LOCUS       CP027487                1469 bp    DNA     linear   BCT 19-MAR-2018
DEFINITION  Staphylococcus aureus strain ST2594 isolate 004 plasmid unnamed2.
ACCESSION   CP027487
VERSION     CP027487.1
DBLINK      BioProject: PRJNA436877
            BioSample: SAMN08634544
KEYWORDS    .
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus.
REFERENCE   1  (bases 1 to 1469)
  AUTHORS   Bastos,L.R., Martins,M.C.F., Albano,R.M., Marques,E.A. and Leao,R.S.
  TITLE     Whole genome sequencing of ST2594 MRSA strain causing skin
            colonization and low-grade infection in surgical site. Implications
            for MRSA pathogenesis
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1469)
  AUTHORS   Bastos,L.R., Martins,M.C.F., Albano,R.M., Marques,E.A. and Leao,R.S.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-MAR-2018) Departamento de Microbiologia, Imunologia e
            Parasitologia, Universidade do Estado do Rio de Janeiro, Av. 28 de
            Setembro, 87, Vila Isabel, Rio de Janeiro, RJ 20551-030, Brazil
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: SPAdes v. 3.5; MAUVE v. 2.4.0
            Assembly Name                     :: Saureus141ST2594
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Reference-guided Assembly         :: BA000018.3
            Genome Coverage                   :: 40.0x
            Sequencing Technology             :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/06/2018 13:58:18
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            Annotation Method :: Best-placed reference protein set; GeneMarkS+
            Annotation Software revision      :: 4.4
            Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
            Genes (total)                     :: 2,922
            CDS (total)                       :: 2,883
            Genes (coding)                    :: 2,764
            CDS (coding)                      :: 2,764
            Genes (RNA)                       :: 39
            rRNAs                             :: 3 (5S)
            complete rRNAs                    :: 3 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 119
            Pseudo Genes (ambiguous residues) :: 0 of 119
            Pseudo Genes (frameshifted)       :: 65 of 119
            Pseudo Genes (incomplete)         :: 37 of 119
            Pseudo Genes (internal stop)      :: 29 of 119
            Pseudo Genes (multiple problems)  :: 12 of 119
            ##Genome-Annotation-Data-END##
            Bacteria and source DNA available from Lab2_UERJ_19239.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..1469
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /strain="ST2594"
                     /isolate="004"
                     /isolation_source="Femural surgical wound"
                     /host="Homo sapiens"
                     /db_xref="taxon:1280"
                     /plasmid="unnamed2"
                     /geo_loc_name="Brazil: Rio de Janeiro"
                     /lat_lon="22.8951 S 43.2431 W"
                     /collection_date="2015-03-11"
                     /collected_by="Leonardo Bastos"
     gene            complement(86..901)
                     /locus_tag="C6V85_14225"
     CDS             complement(86..901)
                     /locus_tag="C6V85_14225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019467708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="AVO70306.1"
                     /translation="MTKNQNFIETKEYKRFAEFCDACIKYQYIGICYGQPGVGKTLSSR
                     YYTNWDTIEKQVNHRGWEDLASKTTDDILSVDKIFYTAPAEKQTKLRNDLYSITASIDL
                     GQKLHVVNKYGHEHSKHYSDMFKYIDLIIVDEIDRLKVQHLEQLRAIYDEHNLAMIFIG
                     MPGIEKKLSRYPQLYSRIGFAHEFDNLSKDETHHILEYKWQDLGFDLKLEDFTDYEAIT
                     TIIKITKGNFRLIHRLFAQIDRIMDINGLDKISTEVVETARDSLVIGIR"
                     /name="ATP-binding protein"
     gene            complement(894..>1469)
                     /locus_tag="C6V85_14230"
     CDS             complement(894..>1469)
                     /locus_tag="C6V85_14230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_863213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="AVO70307.1"
                     /translation="LPGYINNNDTPSNLIDFHNFEEKLRYFLIEDYNQKEHSAIHTTPI
                     SRWNSNHFFPNMPSSLEQLDLLLLEIPKSRKVHSDGIHFQGFRYSNTNLAAYVGEYVLI
                     RYNPNDMAEIRVFYRDEFLCTAICPEIADYSIDIKDIQHARSQRRKHLKQNIASPSTTE
                     LIKEEKNCGYSPQETTKNVKKLKRYRND"
                     /name="transposase"
ORIGIN
        1 tgtcacttta ttcgatatat gagaatgact ttacctaata aatgagaaaa gcaacgcact
       61 atattaaaat gcgttgcttt ttctattatc gaatacctat aactaaacta tctctagctg
      121 tttctacaac ttctgtactt attttatcta aaccatttat atccataatt ctgtctatct
      181 gcgcaaataa acgatgaatc agcctaaaat tcccttttgt gattttaata atcgtcgtta
      241 ttgcttcata atcagtaaag tcttcgagtt ttaaatcaaa tcctaaatct tgccacttat
      301 attctaatat atgatgcgtc tcatctttac ttagattatc aaattcatgc gcaaaaccta
      361 tgcgcgaata tagttgagga taacgagata gttttttctc tatgcccggc ataccaataa
      421 atatcattgc taaattatgt tcatcataaa tagctcttaa ttgctctaaa tgttgcactt
      481 taaggcgatc aatctcatct actataatta aatcaatata tttaaacata tcactataat
      541 gtttactatg ttcatgtcca tacttattta caacatgtaa tttttgaccc aaatcaatgc
      601 ttgcagtaat actatataaa tcattcctta atttagtttg tttttctgct ggtgcagtat
      661 aaaatatttt atccaccgat agtatgtcat cggtcgtttt actagctaga tcttcccaac
      721 ctctatggtt aacttgtttt tcgattgtat cccaatttgt ataatatctt gaagataaag
      781 ttttcccaac tccaggttga ccataacaga taccaatata ttgatattta atgcaagcgt
      841 cacaaaattc agcaaaccgt ttatactctt tcgtttcaat aaaattctga tttttagtca
      901 ttacgatacc tctttaattt tttgacgttt ttagtcgttt cttgaggtga ataaccacaa
      961 tttttttctt ccttaattaa ttctgtggta cttggactag caatattttg ttttaagtgt
     1021 tttcttctct gactacgagc gtgctgtatg tcttttatat ctatggagta atcagctatt
     1081 tctggacata tagcagtaca aagaaattca tctctataaa acacacgtat ttcagccata
     1141 tcatttgggt tataacgaat cagtacatat tcacctacat aagctgctag attagtatta
     1201 ctgtatcgaa aaccttgaaa atgaatgcca tctgaatgaa cttttctaga tttaggtatt
     1261 tccaacaata ataaatcaag ttgttctaag ctacttggca tattagggaa aaagtgatta
     1321 ctattccaac gactgatagg cgtggtatga atagcactat gttctttttg attataatct
     1381 tcaattaaaa agtaacgtag tttttcttca aaattgtgaa aatctattag attactagga
     1441 gtatcattat tgtttatata tccaggcag
//
