LOCUS       CP027492                4284 bp    DNA     linear   BCT 19-MAR-2018
DEFINITION  Staphylococcus aureus strain ST2594 isolate 004 plasmid unnamed7.
ACCESSION   CP027492
VERSION     CP027492.1
DBLINK      BioProject: PRJNA436877
            BioSample: SAMN08634544
KEYWORDS    .
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus.
REFERENCE   1  (bases 1 to 4284)
  AUTHORS   Bastos,L.R., Martins,M.C.F., Albano,R.M., Marques,E.A. and Leao,R.S.
  TITLE     Whole genome sequencing of ST2594 MRSA strain causing skin
            colonization and low-grade infection in surgical site. Implications
            for MRSA pathogenesis
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4284)
  AUTHORS   Bastos,L.R., Martins,M.C.F., Albano,R.M., Marques,E.A. and Leao,R.S.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-MAR-2018) Departamento de Microbiologia, Imunologia e
            Parasitologia, Universidade do Estado do Rio de Janeiro, Av. 28 de
            Setembro, 87, Vila Isabel, Rio de Janeiro, RJ 20551-030, Brazil
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: SPAdes v. 3.5; MAUVE v. 2.4.0
            Assembly Name                     :: Saureus141ST2594
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Reference-guided Assembly         :: BA000018.3
            Genome Coverage                   :: 40.0x
            Sequencing Technology             :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/06/2018 13:58:18
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            Annotation Method :: Best-placed reference protein set; GeneMarkS+
            Annotation Software revision      :: 4.4
            Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
            Genes (total)                     :: 2,922
            CDS (total)                       :: 2,883
            Genes (coding)                    :: 2,764
            CDS (coding)                      :: 2,764
            Genes (RNA)                       :: 39
            rRNAs                             :: 3 (5S)
            complete rRNAs                    :: 3 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 119
            Pseudo Genes (ambiguous residues) :: 0 of 119
            Pseudo Genes (frameshifted)       :: 65 of 119
            Pseudo Genes (incomplete)         :: 37 of 119
            Pseudo Genes (internal stop)      :: 29 of 119
            Pseudo Genes (multiple problems)  :: 12 of 119
            ##Genome-Annotation-Data-END##
            Bacteria and source DNA available from Lab2_UERJ_19239.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..4284
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /strain="ST2594"
                     /isolate="004"
                     /isolation_source="Femural surgical wound"
                     /host="Homo sapiens"
                     /db_xref="taxon:1280"
                     /plasmid="unnamed7"
                     /geo_loc_name="Brazil: Rio de Janeiro"
                     /lat_lon="22.8951 S 43.2431 W"
                     /collection_date="2015-03-11"
                     /collected_by="Leonardo Bastos"
     gene            <1..135
                     /locus_tag="C6V85_14360"
     CDS             <1..135
                     /locus_tag="C6V85_14360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001105942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS6 family transposase"
                     /protein_id="AVO70329.1"
                     /translation="QSINTAKNTLKGIECIYALYKKNRRSLQIYGFSPCHEISIMLAS"
                     /name="IS6 family transposase"
     gene            complement(525..728)
                     /locus_tag="C6V85_14365"
     CDS             complement(525..728)
                     /locus_tag="C6V85_14365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001838609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="AVO70330.1"
                     /translation="MVGLLYLTSPYCETLEDLQHDITTNQHSTIFSEENIVGAFEIKEN
                     IIVNIYIKFSFLKMNRIMELVN"
                     /name="hypothetical protein"
     gene            complement(806..1219)
                     /locus_tag="C6V85_14370"
     CDS             complement(806..1219)
                     /locus_tag="C6V85_14370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002508067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="AVO70331.1"
                     /translation="MYKSILLAADGSENSLRSAKEVLNFIDDNTIVTILTVVDVEESKT
                     DVLHGKQSSSLTNEREDKLSHITELFVEHNVKYEMKIAHGVPADTVVSVANSGEFQAIV
                     LGTRGLNSLQEMVLGSVSHKVAKRSEIPVVIVK"
                     /name="universal stress protein"
     gene            complement(1233..2684)
                     /locus_tag="C6V85_14375"
     CDS             complement(1233..2684)
                     /locus_tag="C6V85_14375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_863238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SulP family inorganic anion transporter"
                     /protein_id="AVO70332.1"
                     /translation="MVEKLKNEWLNQPGKNILAGIVVALALIPEAIAFSIIAGVDPMVG
                     LYTSFIIAVVTAIVGGRAAMISGATGAIALLIVPLVKDYGVEYLLAATILMGLIQLILG
                     LLKVGRLMKFIPRSVMIGFVNALGIMIFMSQIEHIFGISISTYIYVIVTLLIVYIIPRF
                     FKAIPAPLIAIIVLTALYMYTGSDVRTVGDLGNIKQAFPHFLIPNVPFNLETLQIIFPY
                     SLSMAIVGLVESLLTAKIVDDATDTYSSKNRESCGQGIANMITGLFGGMGGCAMIGQSV
                     INVKSGANSRLSTFTAGIVLIFMIIVLGGLVVQVPMPILAGIMVMVSVGTFDWNSFKYI
                     KKAPKTDAVVMLITVIIVLMTHNLALGVVAGVVFSALFFATKISKVEVISEEFGKINRL
                     SFKGQIFFVSIDSMMEQINFEIENSTIELNFNNAHLWDDSAVDAIDTIVRKFEEKNNIV
                     RVEKLNSDSRKVVSELSQLNENHLN"
                     /name="SulP family inorganic anion transporter"
     gene            2798..3340
                     /locus_tag="C6V85_14380"
     CDS             2798..3340
                     /locus_tag="C6V85_14380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011251335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="resolvase"
                     /protein_id="AVO70333.1"
                     /translation="MKYGYIRPVTINDDLNEQKKKIETHTNEIVEEIHANNKKRNILDV
                     LLNEKLVPGDMLYVTDLCILADSTKHLVDILDYLSQEDISLYVINLNRYIYKDIKGEFI
                     EILHDITDFQSDIVKFRTRVGLENYSKDGKTLGRPKRDDKNLRDAIEMYMSKKYTLDEI
                     KEQTNISRATLYRHLDK"
                     /name="resolvase"
     gene            3354..3539
                     /locus_tag="C6V85_14385"
     CDS             3354..3539
                     /locus_tag="C6V85_14385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000938699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="AVO70334.1"
                     /translation="MLQDIVYKVLLSIREENSVDFKTLDVSEKPFLLALESVAGEDLAQ
                     KISKFQITIHKRLFVL"
                     /name="hypothetical protein"
     gene            complement(3542..4150)
                     /locus_tag="C6V85_14390"
     CDS             complement(3542..4150)
                     /locus_tag="C6V85_14390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000635273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposon DNA-invertase"
                     /protein_id="AVO70335.1"
                     /translation="MIVGYARVSSIEQNLERQLENLKTFGAEKIFIEKQSGKSIENRPI
                     LQEALNFVRMGDRFIVESIDRLGRNYDEVIHTVNYLKDKEVQLMITSLPMMNEVIGNPL
                     LDKFMKDLIIQILAMVSEQERNESKRRQAQGIKIAKEKGVYKGRPLLYSPNAKNPHKRI
                     VYHRVIELLNKGESISKIAKDVGITRQTIYRIKRERTEH"
                     /name="transposon DNA-invertase"
ORIGIN
        1 caaagtatca atacagcaaa gaatacttta aaaggtattg aatgtattta cgctctatat
       61 aaaaagaacc gcaggtctct tcagatctac ggattttcgc catgccacga aattagcatc
      121 atgctagcaa gttaagcgaa cactgacatk ataaattagt ggttagctat atttttttac
      181 tttgcaacag aaccacattt acggtatcag tcaaaaagaa acaataaggt aaattaaaat
      241 gaataatata tacaattaac tactcataat catcgattat gttaattact gtcagatatt
      301 agttgaataa acttcaggag atatacataa ctatatataa tggagatatt atttttagtt
      361 atatttagca tatttaaata atgttaattt atctgataaa atagcctcac catacttttc
      421 aaaccctaaa gattcataga agtggtaatt tctacaattt ttatgaggag tataaacggt
      481 ctatttattt ttattagtaa atttttagaa aatcattttc atagttaatt taccaattcc
      541 attattctgt tcattttgag aaatgaaaat tttatataaa tgttgactat tatgttttct
      601 ttaatttcaa atgcgccaac tatattttct tctgaaaaaa tcgtagagtg ttgatttgtg
      661 gttatatcgt gttgtaagtc ttccaaagtt tcacaatatg gactcgttaa atacaataac
      721 ccaaccataa tagaaatttt tggttttcat ctattattca cctctaaaat aaaactcatt
      781 ccgtgaaagg attaagttag acagactatt ttacaataac aacgggaatt tctgaacgtt
      841 ttgctacttt gtgactgacg ctacctaaca ccatttcttg caaactattt aatccacgtg
      901 ttcctaaaac aatagcttga aattctccac tattggcaac tgaaacaact gtgtccgcag
      961 gaacaccatg tgcaattttc atttcatatt ttacattatg ctctacaaat aactcagtga
     1021 tatgagagag tttgtcttct ctttcattcg tcaaactgga actttgttta ccatgtaaaa
     1081 catctgtttt cgattcctca acatctacaa ctgtaagaat agtaacaatc gtattatcat
     1141 ctataaaatt taaaacctct tttgctgaac gcaaactatt ctctgatcca tctgctgcta
     1201 ataaaattga tttatacata aataacgctc ctttagttta aatgattttc atttagttgg
     1261 cttaactctg aaacaacttt acgactatct gaatttaatt tttctacacg aacaatatta
     1321 tttttttctt cgaattttcg tactatcgtg tcaattgcat ctactgcaga atcatcccat
     1381 aagtgtgcat tattgaagtt taattctatg gtactatttt caatctcaaa gtttatttgc
     1441 tccatcatag aatcaataga aacaaaaaag atttgtcctt taaaagataa tcggtttatt
     1501 ttaccgaact cttcagaaat aacttctact tttgaaattt tagtagcaaa gaataaagca
     1561 ctgaaaacaa cgcctgcaac aacacctaaa gctaaattat gcgtcattaa aacaataatc
     1621 actgtaataa gcataacgac tgcatccgtt tttggtgctt tcttaatata tttaaaggaa
     1681 ttccaatcaa atgtaccaac agaaaccata accataatac ctgctaaaat tggcattgga
     1741 acttgaacta caagtcctcc aagtacaata atcataaata taagtacaat acccgctgta
     1801 aatgtagaca atctactgtt tgcacctgat ttaacattga tgacggattg accaatcatg
     1861 gcacaacctc ccatgccacc gaataatccg gtaatcatgt tagcgatacc ttgaccacag
     1921 gactctctat ttttactact ataagtatct gtagcatcgt ctacaatttt agctgtaagt
     1981 aagctctcaa ctaaacctac aatagccata gataaagagt aagggaaaat aatttgaaga
     2041 gtttctaaat taaagggaac attagggatt aaaaagtgag ggaaagcttg tttgatatta
     2101 cctaaatctc ccacagttct aacgtcagaa cctgtataca tataaagggc agtcaatacg
     2161 ataatagcta ttaatggtgc aggtatagct ttaaaaaatc ttggaattat atatacgatg
     2221 agtaacgtta caattacata tatataagtt gaaattgata tcccaaaaat atgttctatt
     2281 tgagacataa aaatcatgat tcctagagca ttcacaaaac ctatcatgac agaacgaggt
     2341 ataaatttca ttagacgacc tactttaaga agtcctaaaa ttaattgaat taaccccatc
     2401 agtatagtag cagctagaag atactctaca ccgtaatctt tcacaagtgg cacaattaat
     2461 aaggcaatag cccctgttgc acctgatatc atcgccgctc taccacctac aatagcagtg
     2521 acgacagcaa taatgaacga agtatataaa ccaaccatag gatctacacc agcaatgatg
     2581 gagaatgcga tagcttcagg gattaaagct aaggcaacta caatacctgc aagtatgttt
     2641 ttgcctggct ggttaagcca ttcatttttt aatttttcaa ccataactta ctctcctttt
     2701 tatttaatta tattgtaaag tatatcagaa aagtttcata tgtatacccc ttaatgaaac
     2761 tttgtgttaa actttagcta cagggtggtg caattaaatg aaatacggtt atattagacc
     2821 cgttacaata aacgacgatt taaatgaaca aaaaaagaaa atagaaactc atacaaatga
     2881 aattgttgaa gaaattcatg ctaataataa gaagaggaat atattagatg ttcttttaaa
     2941 tgaaaaatta gttcctggag atatgttata cgttacggat ttatgtattc ttgcagattc
     3001 tacgaaacat ttagtagata tattagatta tctttctcag gaggatatat ctttatatgt
     3061 tattaattta aatcgttaca tttataaaga catcaaaggt gaatttatag agatattaca
     3121 tgatatcaca gactttcaaa gtgatattgt taaatttaga actcgtgtag gattagagaa
     3181 ttattcaaaa gatggaaaaa ctttaggaag accaaagcga gatgataaaa atcttagaga
     3241 tgctattgaa atgtatatga gcaaaaaata cactttagat gagataaaag aacagacaaa
     3301 cataagtagg gcaactttgt atcgtcatct agataaataa gaggtgatga acgttgttac
     3361 aagatatagt ctataaagta ttgttatcga ttcgagaaga aaatagcgta gattttaaaa
     3421 cgttggatgt gagtgaaaaa ccttttctat tagcacttga gagcgtagca ggggaagatt
     3481 tagcacaaaa aatttctaaa tttcaaataa ctatacataa aaggcttttt gttttataaa
     3541 attaatgttc tgttctttcc cttttgattc tataaattgt ttgacgtgta atacccacgt
     3601 ctttggctat cttactaata gattctcctt tatttagtag ctcaataaca cgatggtaaa
     3661 caattctctt gtgaggattt ttagcattag gtgaatatag taaagggcgt cctttataca
     3721 cacctttttc tttcgcaatt ttaatccctt gcgcttgtct acgtttactt tcatttcgtt
     3781 cttgttctga aaccattgct aatatttgaa tgattaagtc tttcataaat ttatctaata
     3841 atggattgcc aatgacttcg ttcatcatag gtaagctagt aatcatcaat tgaacttctt
     3901 tgtcttttaa ataattaacg gtatgaatca cttcatcgta attacgacct aaacgatcaa
     3961 tagattctac tataaaccga tcccccattc ttacaaagtt aagtgcttct tgaagtattg
     4021 gtctattttc aatagatttc ccagattgtt tttctataaa tattttttca gcmccaaacg
     4081 tctttaaatt ttcgagttgt ctttctaaat tttgttcgat tgatgatact ctcgcatagc
     4141 caacaatcat tgatttccac ctcacaatta atatacaccc taatcatacg ttttagttgc
     4201 tgttatttta cttgctatat gagaatgttt taactttata aataagaaag agaagtacaa
     4261 ctaatattag ttgtacttct cttt
//
