LOCUS       CP033682                6141 bp    DNA     circular BCT 20-NOV-2018
DEFINITION  Raoultella ornithinolytica strain YDC775_2 plasmid unnamed, complete
            sequence.
ACCESSION   CP033682
VERSION     CP033682.1
DBLINK      BioProject: PRJNA499091
            BioSample: SAMN10388008
KEYWORDS    .
SOURCE      Raoultella ornithinolytica
  ORGANISM  Raoultella ornithinolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Raoultella.
REFERENCE   1  (bases 1 to 6141)
  AUTHORS   Iovleva,A.V.
  TITLE     OXA-232 in Raoultella ornithinolytica
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 6141)
  AUTHORS   Iovleva,A.V.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-NOV-2018) Medicine/Infectious Diseases, University of
            Pittsburgh, Scaife Hall, Suite 829 3550 Terrace Street, Pittsburgh,
            PA 15213, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: HGAP v. 3
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 268.0x
            Sequencing Technology             :: PacBio
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 11/14/2018 09:48:26
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            Annotation Method :: Best-placed reference protein set; GeneMarkS+
            Annotation Software revision      :: 4.6
            Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
            Genes (total)                     :: 5,199
            CDS (total)                       :: 5,076
            Genes (coding)                    :: 4,714
            CDS (coding)                      :: 4,714
            Genes (RNA)                       :: 123
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 362
            Pseudo Genes (ambiguous residues) :: 0 of 362
            Pseudo Genes (frameshifted)       :: 306 of 362
            Pseudo Genes (incomplete)         :: 50 of 362
            Pseudo Genes (internal stop)      :: 39 of 362
            Pseudo Genes (multiple problems)  :: 29 of 362
            ##Genome-Annotation-Data-END##
            Bacteria and source DNA available from University of Pittsburgh.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..6141
                     /organism="Raoultella ornithinolytica"
                     /mol_type="genomic DNA"
                     /strain="YDC775_2"
                     /isolation_source="Abdominal abscess"
                     /host="Homo sapiens"
                     /db_xref="taxon:54291"
                     /plasmid="unnamed"
                     /geo_loc_name="USA:Pittsburgh"
                     /lat_lon="40.44 N 79.96 W"
                     /collection_date="Apr-2016"
                     /collected_by="University of Pittsburgh"
     gene            join(5964..6141,1..95)
                     /locus_tag="EFT36_00005"
     CDS             join(5964..6141,1..95)
                     /locus_tag="EFT36_00005"
                     /inference="COORDINATES: protein motif:HMM:PF04899.10"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein MobD"
                     /protein_id="AYW52670.1"
                     /translation="MTGLERELLCAFEALQSAYEQQHKAWQESYANLASMNESTKQEAE
                     ISRAAAERLTRQVNGLTQQVDGLSKQLEGLTGLVSKLQKKGNTGS"
                     /name="protein MobD"
     gene            complement(433..714)
                     /locus_tag="EFT36_00010"
     CDS             complement(433..714)
                     /locus_tag="EFT36_00010"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="AYW52665.1"
                     /translation="MGFFNLSKALEEVSDAFGAKETAIASAKLLGKGVVNLAHFAATTG
                     LDSVVKQTSNKVLNSESSTEEQREQAKKSAAWADARIAARNKAENTED"
                     /name="hypothetical protein"
     gene            1058..1855
                     /locus_tag="EFT36_00015"
     CDS             1058..1855
                     /locus_tag="EFT36_00015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011071128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OXA-48 family carbapenem-hydrolyzing class D
                     beta-lactamase OXA-232"
                     /protein_id="AYW52666.1"
                     /translation="MRVLALSAVFLVASIIGMPAVAKEWQENKSWNAHFTEHKSQGVVV
                     LWNENKQQGFTNNLKRANQAFLPASTFKIPNSLIALDLGVVKDEHQVFKWDGQTRDIAA
                     WNRDHDLITAMKYSVVPVYQEFARQIGEARMSKMLHAFDYGNEDISGNVDSFWLDGGIR
                     ISATQQIAFLRKLYHNKLHVSERSQRIVKQAMLTEANGDYIIRAKTGYSTSIEPKIGWW
                     VGWVELDDNVWFFAMNMDMPTSDGLGLRQAITKEVLKQEKIIP"
                     /name="OXA-48 family carbapenem-hydrolyzing class D
                     beta-lactamase OXA-232"
     gene            complement(2262..2414)
                     /locus_tag="EFT36_00020"
                     /pseudo=""
     CDS             complement(2262..2414)
                     /locus_tag="EFT36_00020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015059985.1"
                     /note="incomplete; partial on complete genome; missing
                     start; Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="EreA family erythromycin esterase"
                     /name="EreA family erythromycin esterase"
     gene            2790..3737
                     /locus_tag="EFT36_00025"
     CDS             2790..3737
                     /locus_tag="EFT36_00025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014293673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replicase"
                     /protein_id="AYW52667.1"
                     /translation="MRKCAQLELFRERLPRKPYYSDELTTGLRIADVARALGARYIQPN
                     GPTHRHWIVFDVDHAAATLSWDDVGAPAPNITVTNKANGHAHLIYGLDTPIRTAPDGNA
                     APLRYAAAIEAALREKLGADMGYSGLICKNPLHEHWLVQVWEPRLYDLAWLSDYLDLSS
                     YNGRKSLPEYGLGRNCTLFEKTRLWAYKAIRQGWPDYPEWLAACVDRASGYNAQFEQPL
                     PANEVRHTAKSIAKWTHQHLSPAGFREEQARRGAKGGKVSKGGGRPSNSGKDKSDLLPE
                     VLRLKAQGYTNRDIADDLQISPSTVSVYLKRDRP"
                     /name="replicase"
     gene            4145..4537
                     /locus_tag="EFT36_00030"
     CDS             4145..4537
                     /locus_tag="EFT36_00030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005671614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="AYW52668.1"
                     /translation="MSTTQIEKDSRRKAVNGVISSFQLEGEAITDEFKILLEDYINGKI
                     STDEVLAMVSDEPTTTEYDYEITPRTLGLGGGWNLRLLENGEEVGGGVFPLPEHCDFRD
                     EKALQTLLDSLYEDALAEASAWLASR"
                     /name="hypothetical protein"
     gene            4519..4857
                     /gene="mobC"
                     /locus_tag="EFT36_00035"
     CDS             4519..4857
                     /gene="mobC"
                     /locus_tag="EFT36_00035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005322038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="plasmid mobilization relaxosome protein MobC"
                     /protein_id="AYW52669.1"
                     /translation="MAGQPLKRLRSIKIRVSDAELERLRELCPKAQLAEWMREQCLGVA
                     QPQRRTPAPTVDPALLRQLAGMGNNLNQIARRVNSGEWGPLDRLRIIAELSAIGRELEE
                     LHHDHQIP"
                     /name="mobC"
     gene            4838..5710
                     /locus_tag="EFT36_00040"
                     /pseudo=""
     CDS             4838..5710
                     /locus_tag="EFT36_00040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004193909.1"
                     /note="incomplete; partial on complete genome; missing
                     stop; Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /name="hypothetical protein"
     ARG             1059..1852
                     /name="blaOXA-232"
                     /gene="blaOXA-232"
                     /gene_name="OXA-48 family carbapenem-hydrolyzing class D
                     beta-lactamase OXA-232"
                     /tool="amrfinderplus"
                     /drug_class="BETA-LACTAM"
                     /identity="100.0"
                     /coverage="100.0"
     Typing          2803..3724
                     /name="rep_cluster_1195"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="81.974"
                     /coverage="98.0"
                     /evalue="0.0"
     Typing          4839..6139
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="98.157"
                     /coverage="99.0"
                     /evalue="0.0"
ORIGIN
        1 gcttaacgca gcaagtggac ggcttgagca agcagctgga gggcttgacc gggctagtca
       61 gcaagttgca aaagaaaggg aacacaggct cctgaaggca ctggatcgag gctgggagcg
      121 tggagacaga tcgcgaggct ttgagcgttg acggaacaaa acggccgtca gttataaaaa
      181 aaggaaagtg ctatcacttt ccttttatcg gcgggaatta tcgttgagtt cttctatgcc
      241 atttttcata gtagtaactg taatcttcat ctctaccacc agattcaatc cagtcatcat
      301 actcagggct atttttgaaa tctgaatcag acatgctaac tccttgttat tagttggctt
      361 ctatggaagc tagcgcaccg tgaagttatg atcaacgatg tagtccacat cattgtcgaa
      421 atgtgcgttc agctagtctt cggtgttttc tgctttattt ctagcggcga ttctcgcgtc
      481 tgcccatgcg gcagactttt tagcctgttc tcgttgttct tcggttgaag actcgctgtt
      541 gagaactttg ttgctcgttt gtttgaccac cgaatccaaa cctgttgttg ctgcaaaatg
      601 agctaggtta acaactccct tacctaacaa cttggcacta gcgattgcgg tttctttagc
      661 cccaaaagca tcagacacct cctcaagcgc tttagatagg ttaaaaaatc ccatactccc
      721 cctaagaata tcatcaataa aattgagtgt tgctctgtgg ataacttgca gagtttatta
      781 agtatcattg cagcaaagat gaaatcaatg atttatcaaa aatgattgaa aggtggttgt
      841 aaataatgtt acaatgtgtg agaagcagtc taaattcttc gtgaaatagt gatttttgaa
      901 gctaataaaa aacacacgtg gaatttaggt aatagttaaa gcttgtgcct gattgttgcc
      961 acaattggtc agcagtttgc tagggaatga gagggcagag aatgataagc ttagcactta
     1021 atttgtatgg atatattgca ttaagcaagg ggacgttatg cgtgtattag ccttatcggc
     1081 tgtgtttttg gtggcatcga ttatcggaat gccagcggta gcaaaggaat ggcaagaaaa
     1141 caaaagttgg aatgctcact ttactgaaca taaatcacag ggcgtagttg tgctctggaa
     1201 tgagaataag cagcaaggat ttaccaataa tcttaaacgg gcgaaccaag catttttacc
     1261 cgcatctacc tttaaaattc ccaatagctt gatcgccctc gatttgggcg tggttaagga
     1321 tgaacaccaa gtctttaagt gggatggaca gacgcgtgat atcgccgctt ggaatcgtga
     1381 ccatgactta attaccgcga tgaagtactc agttgtgcct gtttatcaag aatttgcccg
     1441 ccaaattggt gaggcacgta tgagtaaaat gctgcacgcc ttcgattatg gcaatgagga
     1501 tatctcgggc aatgtagaca gtttttggct cgatggtggt attcgcattt cggctaccca
     1561 gcaaatcgct tttttacgca agctgtatca caacaagctg cacgtttctg agcgtagtca
     1621 gcgcatcgtg aaacaagcca tgctgaccga agccaatggc gactatatta ttcgggctaa
     1681 aacgggatac tcgactagta tcgaacctaa gattggctgg tgggttggtt gggttgaact
     1741 tgatgataat gtgtggtttt ttgcgatgaa tatggatatg cccacatcgg atggtttagg
     1801 gctgcgccaa gccatcacaa aagaagtgct caaacaggag aaaattattc cctagaagtg
     1861 gttagcgcgt atttgtgtga aatagccgtc atataagctg taaagatata tggacaaaat
     1921 gctgatgctc gatgcgcttg tagttaatgg ctcatactta atcggtcagg cctaatcgac
     1981 ttaagctccg cgcgttaact ttcagcctga gcattagcat cacattccta aacgtaaaaa
     2041 gcctagccaa tttgctaggc ttttttgtta tctcaatggc catggtcact caacatgggg
     2101 gtgtgaataa aggagtggcg atgtcagtaa aggtgaatgc cgctgcgata aagtgcctag
     2161 cccatcaagg attgtaggct ttcttggctg ctaaagcgtt tgacgaaaaa gtccaagaag
     2221 gcgctgatat tggttctcca tcattttcat ctaccggttt actataggtc aaccaggccg
     2281 tccttgccgg cgcttgggac gcagacgatg gcatcaaatg cctcgctcaa attcgtttct
     2341 acagaggcgc tttgggaccg cattcgcttt gctttcatgg gggcatctgt caatgtcaga
     2401 catgaatcct ccgatatagg ttgatttttg atctcttcaa cacttggtgt tgtccgacta
     2461 gagagactta tatggatcag tattcttgca ctgacaatgg tgccactcaa tcccaaggat
     2521 cgacctagtt agaggcgtag atcaagcaat tcaaaacagc gcagaagcag aaggaggtgg
     2581 aaatatgttc cagggtgaaa ggttacatgc aactaacgtt gctctctagg atgtgcctgc
     2641 tgtaacgtat tgtccagaaa agacaaaccc ccgttatcgc ttgcatcttg gcggagctgc
     2701 gaaaaacggg ggccgtgacg aatcacaaga gaagtctatc acatggatca tgccaaacaa
     2761 ccccacgccg ccaataagcg cggtggtgct tgagaaagtg cgcacagctt gagctgtttc
     2821 gggagcgcct gccccggaaa ccctactatt ccgacgagct tacaacgggc ctacggattg
     2881 cggatgttgc ccgcgccctt ggtgcgcgtt acatccagcc gaacgggcca acgcaccgcc
     2941 actggatcgt ttttgacgta gaccatgcag ccgctacgtt atcttgggat gacgtaggcg
     3001 ctccagcccc taacattacc gtcacgaaca aggccaacgg ccacgcgcat ctgatctacg
     3061 gactggatac gccgatccgc actgccccgg atggaaatgc agcccctctg cggtatgccg
     3121 ccgccatcga ggccgcgctc cgggagaaat taggggcgga tatgggctac tccgggctga
     3181 tctgcaagaa ccccctgcat gagcactggc tggtgcaggt atgggaaccc cggctctacg
     3241 atttagcctg gctatccgat tacctcgatc tgagctccta caatggccgc aaatcgcttc
     3301 ctgagtacgg gcttgggcga aactgtaccc tgttcgagaa aacgcgcctg tgggcctata
     3361 aagcgatccg gcagggctgg ccggattacc ccgaatggtt ggccgcttgt gttgaccggg
     3421 catcaggata taacgcccag ttcgagcagc cgctccccgc aaacgaagtc cggcacacgg
     3481 ccaagtccat tgccaaatgg acgcaccagc acctaagccc cgcagggttc agagaggagc
     3541 aggcccggag aggtgcgaag ggcggcaagg tatccaaggg agggggaagg ccgagcaata
     3601 gcggtaagga caagtccgat ctattgccgg aggttctgcg gcttaaggct caggggtaca
     3661 ccaaccgcga tatagcggac gatcttcaaa tctcccccag tacggtgagc gtttacctaa
     3721 agcgtgatcg tccgtgatcg aaacaagcct tatcagataa tagccccctt taggggggtt
     3781 cctgcgctct tgtcttttag ccttaaaaaa tccttttagc gcggatcttt ggcgaggtgg
     3841 acaactgcgc ctgtccgtcc atcgcccccc tgttttttcg gggggtgtgg gcggcagcag
     3901 ttatccacgg agccgctctt tcccttgatc ttgctctagg gcttgcagta tcccgcccat
     3961 ggttgaataa tgtactaagc aaggctacac agaggcccct ctacctgctt cgcggtctcg
     4021 ggcctctgtg gccttgttca ggggtgctac gcccccccga aaccccctgt ggcccccgct
     4081 cgatccgccc cttcgggacg gtctgcgcgg tggcttcttg gctctggaga atggacgagg
     4141 ccctatgtca acaacacaga tagagaaaga ttcgagaagg aaggcagtca atggcgttat
     4201 ttctagtttc caactagagg gggaggccat aaccgatgaa ttcaaaattc tacttgaaga
     4261 ttatatcaat ggaaaaattt ccaccgatga ggtgttagct atggtaagtg acgaacccac
     4321 aacaacggaa tacgactacg aaatcacccc ccgcactctc ggtcttggcg ggggctggaa
     4381 tctgcgtttg ctggagaacg gcgaagaggt cggcgggggt gttttcccct tgccggagca
     4441 ctgcgatttt cgggatgaaa aggcgctcca gacgctactc gatagcctct atgaggacgc
     4501 cttagcggag gcctctgcat ggctggccag ccgttaaagc gcctccgctc tatcaagatc
     4561 cgggtctcag atgcggagct tgagcgcctg cgggagctct gccccaaggc ccaactggcg
     4621 gagtggatgc gggagcaatg tctcggtgtt gcgcaacccc agcgccgaac gccggcgcct
     4681 accgtagatc cggcgctctt gcggcagttg gccggaatgg gcaacaacct gaaccagatc
     4741 gcccggcgcg ttaattccgg ggagtggggg ccgttggatc ggctgcgcat catagcggag
     4801 ctgtccgcta taggccgcga gctggaggaa ctgcaccatg atcatcaaat tccataaccg
     4861 tggggtaggc cggggctccg ggcctgttgg ctacttgttg ggccgtgacg ggaaccggga
     4921 aggcgcaacg ctcgaccggg gcaaccctgc ggtgattgaa gccctgattg attccagtcc
     4981 ctacgccaaa aaatacacct ctggcgttct gtcgtttgcc gaggctgatt tacccagggc
     5041 gaccaaggac aagctgatga gcgactttga aaaggcgctc ctgcccggac tggagggcaa
     5101 ccagtacgct gttttgtggg tagagcaccg cgacaagggg cggctggagc tgaattttgt
     5161 agtcccgaac atcgaattgc agagcgggaa gcggctgcaa ccctacttcc acaaggccga
     5221 caatccgcgc ctcgatgcgt ggcgaaccgt ggtaaacggg gagctgaaat tgcacgaccc
     5281 ggacgatccg ttaaaccgtc aggccgttat cacgccaaag gatttgccga gggggcacaa
     5341 ggaggccgct caggccatta cagacgggct tttacgcatg gccggagcag gggagatcca
     5401 gagccgcgat gatgtgcgca aagccttgca gggtgcgggt ttcagcgtgg tacgcgaaac
     5461 caaaaacagc ctgagcattg ccgacccgga cggggggcgg aacatccgat taaagggggt
     5521 gctgtatgag caagatttta gacatggcga aggacttcga gcagagctcg aagcagcagg
     5581 ccaacgctat cgagaagcgt ctgaccgaag aattcacgag gcacgagaaa gctatctccg
     5641 gggcgttgaa atcaagcgag gagaaaatga gcgccgctat tgccgagcac agccagaaaa
     5701 tgggctggct gttgctcaaa acgtggatct ggatgctggt cagcatcgtc ctgttcttga
     5761 gcgcaacgag cgggatcctc tggtatcagg gggaattgat agcggagcgg caagccactc
     5821 tccaagcctt ggcagagaag ggcggcaagc taaagctgac ccagtgcggg aagaaattgg
     5881 agcacctttg cgtgcagatc tccgacccca atccaaccgt ttgggggaag gatacctatt
     5941 ggatcgtgcc gaaggggtac taaatgacgg gattggagcg ggaattgctc tgcgcgttcg
     6001 aggctttgca gagcgcatac gagcagcagc acaaggcatg gcaggaaagc tacgcgaact
     6061 tggcgagcat gaacgagagc accaaacaag aggccgagat cagcagggca gcagcagagc
     6121 gattgacgag gcaggtgaac g
//
