LOCUS       CP031813                2667 bp    DNA     circular BCT 30-AUG-2018
DEFINITION  Klebsiella pneumoniae strain INF014-sc-2279884 plasmid unnamed3,
            complete sequence.
ACCESSION   CP031813
VERSION     CP031813.1
DBLINK      BioProject: PRJNA486877
            BioSample: SAMEA3356957
KEYWORDS    .
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 2667)
  AUTHORS   Wyres,K.L., Wick,R., Judd,L.M., Froumine,R., Tokolyi,A., Gorrie,C.,
            Lam,M.C., Duchene,S., Jenney,A. and Holt,K.E.
  TITLE     Distinct evolutionary dynamics of horizontal gene transfer in drug
            resistant and virulent clones of Klebsiella pneumoniae
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2667)
  AUTHORS   Wyres,K.L., Wick,R., Judd,L.M., Froumine,R., Tokolyi,A., Gorrie,C.,
            Lam,M.C., Duchene,S., Jenney,A. and Holt,K.E.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-AUG-2018) Department of Biochemistry and Molecular
            Biology; Bio21 Molecular Science and Biotechnology Institute,
            University of Melbourne, University of Melbourne, Parkville, VIC
            3010, Australia
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. v0.2.0
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 108x
            Sequencing Technology :: Nanopore minION; Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 08/22/2018 13:47:07
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            Annotation Method :: Best-placed reference protein set; GeneMarkS+
            Annotation Software revision      :: 4.6
            Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
            Genes (total)                     :: 5,524
            CDS (total)                       :: 5,402
            Genes (coding)                    :: 5,250
            CDS (coding)                      :: 5,250
            Genes (RNA)                       :: 122
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 11
            Pseudo Genes (total)              :: 152
            Pseudo Genes (ambiguous residues) :: 0 of 152
            Pseudo Genes (frameshifted)       :: 87 of 152
            Pseudo Genes (incomplete)         :: 63 of 152
            Pseudo Genes (internal stop)      :: 41 of 152
            Pseudo Genes (multiple problems)  :: 36 of 152
            ##Genome-Annotation-Data-END##
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..2667
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="INF014-sc-2279884"
                     /db_xref="taxon:573"
                     /plasmid="unnamed3"
     gene            complement(159..446)
                     /locus_tag="D0897_27600"
     CDS             complement(159..446)
                     /locus_tag="D0897_27600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001490769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="AXS38727.1"
                     /translation="METRVQFRIESETKKMAKQALEKKGISLSDALRAFLDKLAATEKV
                     MTKEETWLKEQIEETFSRVDKGEIRYYSEDEADERMNSFISKIENKHETA"
                     /name="hypothetical protein"
     gene            669..1064
                     /locus_tag="D0897_27605"
     CDS             669..1064
                     /locus_tag="D0897_27605"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="AXS38728.1"
                     /translation="MAFVSQVDKSRAASSRIGDSSIVVTQSYKASTKAQELSIRLTSLV
                     LSKGGMKIGDHVDVLYDKDSDRWMLRKMDGGLKITGKDDAPTGLIRYTLKDTHARFTEE
                     KEHLPIRKSSIEDSLEIEDGQIIFKLD"
                     /name="hypothetical protein"
     gene            1076..1339
                     /locus_tag="D0897_27610"
     CDS             1076..1339
                     /locus_tag="D0897_27610"
                     /inference="COORDINATES: protein motif:HMM:PF05016.13"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="AXS38729.1"
                     /translation="MTSKVLWADKALSDRETIFESNDKVSGLSYAKSEDAKIKRAVSTI
                     KRNNKVGRNDLDVRGYVYVLPKRYKILYRLTDEHIFIERVFY"
                     /name="type II toxin-antitoxin system RelE/ParE family
                     toxin"
     gene            complement(1707..1991)
                     /locus_tag="D0897_27615"
     CDS             complement(1707..1991)
                     /locus_tag="D0897_27615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001692121.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="AXS38730.1"
                     /translation="MRRAVGLLHKGVHESEKKKMSTGRFSIGFAPLTSMTRSYAQISGG
                     ETRQDYKDPRRFPLVAPPCALLFLPFGLPVSLRCYGRVYLIPRLTLSSG"
                     /name="hypothetical protein"
     gene            complement(2405..2662)
                     /locus_tag="D0897_27620"
     CDS             complement(2405..2662)
                     /locus_tag="D0897_27620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001418832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="AXS38731.1"
                     /translation="MHEYASKCITRKFTPFSQGKSCFRRSSPPKTVNGDAIYCVAVKRC
                     RRSRKTGFQHVQESGSSTTCNHVMASRRTTHHTIHRRFDS"
                     /name="hypothetical protein"
ORIGIN
        1 aaaaacagag cctgcgcttt ctggcggggt ttcgggttgt ttgttgcctg ttttaccggt
       61 ttcccgtcgg aaacgccctg agaccgcttg ggcggtgcgt acaattaagg gattatggta
      121 aataagggca taaaaaaagc cgccattggc ggcttttttt atgcagtttc gtgtttgttc
      181 tcgatttttg agatgaagga gttcatgcgt tcatcagctt catcttctga gtaatagcgg
      241 atctctcctt tatctaccct tgagaatgtc tcttctatct gctctttcag ccatgtctct
      301 tcttttgtca taaccttctc cgtcgctgct aacttatcga gaaacgccct tagcgcgtcg
      361 ctaagtgaaa tccctttctt ttcaagcgct tgctttgcca ttttctttgt ttcagattca
      421 attctgaatt gcacccttgt ttccatagat atagatccca gagtctattg tgagtacgtt
      481 tgtgctcaca atagactctg ggatccctac agtcaatgct tcctttctta gatttatgct
      541 tggaaaaaag taactttttt cttcggattt tgagagagtt tagagatcag ctaaaaacat
      601 agatctgtgt tgctaagtgt tttatccgat cgtattataa acatgaatat aaactaccag
      661 gaggttttat ggcgttcgtt agtcaggttg ataagtctag agctgcttcg agtcggattg
      721 gtgattcgtc tatagtggta acgcagtcat acaaagcgtc gactaaggct caagagctat
      781 ccattaggtt gacatcatta gtgttgtcta aaggtgggat gaaaattggc gatcacgttg
      841 atgttctcta tgacaaagat agtgatcgct ggatgttaag aaagatggat ggagggttaa
      901 agattactgg taaggatgat gccccgaccg gtttgattag atataccctg aaggatacgc
      961 atgcgagatt tactgaagag aaagagcacc tccctattcg taaatcctct attgaggatt
     1021 ctctggagat tgaggatggg cagattattt ttaagcttga ttagcgggag gtttgatgac
     1081 ttctaaagtt ttatgggcag ataaggcatt atctgatcga gagactatct ttgagtctaa
     1141 cgataaggtc tctggtttgt cgtatgcaaa atcagaagat gccaaaatta aacgtgctgt
     1201 ttccacgata aaacgaaaca acaaagtagg cagaaatgac ctagatgtgc gaggctatgt
     1261 ctatgttcta cctaaaagat acaagatttt gtaccgactg acggatgagc atatttttat
     1321 tgagcgcgtt ttctactgat ggtttgccga cctttcttga ctgcgcgtct ctttagctat
     1381 taatcttggg atgaagaaaa ccaccgctac caacggtggt ttcttcgtag tcctttgagc
     1441 taccaactca ttggactggt ggtaactggc tttagcggag cgcagtcacc aaaactgttc
     1501 tttcagtgta gccgtagttc actgctcact tcaagatatc cttgcttacc ttctttctgc
     1561 gctccgcaaa tcagttatta cgggcttcca ccattgtcat aatttgagtc aaacaagatt
     1621 ggattcaaga gtcgagttgc ttgtttgtcg tgggggtcgg actgaacggg gggttcgtgc
     1681 atacagtcca gcttggagcg aactgcctac ccggaactga gtgtcaggcg tggaatgaga
     1741 taaacgcggc cataacagcg gagtgacacc ggtaaaccga acggcaggaa caggagagcg
     1801 cacgggggag ccaccagggg gaaacgcctg ggatctttat agtcctgtcg ggtttcgcca
     1861 ccactgattt gagcgtaaga tcttgtcatg ctcgtcaggg gggcgaagcc tatggaaaaa
     1921 cggccagtgc tcatcttttt tttctcactt tcatggactc ctttgtgtaa aagccccacc
     1981 gctcgccgca gtcgaacgac cgagcgtagc gagtcagtga gcgaggaagc ggaagagtca
     2041 ccgtgttacc cggagctgcc tgacgctccg gtttctcatt ttcctttcgg gtatgttctt
     2101 aaaccttccc gaaaacaggt aactctctga atgttcctca ccactaaaaa tacccacacc
     2161 ccacgcaaaa ttaaaatttt gaagataact cattaatatc agttagttgt gagttattaa
     2221 attaggcagc attactttct gtaaggtgaa tccaagtcgt cggcgattcg tgtacgactt
     2281 gccgacgact tgtcatagag tcatcgacga ctcacttaag actatcagta acttatgacg
     2341 acttgactct agagtcgaat cgtcattttg gtgtttttgt gaccttggcg actctagagt
     2401 caagtcacga gtcgaatcgc cggtgaatcg tgtggtgagt cgtccgccga cttgccataa
     2461 cgtgattgca ggtcgtcgac gaacccgatt cctgaacgtg ctgaaaaccg gttttccggc
     2521 ttcgccggca acgcttcacg gccacgcaat aaattgcgtc cccgttcacc gttttcggag
     2581 gagaagaacg ccggaaacag gacttaccct ggctgaatgg tgtgaatttc cgggttatgc
     2641 acttgctcgc atactcatgc atgccgt
//
