LOCUS       CP043021                5641 bp    DNA     circular BCT 26-AUG-2019
DEFINITION  Escherichia coli strain 397404_gen plasmid unnamed2, complete
            sequence.
ACCESSION   CP043021
VERSION     CP043021.1
DBLINK      BioProject: PRJNA315192
            BioSample: SAMN12598953
KEYWORDS    .
SOURCE      Escherichia coli
  ORGANISM  Escherichia coli
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Escherichia.
REFERENCE   1  (bases 1 to 5641)
  AUTHORS   Greig,D.R., Byrne,L., Kaindama,L., Aird,H., Jorgensen,F., Stoker,K.,
            Reaney,S., Jenkins,C., Dallman,T.J. and Gally,D.L.
  TITLE     Application of short and long-read sequencing during the
            investigation a small cluster of cases of Shiga Toxin-producing
            Escherichia coli O157:H7
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5641)
  AUTHORS   Greig,D.R., Jenkins,C. and Dallman,T.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-AUG-2019) Gastrointestinal Bacteria Reference Unit,
            Public Health England, 61 Colindale Avenue, London, London NW9 5EQ,
            United Kingdom
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method        :: Canu v. 1.6
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 62x
            Sequencing Technology  :: Oxford Nanopore MiniION
            ##Genome-Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..5641
                     /organism="Escherichia coli"
                     /mol_type="genomic DNA"
                     /strain="397404_gen"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:562"
                     /plasmid="unnamed2"
                     /geo_loc_name="United Kingdom"
                     /collection_date="2017"
                     /collected_by="Gastrointestinal Bacteria Reference Unit,
                     Public Health England"
     Typing          complement(465..1133)
                     /name="rep_cluster_2141"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="89.121"
                     /coverage="91.0"
                     /evalue="0.0"
     Typing          complement(4271..5283)
                     /name="MOBQ"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="98.817"
                     /coverage="94.0"
                     /evalue="0.0"
ORIGIN
        1 gtggtaacgg caataataat agcggcagaa cggaaggcag ccgcaagggc ggaacgaaag
       61 gcgcgggatc atgaactcta caaggccgca ggcctcatga ttgtggcagg actggtggac
      121 agcaaaaccg gaaaaccaaa gtttagtgct gccgaactgg taggcgcact cgcaggaatc
      181 gcagagctac cgcgcaacca tccaaaatgg tgggaaaacg cgggaaagag ctactcacca
      241 aagacagtgc gtaagagcct ccgttcacgt tccggttccc tggtgcttcc tcgcttcatt
      301 cttgctcgct acgctcggtc attgagactg cggcgagcac aaccaccact cacacacaga
      361 cgctaaaacc attgccaaac gaaacacggg aaatcacccc aaacctaccc gctcaaaaaa
      421 acgcctacag gcgctgttat ctgataaggc ttgttatctg gtctcatttt gcgagatctg
      481 gatcacattt tagttttcga tagtatgtgg cacgactgat ccctaacgtc acccacggct
      541 tcagagttcg tgccgatgtg gcaacggcta cacgctttga tttctgacct ttaatagcct
      601 gattttctga tgaatttgca ttaccgccct tacgacctcg agcagcctgt accgcggaaa
      661 agccttcagg agagaatttg cggtaggtgt atttcgcaat actcttgcca cagcccgaca
      721 ttcagccgga gaaagcggaa cgggaagcga tgcgttgtac atttcgacac gctgaatcac
      781 tgcatcaagc cacggtgaga atgctggcca gccctgacga atcgccctgt aagaccattt
      841 acggcccttt tcgaacagat accagtttcg ccccatcccg taatctttat cgacgcgacg
      901 gcgcgctgag gcgctcaaat caagataatc cgccagttcg tcgagggtat agagttccca
      961 acgccattcc accacctgcc attccccggt ggaacggatt tttgcagatc aggccgctgt
     1021 agttcacatc cgcgcccagt ttttcacaca gcgcacgctc aatcacggca gcgtatttga
     1081 gcgccgaagc cgatgcatcc ggcgcggttc tcaccggaag agtgagcgcg tagtgccccc
     1141 gtccggtcaa cgtcaaaggc cagccagtgc tgcgcatgtg gctggttctg ctggatgaaa
     1201 cgggcaagga tggcgatatc tttcggtaga atgcgaacgc cgtacgtgaa atcgttcgta
     1261 cagtacggtt tgtgcggtaa tttttccctg aagagttgaa gtacggcgct catgtgttag
     1321 gatttcctcc gtgtgttacg acccacacgc cccttgaatt ttcgtgacag tcttggcgga
     1381 tcggcacgaa tttcaggggc gtttgttttt cagttggtta cactacaccc aacggcaaat
     1441 cctgtcgatc cttcccgaaa accagaccca tttaccataa ctcctcttgt acgtaccctc
     1501 taaaacgctc tcaatcgctt tctgacgcaa aaaactcaaa aagacaagat aaacctaggg
     1561 aaaacacaaa aaacgcgtca gaatcgtttt taggggcctg cataactatg cacaaaagcg
     1621 attaatgatc ggtttcaccc cttcagaagc gcgaactggt caaaacagca aactttctca
     1681 tccagaaagc cagctgaact aacccgcatg aaaacaaatt tccaaacata tccagtctgg
     1741 acaacgaaat atcgacaata taaaacatca taatcgtgtt tatggcgtta tgtaaaaaaa
     1801 aaagcttaca agagaattag cattgaagag tcataacaac aaattccaaa aatcaaacca
     1861 gaggatagga aaatgaataa ttttataaat gaatgtattt ccgctccgag aataaacggc
     1921 atggcagaat ttttctcatc aactgcatca ggggaaaaac acaaaccttt tagactagta
     1981 gaaatagatg atcggctttt tcattcttat gattacatta agtttgccaa acacctcaca
     2041 aaaaacagcg gccctttcgt taatcattat ttttgcagta taccatacag caaggaagaa
     2101 gagtgcagat taggaacaac agtaataaaa tacgcaatca cgctaaacaa aaaattaaac
     2161 acatggtgtc ttggtatggc tgagggcgca atggcaagaa ccatttcaga attatcaaaa
     2221 ggaaacatac aaacattaac aaccagtcca acaaaagaaa atgaacatgc atttttttaa
     2281 gtatggctca agtgaaaacg cttattttat ttgcactcca tttttcctgt tagaggaaag
     2341 actaaaaaat tcaaatctta aacaatttaa tcaaggattc gatattataa tagaagacac
     2401 cacatttcaa atgtactcac ctaacagatc tgggcaaata aaccacgtaa aaaggctatt
     2461 aaataatgat ggtattttca tatttacaga aaaacatagt tcagaacatg atgaatatca
     2521 aaaaagagaa atccaaaaag attattcatt caaacaaagg tatttctcga aagatgagat
     2581 taacaccaaa aaggaaatcg tactaaacac aatgaatttg aatgaagtta gtgttgacga
     2641 tatgctttcc gcaattaaac aacattttaa atacgcatca atatattgga atagcggaaa
     2701 tttttactca atcgccgcca gcaattcact aaaacacata tcaacattta taaatttatt
     2761 accgaaagct gcaattccta tggaatatgt atatgaaaag ctcccacgaa atatatcatg
     2821 gtaagtaaac atggaatatt caacattatt atcatttgct atcgtaacct tatcgcaaac
     2881 tatatcaata gggcctggcg ttgcattggt tataaacaat gccttttcac atggattaaa
     2941 gtcatcaata aaaacaagta tatacataag aattggcgag actatcgtca tggcaatatc
     3001 tcttttcgcg ttatcctcaa catccagcac agaacaacat tttcacatta taaaaatatt
     3061 cggtggaggc tatttaatat acataggatt aatgggttta attaataaaa aaaacaaaca
     3121 aagaaaagag caaaaaacct tttttgatac cattattaaa ccccaaggcg tatcttttct
     3181 ttgctgcgtt aataccaacc tttatagata ataatacaaa tatcacatta aactttttta
     3241 tattgggtgt tttatttata tttatatcat tcctaacaga tcttatttac atagctatta
     3301 gcttaacgat aagggataaa ttgacgccat cattctcaag atacataagc atatgtagtt
     3361 ccatttttat attaggtaca ggtatttatt ttatttttac gtgaaacgcc gtttttatac
     3421 tcatgcagcc ttagtcataa gacggcatga gttacttaac actatttcag tatggcatat
     3481 tttttatttg gtgattgttc attaaaataa tatccgcttt cgtcatcaac taacacgcat
     3541 gctttacgat aatctccaca cttcgagaac tcggccaatg gagctttttc tttccattct
     3601 tttaacatgg attcatgttt ttttctgttc ttccattagc gaactaatat tcattttgag
     3661 atattcagca tagaaaacag gagcgatcat tagcaataaa aataatacaa tcaacacaat
     3721 taccttttcg acaatccttg ttactgtata cttctccatt gtttttctaa ttatacctgt
     3781 cgcaacttcg gcctctctgg tcgtctgctt taatgattcc tttatctctt tacttgtttg
     3841 ctcctcgaaa tcaacccact ctttctttac atcattgaga gtgaaagata atttttcgcg
     3901 gagtaatgac gttagtgtat ctgagactga tttctgtaat ttacaagatg cctcatccat
     3961 tcctttatta atataaaatt taacattaga cacactatcc ctaaaggaat aagaaattcc
     4021 agaaacaact ttaccttcac gttcaagagt acttgtaaag gtatttaagt cattcactct
     4081 ttcattaagc agagtaatta gcctgttcat ttcttttatt tgtttatcat tatacgcaac
     4141 aagagcagca atttttcttg aatgttcatc caattgcata aaataaaaac ctccagtgct
     4201 taacggctca taccataatc acgtgaacgt gatggtgctg gtgaggaata cgcacgctgg
     4261 cgcactcttt ctcttccctc tccagtctct ttgcttttcg gcttcaatta gtcgttcctg
     4321 ttgcaacttc cgctcctctt ccacctggaa ttgcttcatc attgagtcca gcgcaccgtt
     4381 aatcaatgaa ttaagctgca ttacctcatt gagttcatca aacgagcttt caacaaacgc
     4441 cttcaattct gccccaagct catccaggct tggtggtatg ttatcccgtt cagctaacgc
     4501 ttccttcaag gtcgttttaa ggtcaatgat gctgtcccgt tcctgctctg cttctagctt
     4561 ctcccgttcc gcgtttctcc gtgccagaat tgcacaaacc tgatcagcat tcataacagc
     4621 aacacgaacg ggaccaagat gaacttccgg tgtgcgcttg ataccctgtt ctttcagtga
     4681 acgatgatca acgcgcgact gatggccgtg ccgcgcaagg tgttcattct gcacatcagc
     4741 ccagtgagaa cgtagcgcaa ccaaggctga ttttcgctct tgtggtgtct caccaaagcg
     4801 tgcctttttt gcacctcccc gctccggtga tttgctgttg gcacgtttaa aaaactgctg
     4861 cggatcgcgt tcaataccat cattaatccg ctcgcaaaac atgatatgtg cgtgtggttg
     4921 ttcctttccg tcgattgcac ctggcggatt gtggatcgcg tactgatagg catggcgatc
     4981 accaagctcc ttttgcacga aatcttcaac aagttctatc cgttgttcgc gtgtcagttc
     5041 tcgcggtaat gcgatctcaa tttcacggta tgccgtcccg ttttttcgtt caaattcatc
     5101 tgctgctttc catagctctg cgggattttt cttcgcccat gatggcatgt taccggatga
     5161 cgaaaattcc agatcctccc gcgatttgta gttcttatat tcgccggatc tagaaatata
     5221 atcagcatgt tttaaggcta cgccttttgc tccagtttta actgtacaat ggtagcttgc
     5281 catctgccgt taagccctcc gcaggagtcg cactgttctc gacgaaggag agaaacgtct
     5341 aagtgcgcat ccctgaatta atcagggatg attttaaggt ctcacacgca ggcagacaag
     5401 gtgatattat gcacaataac aactcacatt aacggcaaaa gtgcagaggt aagaatgaca
     5461 aatcgtgaag agtggttaag tgcaaaattg cctatatcaa cggactgaaa tcaccgtcag
     5521 agcagcaaag attacttgtg ttactggcag agaaaaaaaa ccgaacaacg acggatgaaa
     5581 aaacgttgtc cgcactgata cgggcagaaa aaccgcagag aaagcagccg cagcaaaagc
     5641 c
//
