LOCUS       CP024505                3012 bp    DNA     circular BCT 06-NOV-2017
DEFINITION  Klebsiella pneumoniae strain KSB2_1B plasmid unnamed9, complete
            sequence.
ACCESSION   CP024505
VERSION     CP024505.1
DBLINK      BioProject: PRJNA351909
            BioSample: SAMEA3357405
KEYWORDS    .
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 3012)
  AUTHORS   Gorrie,C.L., Mirceta,M., Wick,R., Judd,L.M., Wyres,K.L.,
            Thomson,N.R., Strugnell,R.A., Pratt,N.F., Garlic,J.S., Watson,K.M.,
            Hunter,P.C., McGloughlin,S.A., Spelman,D.W., Jenney,A.W.J. and
            Holt,K.E.
  TITLE     Antimicrobial resistant Klebsiella pneumoniae carriage and infection
            in specialized geriatric care wards linked to acquisition in the
            referring hospital
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3012)
  AUTHORS   Gorrie,C.L., Mirceta,M., Wick,R., Judd,L.M., Wyres,K.L.,
            Thomson,N.R., Strugnell,R.A., Pratt,N.F., Garlic,J.S., Watson,K.M.,
            Hunter,P.C., McGloughlin,S.A., Spelman,D.W., Jenney,A.W.J. and
            Holt,K.E.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2017) Biochemistry and Molecular Biology,
            University of Melbourne, Flemington Road, Parkville, Victoria 3052,
            Australia
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 19-JUN-2017
            Assembly Method                   :: Unicycler v. 0.4.0
            Assembly Name                     :: KSB2_1B
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 109x
            Sequencing Technology             :: Illumina HiSeq and ONT
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 10/30/2017 11:04:59
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            Annotation Method :: Best-placed reference protein set; GeneMarkS+
            Annotation Software revision      :: 4.2
            Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
            Genes (total)                     :: 6,094
            CDS (total)                       :: 5,976
            Genes (coding)                    :: 5,724
            CDS (coding)                      :: 5,724
            Genes (RNA)                       :: 118
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 9
            Pseudo Genes (total)              :: 252
            Pseudo Genes (ambiguous residues) :: 0 of 252
            Pseudo Genes (frameshifted)       :: 99 of 252
            Pseudo Genes (incomplete)         :: 154 of 252
            Pseudo Genes (internal stop)      :: 63 of 252
            Pseudo Genes (multiple problems)  :: 55 of 252
            ##Genome-Annotation-Data-END##
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..3012
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="KSB2_1B"
                     /db_xref="taxon:573"
                     /plasmid="unnamed9"
     gene            complement(join(2273..3012,1..559))
                     /locus_tag="CTI57_25850"
                     /pseudo=""
     CDS             complement(join(2273..3012,1..559))
                     /locus_tag="CTI57_25850"
                     /inference="COORDINATES: protein motif:HMM:PF01076.17"
                     /note="incomplete; partial on complete genome; missing
                     start; Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /name="hypothetical protein"
     gene            1481..2077
                     /locus_tag="CTI57_25855"
     CDS             1481..2077
                     /locus_tag="CTI57_25855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013641249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="ATR12650.1"
                     /translation="MTRSTTSPDLGTPAKHKPGQWVQTERKAHEAWAHLIARKPRAAEL
                     LHHLVAQMGHQNAVVVSQKTLAQITGRSVDTVKRALRDLVAERWVSVVKLNGPGTVNAY
                     VVNDRVAWGQPRDQLRLSVFSATVIADFGDQEEALLGHADLRRIPTLYPGELQLPTGPG
                     EDPPNQPPIPGLEPDLPALSETEQLEQRGQQRLLE"
                     /name="helix-turn-helix domain-containing protein"
ORIGIN
        1 cgatctgggc gtagaagtcc ttgatggtct ggtggtgcgc cttgctgccc tcgatgccgc
       61 gttccagacc gtggcgagcg ccgacggtct tggcgaagtc ggtttgcatc ttggacaggg
      121 cggcggggcc acccgtccat tgcttggcgt tgagcttccc cttgtcgtcg agcggcacca
      181 cgtaggccac cagatggggc gtgctctcgt cccggtggat cgaccagccg accacgtttt
      241 ccttgccgtg gcgcttctca agccagccca ccgcctcgcg gaaataggcg tcctgctgct
      301 cgcggttctt gccctcgaac cactccgggg agccgccgac gaagtattcc agcccgatga
      361 ccgcatcctt gcgccgcttc tccgggagct tgtcgcgcag ggcctgcatg acctcgcccg
      421 gggtggcgtg gctgtgctcg ttctggtcgg cccggctggg gtcggcgttg ctggtctcgc
      481 gcgtccggta ggtgtgcgcc agcgacccac cgacgttgcc aagcgacttg agtttggcgg
      541 tgcgcaggat ggcgaagtgt gcgggcatgg ggatgtctcc gaggtggcag cggcagcggc
      601 tttgcagaca aagtgtactc actatacttt gctgacgcaa agtagtgccc gcctgcggcg
      661 gctgcggcgg gcttcgccct tgcccagagg gggcgctgcc ccctctggac tcccggcccg
      721 tggatatgtg gacgatggcc tgcggccacc ggctggctcg cttcgctcgg cccgtggaca
      781 accctgatgg acggcccgtg gacaggctgc gcctgcccac cgcccgccca cagggattgc
      841 ccaccggctg cccagccttc gtccacatac ccaccggccc ctgcgcggcc tgcggccttg
      901 cccatcgatc aattttgaaa atttctctcc aaaccccctc cggcctgcgc gctgcgcttg
      961 ccgggtgcgg cggacgggtc aaggggttgg tgcggcccgc agcccgcagg gcgaggactc
     1021 ggccccttga cgcggccaga gcgcccacag cctcagccgt ggagcagagg aagggcgtag
     1081 cccgccccct gctcccgcgg cgtatggggc aagaccccat gcgggagtcc agcccgaagg
     1141 gggctggtca agcccgcagg gcgcgaaggg gggggacaga gcgcccccct ctggggggca
     1201 cttagaccgg gagggggagc cggcgaagcc gggggaaccc cggaggggtg cccttctctg
     1261 ggaaccagag aactagatat aggccgattt tcaaagtcct ttgaaatcaa tgacttacgc
     1321 cgggggggta gtgcagcagc tttgcacggg gggtagtgca gcagctttgc actaggttgc
     1381 ttgaaaacca agccagcttg cgcgataatc ttgcttgatt ttcacgcaag attgccggat
     1441 ttgatcgacg tcttgcccta cccctagtgc aggagtccgc atgacacgct cgaccacatc
     1501 cccagacttg ggcaccccgg ccaaacacaa gcccggccag tgggtgcaga ccgaacgcaa
     1561 ggcccatgag gcgtgggcgc acctgatagc ccgcaagccc cgcgccgccg agcttctgca
     1621 ccatctggtg gcgcagatgg gccaccagaa cgccgtggtg gtcagccaaa agacgctggc
     1681 ccagatcacg ggccggagcg tggacacggt gaaacgcgcc ctccgcgatc tggtggccga
     1741 gcgctgggtt tctgtcgtga agctcaacgg ccccggcacg gtgaacgcct acgtggtcaa
     1801 tgaccgcgtg gcgtggggcc agccccgcga ccagttgcgc ctgtcggtgt tctcggccac
     1861 ggtcattgcc gacttcggcg accaagagga ggcgctactc ggccacgccg acttgcgccg
     1921 catcccgacc ctgtaccccg gcgagctaca actgccgacc ggccccggcg aagatccacc
     1981 gaaccagccc cccattcccg gactggagcc agacctgccc gccctgtccg aaaccgagca
     2041 gcttgagcag cgcggccagc agaggctgct ggagtagccc ccggcagggc gcgagtgttt
     2101 cctgccaagg aaacacgtat tcgcgcatcc atcccccgca gggggtcgga tggcctgccg
     2161 ggcacgcacg taatccaccc ctcgggggga ttactctcag tgcgcccttc gcctgccttg
     2221 ccgacgcacg ggacattcgc gcagcggatg tcgtaagtgc gcccttcggg actcagccca
     2281 gcgacggccc gtcgtgctgc ttgcccacct tcggggccgc tatctccttc ccggccagcg
     2341 tcgaaatgaa ggcccgcgcc tgctcctgcc gtgctggctc gaccatcccc ggcgagtact
     2401 tcacgatggc cgcgagcacg tccttgggct gctgccggtg ctgtgtgatc gactccatga
     2461 cggctgcttt ctcgaccgtg ggccaatgca ccttggaggc gtccccgccc gccttctgga
     2521 ttgcttccaa ggcgtgctgc gcgaacgtgc aggacgctcc cgccgtcttg cgctccacgc
     2581 gcaccaggtc atccacccgg cgctgtcgtt cctggtcgag cttttcccgc tcggcggcct
     2641 tctcccgctc cgctttgatg gccttgaccc gctcctgagc gtgcatgacg agctggacga
     2701 actcctgctt ggccagcgtc gccagctcca agaccggcgc aaggtgcttt tgcagggcct
     2761 gcaagcgctc ctgagcctct tttttctccc ggctgagggt ttgggccgtc tgggtcattt
     2821 cgtcggctct gcggcgctct gaggcggcca gcttggcggc ttcgacggct ggggtgtacg
     2881 ccttttgcac tgcggccgtc aggcgctcgg cgaccatctc cggcgtctcg tactcgttgg
     2941 tcagaaaccc cttcttgagc accttgggct gggccgtctc cgggctgatg gtgacgtgct
     3001 ggcccggctt ct
//
