaag ctagaagcag agcaggaacg ggacagcatc attgacctta
     2521 aaacgacctt gaaggaagcg ttagctgaac gggataacat accaccaagc ctggatgagc
     2581 ttggggcaga attgaaggcg tttgttgaaa gctcgtttga tgaactcaat gaggtaatgc
     2641 agcttaattc attgattaac ggtgcgctgg actcaatgat gaagcaattc caggtggaag
     2701 aggagcggaa gttgcaacag gaacgactaa ttgaagccga aaagcaaaga gacctggaga
     2761 gggaaagaga aagagtgcgc cagcgtgcgt attcctcacc agcaccatca cgttcacgtg
     2821 attatggtat gagccgttaa gcactggagg tttttatttt atgcaattgg atgaacattc
     2881 aagaaaaatt gctgctcttg ttgcgtataa tgataaacaa ataaaagaaa tgaacaggct
     2941 aattactctg cttaatgaaa gagtgaatga cttaaatacc tttacaagta ctcttgaacg
     3001 tgaaggtaaa gttgtttctg gaatttctta ttcctttagg gatagtgtgt ctaatgttaa
     3061 attttatatt aataaaggaa tggatgaggc atcttgtaaa ttacagaaat cagtctcaga
     3121 tacactaacg tcattactcc gcgaaaaatt atctttcact ctcaatgatg taaagaaaga
     3181 gtgggttgat ttcgaggagc aaacaagtaa agagataaag gaatcattaa agcagacgac
     3241 cagagaggcc gaagttgcga caggtataat tagaaaaaca atggagaagt atacagtaac
     3301 aaggattgtc gaaaaggtaa ttgtgttgat tgtattattt ttattgctaa tgatcgctcc
     3361 tgttttctat gctgaatatc tcaaaatgaa tattagttcg ctaatggaag aacagaaaaa
     3421 acatgaatcc atgttaaaag aatggaaaga aaaagctcca ttggccgagt tctcgaagtg
     3481 tggagattat cgtaaagcat gcgtgttagt tgatgacgaa agcggatatt attttaatga
     3541 acaatcacca aataaaaaat atgccatact gaaatagtgt taagtaactc atgccgtctt
     3601 atgactaagg ctgcatgagt ataaaaacgg cgtttcacgt aaaaataaaa taaatacctg
     3661 tacctaatat aaaaatggaa ctacatatgc ttatgtatct tgagaatgat ggcgtcaatt
     3721 tatcccttat cgttaagcta atagctatgt aaataagatc tgttaggaat gatataaata
     3781 taaataaaac acccaatata aaaaagttta atgtgatatt tgtattatta tctataaagg
     3841 ttggtattaa cgcagcaaag aaaagatacg ccttggggtt taataatggt atcaaaaaag
     3901 gtttttgctc ttttctttgt ttgttttttt tattaattaa acccattaat cctatgtata
     3961 ttaaatagcc tccaccgaat atttttataa tgtgaaaatg ttgttctgtg ctggatgttg
     4021 aggataacgc gaaaagagat attgccatga cgatagtctc gccaattctt atgtatatac
     4081 ttgtttttat tgatgacttt aatccatgtg aaaaggcatt gtttataacc aatgcaacgc
     4141 caggccctat tgatatagtt tgcgataagg ttacgatagc aaatgataat aatgttgaat
     4201 attccatgtt tacttaccat gatatatttc gtgggagctt ttcatataca tattccatag
     4261 gaattgcagc tttcggtaat aaatttataa atgttgatat gtgttttagt gaattgctgg
     4321 cggcgattga gtaaaaattt ccgctattcc aatatattga tgcgtattta aaatgttgtt
     4381 taattgcgga aagcatatcg tcaacactaa cttcattcaa attcattgtg tttagtacga
     4441 tttccttttt ggtgttaatc tcatctttcg agaaatacct ttgtttgaat gaataatctt
     4501 tttggatttc tctttttttg atattcatca tgttctgaac tatgtttttc tgtaaatatg
     4561 aaaataccat cattatttaa tagccttttt acgtggttta tttgcccaga tctgttaggt
     4621 gagtacattt gaaatgtggt gtcttctatt ataatatcga atccttgatt aaattgttta
     4681 agatttgaat tttttagtct ttcctctaac aggaaaaatg gagtgcaaat aaaataagcg
     4741 ttttcacttg agccatactt aaaaaatgca tgttcatttt cttttgttgg actggttgtt
     4801 aatgtttgta tgtttccttt tgataattct gaaatggttc ttgccattgc gccctcagcc
     4861 ataccaagac accatgtgtt taattttttg tttagcgtga ttgcgtattt tattactgtt
     4921 gttcctaatc tgcactcttc ttccttgctg tatggtatac tgcaaaaata atgattaacg
     4981 aaagggccgc tgttttttgt gaggtgtttg gcaaacttaa tgtaatcata agaatgaaaa
     5041 agccgatcat ctatttctac tagtctaaaa ggtttgtgtt tttcccctga tgcagttgat
     5101 gagaaaaatt ctgccatgcc gtttattctc ggagcggaaa tacattcatt tataaaatta
     5161 ttcattttcc tatcctctgg tttgattttt ggaatttgtt gttatgactc ttcaatgcta
     5221 attctcttgt aagctttttt acacgccata aacacgatta tgatgtttta tattgtcgat
     5281 atttcgttgt ccagactgga tatgtttgga aatttgtttt catgcgggtt agttcagctg
     5341 gctttctgga tgagaaagtt tgctgttttg accagttcgc gcttctgaag gggtgaaacc
     5401 gatcattaat cgcttttgtg catagttatg caggccccta aaaacgattc tgacgcgttt
     5461 tttgtgtttt ccctaggttt atcttgtctt ttttgagttt tttgcgtcag aaagcgattg
     5521 agagcgtttt agagggtacg tacaagagga gttatggtaa atgggtctgg ttttcgggaa
     5581 ggatcgacag gatttgccgt tgggtgtagt gtaaccaact gaaaaacaaa cgcccctgaa
     5641 attcgtgccg atccgccaag actgtcacga aaattcaagg ggcgtgtggg tcgtaacaca
     5701 cggaggaaat cctaacac
//
