LOCUS       CP027491                2817 bp    DNA     linear   BCT 19-MAR-2018
DEFINITION  Staphylococcus aureus strain ST2594 isolate 004 plasmid unnamed6.
ACCESSION   CP027491
VERSION     CP027491.1
DBLINK      BioProject: PRJNA436877
            BioSample: SAMN08634544
KEYWORDS    .
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus.
REFERENCE   1  (bases 1 to 2817)
  AUTHORS   Bastos,L.R., Martins,M.C.F., Albano,R.M., Marques,E.A. and Leao,R.S.
  TITLE     Whole genome sequencing of ST2594 MRSA strain causing skin
            colonization and low-grade infection in surgical site. Implications
            for MRSA pathogenesis
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2817)
  AUTHORS   Bastos,L.R., Martins,M.C.F., Albano,R.M., Marques,E.A. and Leao,R.S.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-MAR-2018) Departamento de Microbiologia, Imunologia e
            Parasitologia, Universidade do Estado do Rio de Janeiro, Av. 28 de
            Setembro, 87, Vila Isabel, Rio de Janeiro, RJ 20551-030, Brazil
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: SPAdes v. 3.5; MAUVE v. 2.4.0
            Assembly Name                     :: Saureus141ST2594
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Reference-guided Assembly         :: BA000018.3
            Genome Coverage                   :: 40.0x
            Sequencing Technology             :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/06/2018 13:58:18
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            Annotation Method :: Best-placed reference protein set; GeneMarkS+
            Annotation Software revision      :: 4.4
            Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
            Genes (total)                     :: 2,922
            CDS (total)                       :: 2,883
            Genes (coding)                    :: 2,764
            CDS (coding)                      :: 2,764
            Genes (RNA)                       :: 39
            rRNAs                             :: 3 (5S)
            complete rRNAs                    :: 3 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 119
            Pseudo Genes (ambiguous residues) :: 0 of 119
            Pseudo Genes (frameshifted)       :: 65 of 119
            Pseudo Genes (incomplete)         :: 37 of 119
            Pseudo Genes (internal stop)      :: 29 of 119
            Pseudo Genes (multiple problems)  :: 12 of 119
            ##Genome-Annotation-Data-END##
            Bacteria and source DNA available from Lab2_UERJ_19239.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..2817
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /strain="ST2594"
                     /isolate="004"
                     /isolation_source="Femural surgical wound"
                     /host="Homo sapiens"
                     /db_xref="taxon:1280"
                     /plasmid="unnamed6"
                     /geo_loc_name="Brazil: Rio de Janeiro"
                     /lat_lon="22.8951 S 43.2431 W"
                     /collection_date="2015-03-11"
                     /collected_by="Leonardo Bastos"
     gene            complement(<1..545)
                     /locus_tag="C6V85_14330"
     CDS             complement(<1..545)
                     /locus_tag="C6V85_14330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001106057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS6 family transposase"
                     /protein_id="AVO70324.1"
                     /translation="MNYFRYKQFNKDVITVAVGYYLRYALSYRDISEILRERGVNVHHS
                     TIYRWVQEYAPILYQIWKKKHKKAYYKWRIDETYIKIKGKWSYLYRAIDTEGHTLDIWL
                     RKQRDNHSAYAFIKRLIKQFGKPQKVVTDQAPSTKAAMAKIIKAFKLKPDCHCTSKYLN
                     NLIEQDHRHIKVRKTRYQ"
                     /name="IS6 family transposase"
     gene            complement(575..778)
                     /locus_tag="C6V85_14335"
     CDS             complement(575..778)
                     /locus_tag="C6V85_14335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001627151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP kinase"
                     /protein_id="AVO70325.1"
                     /translation="MGFIEQIKAFILGVVEGLTEFAPVSSTGHMIIVDDMWLNTADDLG
                     SASATTFKVVIQLGGSVAKLNL"
                     /name="UDP kinase"
     gene            complement(792..1529)
                     /locus_tag="C6V85_14340"
     CDS             complement(792..1529)
                     /locus_tag="C6V85_14340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000369394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacitracin ABC transporter permease"
                     /protein_id="AVO70326.1"
                     /translation="MDNLLRTEFIKLKRSYMFLISILGTCVAPFMVVVASFISMRTKVP
                     TPNIVFKQLFEEVSLYHMLIIGPPLYGVIIAYLFGREYIEDTLKNLLIIPISRESFLVS
                     KIILLFLWIQTLSVIAWLLTLMLGMLLHFQGLSQSLIIDSFFTFVIGGVLLWILSPPII
                     ILSIYFKNYVPXIVLTIIITLINLMTANSEHRGLFPWAAVGDISRGTLPNTYPFLLSLI
                     IIIVTSIFSVIILFSYFKKTDIS"
                     /name="bacitracin ABC transporter permease"
     gene            complement(1522..2442)
                     /locus_tag="C6V85_14345"
     CDS             complement(1522..2442)
                     /locus_tag="C6V85_14345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001059585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="AVO70328.1"
                     /translation="MNNIIEINNLTKQYGSQIAVNNLSITVESGQIYGFLGRNGAGKTT
                     TIRMLLGLIKPTKGNIKIFEKEFESNKTEILKNIGAMVETPGFYSNLTAKENLTINAKI
                     LGIQKENAIEEVLEIVGLASEKVKLFKNYSLGMKQRLGIARALLHNPELLILDEPTNGL
                     DPIGIKEIRKLIKDLAQSRNITILISSHILSEIEQLVDKVGIIHNGVLLEEIMYEDLKK
                     KNRQFISISVSDEEKVACLLETNFGIYDYKIKENGEFKIYSHIDRQQEINRLLVLNNID
                     VFQMRVIEDNLETYFEDLVGGGTIG"
                     /name="ABC transporter ATP-binding protein"
     gene            complement(2567..2668)
                     /locus_tag="C6V85_14350"
                     /pseudo=""
     CDS             complement(2567..2668)
                     /locus_tag="C6V85_14350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000270041.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing start; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase"
                     /name="sensor histidine kinase"
     gene            complement(2727..>2817)
                     /locus_tag="C6V85_14355"
     CDS             complement(2727..>2817)
                     /locus_tag="C6V85_14355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001105942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="IS6 family transposase"
                     /protein_id="AVO70327.1"
                     /translation="IYALYKKNRRSLQIYGFSPCHEISIMLAS"
                     /name="IS6 family transposase"
ORIGIN
        1 ctttgatatc ttgtctttct tactttaata tgacggtgat cttgctcaat gaggttattc
       61 agatatttcg atgtacaatg acagtcaggt ttaagtttaa aagctttaat tattttagcc
      121 attgctgcct tcgttgaagg tgcctgatct gtaactacct tttgaggctt accaaattgt
      181 ttaatgagac gtttgataaa cgcatatgct gaatgattat ctcgttgctt acgcaaccaa
      241 atatctaatg tatgtccctc tgtatcaatg gcacgatata aatagctcca ttttcctttt
      301 attttgatat acgtctcatc aatacgccat ttgtaataag cttttttatg ctttttcttc
      361 caaatttgat ataaaattgg ggcatattct tgaacccaac ggtagatcgt tgaatgatga
      421 acgtttacac cacgttctct taatatttca gatatatcac gatagctcaa tgcatatctt
      481 agatagtagc caacggctac agtgataaca tccttgttaa attgtttata tctgaaatag
      541 ttcatacaga agactccttt ttgttaaaat tatattataa attcaacttt gcaacagaac
      601 ctcctaactg tattaccacc ttaaaagtag ttgcagacgc acttcctaaa tcgtcagcag
      661 tgtttaacca catatcatca acaataatca tatgacctgt tgatgatact ggagcaaatt
      721 ctgtcaaccc ttcaactaca cctaaaataa atgctttaat ctgctctata aaacccattt
      781 ttctcctcct tttaacttat atcagttttt ttaaagtatg agaataatat aattacactg
      841 aatatagatg taacaattat gataattaaa gataatagaa atggataagt attaggtaat
      901 gttcctctag atatgtctcc aactgcagcc caaggaaata atcctctatg ttcagaatta
      961 gcagtcatta aatttatcaa agtaattatt atggttaaaa caattgkggg aacataattt
     1021 ttaaaatata tcgacaaaat aattattggt ggagataata tccataataa cactccgcca
     1081 ataacaaatg taaagaatga atcaattatt aaactctggc ttaacccttg aaaatgcaat
     1141 agcataccta gcattaaagt tagcaaccat gcaataacag atagtgtttg aatccacaag
     1201 aataataata ttattttact tactaaaaaa ctttctctag atataggtat aattaataag
     1261 ttttttaaag tatcttctat atattctctt ccaaacaaat aggctattat aaccccatat
     1321 agaggaggtc caataattag catatgatat aaactgactt cttcaaataa ctgtttaaat
     1381 acaatattag gagtcggtac tttcgtccgc atactaataa aagaagctac aaccaccata
     1441 aaaggtgcta cgcatgtacc taaaatactt attagaaaca tatatgatct ttttaactta
     1501 ataaattctg tacggagtag attatccaat tgtgccacct cctactaagt cttcgaaata
     1561 agtttctaga ttatcttcta tcactctcat ctggaaaaca tcaatattgt ttaatactaa
     1621 taatctatta atttcttgtt gtctatcaat atgtgaataa attttaaatt cgccattttc
     1681 tttaatttta tagtcataaa ttccgaagtt agtttccaac aaacatgcaa ctttttcttc
     1741 atctgatact gatatactta taaattgtct gttctttttt tttaaatctt catacataat
     1801 ttcttctaac aaaactccgt tatgaataat acccaccttg tctactaact gctctatttc
     1861 tgacaatata tgacttgaaa ttaaaatggt tatatttcta gattgagcca gatccttaat
     1921 caactttcta atttctttta tgccaatagg atctaatcca ttcgtcggct catcaagtat
     1981 caataattcg ggattgtgca ataaagctct cgcaatccct aaacgttgct tcatacctaa
     2041 agaataattt ttaaacaatt ttactttttc agaagctagt cctactattt ctaacacttc
     2101 ttcaattgca ttttcttttt gtatacctaa tattttagca tttatagtta agttctcttt
     2161 agctgtcaaa ttactataaa aacctggcgt ttcaaccata gcaccaatat tttttaaaat
     2221 ttcagtttta ttactttcga actctttttc aaatatttta atattacctt tcgtaggttt
     2281 aattaagcct aaaagcattc ttatagtagt tgttttgcct gcaccatttc ttcctaaaaa
     2341 accataaatt tgtccacttt caacagttat actcaaatta ttaactgcta tctgacttcc
     2401 atattgcttt gttaagttat ttatttcaat tatattattc aaatttttca cctctggcac
     2461 ctttcttagt ttgttgttac ctttatctta cgcgcgatta gaaaaggctg cctttatcta
     2521 ttcttacaaa aacagccgct aatcttacaa aaatgaaaga ttggagttat ttaaattgaa
     2581 tggtgaatat tgaaccatcg tttaatgtag atgtagcact tactttatgg cctaagcgct
     2641 ttgagattgt gctgacaata tataaaccgg ttctgttgca aagtaaaaaa tatagctaat
     2701 cactaatata tcatgtcagt gttcgtttaa cttgctagca tgatgctaat ttcgtggcat
     2761 ggggaaaatc cgtagatctg aagagaccta cggttctttt tatatagagc gtaaata
//
